HEADER IMMUNE SYSTEM 15-JUL-11 3SY0 TITLE S25-2- A(2-8)-A(2-4)KDO TRISACCHARIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: S25-2 FAB (IGG1K) LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: S25-2 FAB (IGG1K) HEAVY CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIGEN-BINDING FRAGMENT, FAB, ANTI-CARBOHYDRATE, ANTI-LPS, ANTIBODY, KEYWDS 2 IMMUNOGLOBULIN, KDO, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.P.NGUYEN,N.O.SETO,C.R.MACKENZIE,L.BRADE,P.KOSMA,H.BRADE,S.V.EVANS REVDAT 3 13-SEP-23 3SY0 1 HETSYN REVDAT 2 29-JUL-20 3SY0 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 03-AUG-11 3SY0 0 SPRSDE 03-AUG-11 3SY0 1Q9Q JRNL AUTH H.P.NGUYEN,N.O.SETO,C.R.MACKENZIE,L.BRADE,P.KOSMA,H.BRADE, JRNL AUTH 2 S.V.EVANS JRNL TITL GERMLINE ANTIBODY RECOGNITION OF DISTINCT CARBOHYDRATE JRNL TITL 2 EPITOPES JRNL REF NAT.STRUCT.BIOL. V. 10 1019 2003 JRNL REFN ISSN 1072-8368 JRNL PMID 14625588 JRNL DOI 10.1038/NSB1014 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 73626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.080 REMARK 3 FREE R VALUE TEST SET COUNT : 7420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7744 - 4.6068 0.87 2276 238 0.1951 0.2055 REMARK 3 2 4.6068 - 3.6642 0.94 2303 290 0.1568 0.1899 REMARK 3 3 3.6642 - 3.2032 0.95 2343 246 0.1787 0.1927 REMARK 3 4 3.2032 - 2.9113 0.96 2344 258 0.1870 0.2059 REMARK 3 5 2.9113 - 2.7032 0.96 2284 298 0.1956 0.2214 REMARK 3 6 2.7032 - 2.5442 0.97 2372 236 0.1899 0.2178 REMARK 3 7 2.5442 - 2.4170 0.96 2326 259 0.1979 0.2219 REMARK 3 8 2.4170 - 2.3120 0.97 2335 247 0.1847 0.2167 REMARK 3 9 2.3120 - 2.2231 0.97 2350 256 0.1914 0.2305 REMARK 3 10 2.2231 - 2.1465 0.97 2307 260 0.1840 0.2053 REMARK 3 11 2.1465 - 2.0794 0.98 2332 250 0.1850 0.2082 REMARK 3 12 2.0794 - 2.0200 0.96 2339 244 0.1833 0.1843 REMARK 3 13 2.0200 - 1.9669 0.97 2302 259 0.1830 0.2250 REMARK 3 14 1.9669 - 1.9190 0.97 2323 245 0.1829 0.2153 REMARK 3 15 1.9190 - 1.8754 0.95 2265 250 0.1911 0.2092 REMARK 3 16 1.8754 - 1.8355 0.95 2242 288 0.1856 0.2153 REMARK 3 17 1.8355 - 1.7988 0.95 2260 253 0.1842 0.2175 REMARK 3 18 1.7988 - 1.7649 0.95 2205 269 0.1878 0.2413 REMARK 3 19 1.7649 - 1.7334 0.94 2272 254 0.1922 0.2425 REMARK 3 20 1.7334 - 1.7040 0.94 2175 275 0.1855 0.2177 REMARK 3 21 1.7040 - 1.6765 0.93 2205 256 0.1956 0.2265 REMARK 3 22 1.6765 - 1.6508 0.92 2184 226 0.2008 0.2290 REMARK 3 23 1.6508 - 1.6265 0.91 2154 244 0.1935 0.2091 REMARK 3 24 1.6265 - 1.6036 0.91 2160 247 0.1925 0.2481 REMARK 3 25 1.6036 - 1.5819 0.90 2135 248 0.2070 0.2215 REMARK 3 26 1.5819 - 1.5614 0.90 2120 235 0.2142 0.2553 REMARK 3 27 1.5614 - 1.5419 0.87 2076 221 0.2237 0.2460 REMARK 3 28 1.5419 - 1.5233 0.81 1866 221 0.2389 0.2706 REMARK 3 29 1.5233 - 1.5056 0.74 1817 178 0.2541 0.3083 REMARK 3 30 1.5056 - 1.4887 0.66 1534 169 0.2656 0.2805 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 39.46 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.92830 REMARK 3 B22 (A**2) : -1.87800 REMARK 3 B33 (A**2) : -2.05030 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3543 REMARK 3 ANGLE : 1.200 4808 REMARK 3 CHIRALITY : 0.074 543 REMARK 3 PLANARITY : 0.005 607 REMARK 3 DIHEDRAL : 12.284 1270 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066792. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.15 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73625 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 19.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: STARTING MODEL: PDB ENTRY 1Q9O, S45-18 FAB REMARK 200 UNLIGANDED REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: KDO TRISACCHARIDE, MAGNESIUM CHLORIDE, REMARK 280 ZINC CHLORIDE, ETHYLENE GLYCOL, GLYCEROL, PEG 4000, TRIS, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.80000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.30000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.30000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.80000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 676 O HOH B 685 1.81 REMARK 500 O HOH B 334 O HOH B 661 1.84 REMARK 500 O HOH A 374 O HOH A 519 1.87 REMARK 500 NZ LYS A 106 O HOH A 473 1.96 REMARK 500 O HOH B 672 O HOH B 678 1.96 REMARK 500 O HOH A 521 O HOH A 642 1.97 REMARK 500 O HOH B 261 O HOH B 352 1.98 REMARK 500 SG CYS B 138 O HOH B 437 2.00 REMARK 500 SG CYS B 193 O HOH B 437 2.01 REMARK 500 SG CYS A 133 O HOH A 439 2.01 REMARK 500 O HOH A 487 O HOH A 703 2.01 REMARK 500 O HOH B 412 O HOH B 545 2.01 REMARK 500 O HOH A 477 O HOH A 648 2.04 REMARK 500 O HOH A 557 O HOH A 692 2.04 REMARK 500 O HOH B 233 O HOH B 663 2.04 REMARK 500 OE2 GLU A 186 O HOH A 690 2.05 REMARK 500 O HOH A 256 O HOH A 708 2.07 REMARK 500 O HOH A 237 O HOH A 441 2.10 REMARK 500 N GLN B 129 O HOH B 638 2.11 REMARK 500 SG CYS A 213 O HOH A 441 2.12 REMARK 500 O ASP A 1 O HOH A 388 2.12 REMARK 500 O HOH A 496 O HOH B 213 2.12 REMARK 500 O HOH B 308 O HOH B 654 2.12 REMARK 500 O HOH A 292 O HOH A 452 2.13 REMARK 500 O HOH A 223 O HOH A 419 2.14 REMARK 500 O HOH B 278 O HOH B 530 2.15 REMARK 500 O HOH B 423 O HOH B 445 2.15 REMARK 500 O HOH B 356 O HOH B 505 2.16 REMARK 500 OG1 THR A 179 O HOH A 493 2.17 REMARK 500 O HOH B 402 O HOH B 689 2.17 REMARK 500 O HOH B 349 O HOH B 505 2.18 REMARK 500 O HOH A 553 O HOH A 660 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 628 O HOH B 634 3546 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 33 CA - CB - CG ANGL. DEV. = -17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 -40.69 69.71 REMARK 500 ALA A 84 165.96 179.00 REMARK 500 LEU A 94 -140.39 50.19 REMARK 500 ASP B 95 -146.21 -117.41 REMARK 500 TYR B 99 -67.46 -126.41 REMARK 500 ALA B 127 95.12 -168.02 REMARK 500 THR B 130 0.91 -67.89 REMARK 500 SER B 132 -46.19 65.48 REMARK 500 PRO B 210 -154.34 -75.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 217 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 137 OD1 REMARK 620 2 HOH B 687 O 95.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 218 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 184 OE2 REMARK 620 2 HIS A 188 NE2 100.8 REMARK 620 3 HOH A 337 O 99.1 107.4 REMARK 620 N 1 2 DBREF 3SY0 A 1 213 PDB 3SY0 3SY0 1 213 DBREF 3SY0 B 1 211 PDB 3SY0 3SY0 1 211 SEQRES 1 A 219 ASP ILE VAL MET SER GLN SER PRO SER SER LEU ALA VAL SEQRES 2 A 219 SER ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 A 219 GLN SER LEU LEU ASN SER ARG THR ARG LYS ASN TYR LEU SEQRES 4 A 219 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 A 219 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 A 219 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 A 219 LEU THR ILE THR SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 A 219 TYR TYR CYS LYS GLN SER TYR ASN LEU ARG THR PHE GLY SEQRES 9 A 219 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 A 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 A 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 A 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 A 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 A 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 A 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 A 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 A 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 B 222 GLU VAL LYS LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 222 SER GLY GLY SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 B 222 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 B 222 PRO PRO GLY LYS ALA LEU GLU TRP LEU GLY PHE ILE ARG SEQRES 5 B 222 ASN LYS ALA ASN GLY TYR THR THR GLU TYR SER PRO SER SEQRES 6 B 222 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER GLN SEQRES 7 B 222 SER ILE LEU TYR LEU GLN MET ASN THR LEU ARG ALA GLU SEQRES 8 B 222 ASP SER ALA THR TYR TYR CYS ALA ARG ASP HIS ASP GLY SEQRES 9 B 222 TYR TYR GLU ARG PHE SER TYR TRP GLY GLN GLY THR LEU SEQRES 10 B 222 VAL THR VAL SER ALA ALA LYS THR THR PRO PRO SER VAL SEQRES 11 B 222 TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER SEQRES 12 B 222 MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO SEQRES 13 B 222 GLU PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SEQRES 14 B 222 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP SEQRES 15 B 222 LEU TYR THR LEU SER SER SER VAL THR VAL PRO SER SER SEQRES 16 B 222 THR TRP PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS SEQRES 17 B 222 PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO SEQRES 18 B 222 ARG HET KDA C 1 19 HET KDO C 2 15 HET KDO C 3 15 HET MG A 216 1 HET ZN A 218 1 HET MG B 217 1 HETNAM KDA PROP-2-EN-1-YL 3-DEOXY-ALPHA-D-MANNO-OCT-2- HETNAM 2 KDA ULOPYRANOSIDONIC ACID HETNAM KDO 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOPYRANOSONIC ACID HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION HETSYN KDA (3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID)-2-O-ALLYL; PROP- HETSYN 2 KDA 2-EN-1-YL 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOSIDONIC ACID; HETSYN 3 KDA PROP-2-EN-1-YL 3-DEOXY-D-MANNO-OCT-2-ULOSIDONIC ACID; HETSYN 4 KDA PROP-2-EN-1-YL 3-DEOXY-MANNO-OCT-2-ULOSIDONIC ACID HETSYN KDO 3-DEOXY-D-MANNO-OCT-2-ULOPYRANOSONIC ACID; 2-KETO-3- HETSYN 2 KDO DEOXY-D-MANNOOCTANOIC ACID; 3-DEOXY-ALPHA-D-MANNO-OCT- HETSYN 3 KDO 2-ULOSONIC ACID; 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID; HETSYN 4 KDO 3-DEOXY-MANNO-OCT-2-ULOSONIC ACID FORMUL 3 KDA C11 H18 O8 FORMUL 3 KDO 2(C8 H14 O8) FORMUL 4 MG 2(MG 2+) FORMUL 5 ZN ZN 2+ FORMUL 7 HOH *708(H2 O) HELIX 1 1 GLN A 79 LEU A 83 5 5 HELIX 2 2 SER A 120 SER A 126 1 7 HELIX 3 3 LYS A 182 GLU A 186 1 5 HELIX 4 4 ASN A 211 CYS A 213 5 3 HELIX 5 5 THR B 28 TYR B 32 5 5 HELIX 6 6 ASN B 52A GLY B 52E 5 5 HELIX 7 7 ARG B 83 SER B 87 5 5 HELIX 8 8 SER B 154 SER B 156 5 3 HELIX 9 9 PRO B 198 SER B 201 5 4 SHEET 1 A 4 MET A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 SER A 25 -1 O SER A 22 N SER A 7 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O ILE A 75 N VAL A 19 SHEET 4 A 4 PHE A 62 SER A 67 -1 N THR A 63 O THR A 74 SHEET 1 B 6 SER A 10 SER A 14 0 SHEET 2 B 6 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 B 6 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 103 SHEET 4 B 6 LEU A 33 GLN A 38 -1 N TYR A 36 O TYR A 87 SHEET 5 B 6 LYS A 45 TYR A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 B 6 THR A 53 ARG A 54 -1 O THR A 53 N TYR A 49 SHEET 1 C 4 SER A 10 SER A 14 0 SHEET 2 C 4 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 C 4 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 103 SHEET 4 C 4 THR A 96 PHE A 97 -1 O THR A 96 N GLN A 90 SHEET 1 D 2 LEU A 30 ASN A 30A 0 SHEET 2 D 2 LYS A 30F ASN A 31 -1 O LYS A 30F N ASN A 30A SHEET 1 E 4 THR A 113 PHE A 117 0 SHEET 2 E 4 GLY A 128 PHE A 138 -1 O ASN A 136 N THR A 113 SHEET 3 E 4 TYR A 172 THR A 181 -1 O LEU A 178 N VAL A 131 SHEET 4 E 4 VAL A 158 TRP A 162 -1 N LEU A 159 O THR A 177 SHEET 1 F 4 SER A 152 ARG A 154 0 SHEET 2 F 4 ASN A 144 ILE A 149 -1 N TRP A 147 O ARG A 154 SHEET 3 F 4 SER A 190 THR A 196 -1 O GLU A 194 N LYS A 146 SHEET 4 F 4 ILE A 204 ASN A 209 -1 O ILE A 204 N ALA A 195 SHEET 1 G 4 LYS B 3 SER B 7 0 SHEET 2 G 4 LEU B 18 SER B 25 -1 O ALA B 23 N VAL B 5 SHEET 3 G 4 ILE B 75 MET B 80 -1 O LEU B 78 N LEU B 20 SHEET 4 G 4 PHE B 65 ASP B 70 -1 N THR B 66 O GLN B 79 SHEET 1 H 6 LEU B 11 VAL B 12 0 SHEET 2 H 6 THR B 105 VAL B 109 1 O THR B 108 N VAL B 12 SHEET 3 H 6 ALA B 88 ARG B 94 -1 N ALA B 88 O VAL B 107 SHEET 4 H 6 MET B 34 GLN B 39 -1 N VAL B 37 O TYR B 91 SHEET 5 H 6 GLU B 46 ILE B 51 -1 O LEU B 48 N TRP B 36 SHEET 6 H 6 THR B 55 TYR B 57 -1 O GLU B 56 N PHE B 50 SHEET 1 I 4 SER B 118 LEU B 122 0 SHEET 2 I 4 MET B 133 TYR B 143 -1 O GLY B 137 N LEU B 122 SHEET 3 I 4 LEU B 172 PRO B 182 -1 O TYR B 173 N TYR B 143 SHEET 4 I 4 VAL B 161 THR B 163 -1 N HIS B 162 O SER B 178 SHEET 1 J 4 SER B 118 LEU B 122 0 SHEET 2 J 4 MET B 133 TYR B 143 -1 O GLY B 137 N LEU B 122 SHEET 3 J 4 LEU B 172 PRO B 182 -1 O TYR B 173 N TYR B 143 SHEET 4 J 4 VAL B 167 GLN B 169 -1 N GLN B 169 O LEU B 172 SHEET 1 K 3 THR B 149 TRP B 152 0 SHEET 2 K 3 THR B 192 HIS B 197 -1 O ASN B 194 N THR B 151 SHEET 3 K 3 THR B 202 LYS B 207 -1 O VAL B 204 N VAL B 195 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.08 SSBOND 2 CYS A 133 CYS A 193 1555 1555 2.03 SSBOND 3 CYS B 22 CYS B 92 1555 1555 2.04 SSBOND 4 CYS B 138 CYS B 193 1555 1555 2.05 LINK O4 KDA C 1 C2 KDO C 2 1555 1555 1.45 LINK O8 KDO C 2 C2 KDO C 3 1555 1555 1.38 LINK OD1 ASN A 137 MG MG B 217 1555 1555 1.94 LINK OD2 ASP A 150 MG MG A 216 1555 1555 1.99 LINK OE2 GLU A 184 ZN ZN A 218 1555 1555 1.91 LINK NE2 HIS A 188 ZN ZN A 218 1555 1555 1.94 LINK ZN ZN A 218 O HOH A 337 1555 1555 2.29 LINK MG MG B 217 O HOH B 687 1555 1555 2.52 CISPEP 1 SER A 7 PRO A 8 0 -7.53 CISPEP 2 TYR A 139 PRO A 140 0 3.77 CISPEP 3 PHE B 144 PRO B 145 0 -3.90 CISPEP 4 GLU B 146 PRO B 147 0 -1.25 CISPEP 5 TRP B 186 PRO B 187 0 5.85 CRYST1 45.600 80.900 130.600 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021930 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007657 0.00000