HEADER CELL ADHESION 18-JUL-11 3SYJ TITLE CRYSTAL STRUCTURE OF THE HAEMOPHILUS INFLUENZAE HAP ADHESIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADHESION AND PENETRATION PROTEIN AUTOTRANSPORTER; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HAP PASSENGER DOMAIN (HAPS), UNP RESIDUES 26-1036; COMPND 5 SYNONYM: HAP ADHESIN, ADHESION AND PENETRATION PROTEIN, ADHESION AND COMPND 6 PENETRATION PROTEIN TRANSLOCATOR; COMPND 7 EC: 3.4.21.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 STRAIN: DB117; SOURCE 5 GENE: HAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PJS106 KEYWDS BACTERIAL AGGREGATION AND BIOFILM FORMATION, SELF-ASSOCIATING KEYWDS 2 AUTOTRANSPORTER (SAAT), OLIGOMERIZATION, BETA HELIX FOLD, MEMBRANE, KEYWDS 3 CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR G.MENG REVDAT 5 16-OCT-24 3SYJ 1 REMARK REVDAT 4 01-NOV-23 3SYJ 1 REMARK REVDAT 3 08-NOV-17 3SYJ 1 REMARK REVDAT 2 03-JUL-13 3SYJ 1 JRNL REVDAT 1 24-AUG-11 3SYJ 0 JRNL AUTH G.MENG,N.SPAHICH,R.KENJALE,G.WAKSMAN,J.W.ST GEME III JRNL TITL CRYSTAL STRUCTURE OF THE HAEMOPHILUS INFLUENZAE HAP ADHESIN JRNL TITL 2 REVEALS AN INTERCELLULAR OLIGOMERIZATION MECHANISM FOR JRNL TITL 3 BACTERIAL AGGREGATION JRNL REF EMBO J. V. 30 3864 2011 JRNL REFN ISSN 0261-4189 JRNL PMID 21841773 JRNL DOI 10.1038/EMBOJ.2011.279 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.7 REMARK 3 NUMBER OF REFLECTIONS : 60596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 68.6333 - 6.8338 0.96 3551 173 0.1815 0.2116 REMARK 3 2 6.8338 - 5.4249 0.95 3600 178 0.1621 0.1704 REMARK 3 3 5.4249 - 4.7393 0.97 3558 184 0.1300 0.1737 REMARK 3 4 4.7393 - 4.3061 0.97 3590 189 0.1189 0.1515 REMARK 3 5 4.3061 - 3.9975 0.97 3564 197 0.1240 0.1589 REMARK 3 6 3.9975 - 3.7618 0.97 3553 188 0.1306 0.1769 REMARK 3 7 3.7618 - 3.5734 0.97 3597 221 0.1346 0.1577 REMARK 3 8 3.5734 - 3.4179 0.97 3507 232 0.1356 0.1739 REMARK 3 9 3.4179 - 3.2863 0.96 3633 189 0.1515 0.2173 REMARK 3 10 3.2863 - 3.1729 0.96 3521 151 0.1714 0.2347 REMARK 3 11 3.1729 - 3.0737 0.95 3615 203 0.1773 0.2282 REMARK 3 12 3.0737 - 2.9858 0.94 3402 209 0.1918 0.2413 REMARK 3 13 2.9858 - 2.9072 0.94 3534 187 0.1915 0.2247 REMARK 3 14 2.9072 - 2.8363 0.94 3464 214 0.1996 0.2248 REMARK 3 15 2.8363 - 2.7718 0.93 3410 185 0.2026 0.2217 REMARK 3 16 2.7718 - 2.7128 0.92 3419 187 0.2022 0.2626 REMARK 3 17 2.7128 - 2.6586 0.92 3438 166 0.2064 0.2915 REMARK 3 18 2.6586 - 2.6084 0.90 3290 162 0.2161 0.2924 REMARK 3 19 2.6084 - 2.5618 0.90 3328 176 0.2335 0.2560 REMARK 3 20 2.5618 - 2.5184 0.89 3356 152 0.2284 0.2860 REMARK 3 21 2.5184 - 2.4778 0.88 3249 156 0.2363 0.3151 REMARK 3 22 2.4778 - 2.4396 0.84 3052 175 0.2527 0.2839 REMARK 3 23 2.4396 - 2.4037 0.81 3066 171 0.2665 0.3200 REMARK 3 24 2.4037 - 2.3699 0.78 2930 139 0.2653 0.2969 REMARK 3 25 2.3699 - 2.3379 0.73 2677 124 0.2837 0.3094 REMARK 3 26 2.3379 - 2.3075 0.69 2537 122 0.2787 0.3224 REMARK 3 27 2.3075 - 2.2786 0.66 2446 158 0.2935 0.3280 REMARK 3 28 2.2786 - 2.2512 0.61 2272 159 0.3252 0.3963 REMARK 3 29 2.2512 - 2.2250 0.59 2154 115 0.3319 0.3464 REMARK 3 30 2.2250 - 2.2000 0.54 1983 112 0.3131 0.3135 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 32.41 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.84550 REMARK 3 B22 (A**2) : -5.98740 REMARK 3 B33 (A**2) : 4.14190 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 7337 REMARK 3 ANGLE : 0.918 9928 REMARK 3 CHIRALITY : 0.060 1073 REMARK 3 PLANARITY : 0.003 1320 REMARK 3 DIHEDRAL : 17.687 2640 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000066811. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60596 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 68.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13500 REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.58800 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 3H09 AND 2WXR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CITRATE, 14% (W/V) PEG REMARK 280 4000, 100MM AMMONIUM SULFATE, PH 5.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.70500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.79000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 104.79000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.70500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND HAPS OF THE BIOLOGICAL ASSEMBLY MEDIATED BY THE REMARK 300 C-TERMINAL SAAT DOMAIN IS GENERATED ALONE THE P21 A-AXIS. THE REMARK 300 CRYSTAL PACKING REVEALS A REMARKABLE OLIGOMERIZATION OF (HAPS-HAPS) REMARK 300 N RELATED BY A CRYSTALLOGRAPHIC TWO-FOLD SCREW AXIS (I.E. P21 A- REMARK 300 AXIS), PERPENDICULAR TO THE AXIS OF THE HELIX. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -20.70500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 205.80000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 265 REMARK 465 GLY A 266 REMARK 465 ASN A 267 REMARK 465 PRO A 268 REMARK 465 PHE A 269 REMARK 465 GLU A 270 REMARK 465 GLY A 271 REMARK 465 LYS A 272 REMARK 465 ALA A 851 REMARK 465 SER A 852 REMARK 465 SER A 853 REMARK 465 ASN A 854 REMARK 465 ASN A 855 REMARK 465 THR A 856 REMARK 465 PRO A 857 REMARK 465 ARG A 858 REMARK 465 ARG A 859 REMARK 465 ARG A 860 REMARK 465 SER A 861 REMARK 465 LEU A 862 REMARK 465 GLU A 863 REMARK 465 THR A 864 REMARK 465 GLU A 865 REMARK 465 THR A 866 REMARK 465 THR A 867 REMARK 465 PRO A 868 REMARK 465 THR A 869 REMARK 465 SER A 870 REMARK 465 ALA A 871 REMARK 465 GLU A 872 REMARK 465 HIS A 873 REMARK 465 ILE A 977 REMARK 465 LYS A 978 REMARK 465 GLU A 979 REMARK 465 GLN A 980 REMARK 465 GLU A 981 REMARK 465 LEU A 982 REMARK 465 HIS A 983 REMARK 465 ASN A 984 REMARK 465 ASP A 985 REMARK 465 LEU A 986 REMARK 465 VAL A 987 REMARK 465 ARG A 988 REMARK 465 ALA A 989 REMARK 465 GLU A 990 REMARK 465 GLN A 991 REMARK 465 ALA A 992 REMARK 465 GLU A 993 REMARK 465 ARG A 994 REMARK 465 THR A 995 REMARK 465 LEU A 996 REMARK 465 GLU A 997 REMARK 465 ALA A 998 REMARK 465 LYS A 999 REMARK 465 GLN A 1000 REMARK 465 VAL A 1001 REMARK 465 GLU A 1002 REMARK 465 PRO A 1003 REMARK 465 THR A 1004 REMARK 465 ALA A 1005 REMARK 465 LYS A 1006 REMARK 465 THR A 1007 REMARK 465 GLN A 1008 REMARK 465 THR A 1009 REMARK 465 GLY A 1010 REMARK 465 GLU A 1011 REMARK 465 PRO A 1012 REMARK 465 LYS A 1013 REMARK 465 VAL A 1014 REMARK 465 ARG A 1015 REMARK 465 SER A 1016 REMARK 465 ARG A 1017 REMARK 465 ARG A 1018 REMARK 465 ALA A 1019 REMARK 465 ALA A 1020 REMARK 465 ARG A 1021 REMARK 465 ALA A 1022 REMARK 465 ALA A 1023 REMARK 465 PHE A 1024 REMARK 465 PRO A 1025 REMARK 465 ASP A 1026 REMARK 465 THR A 1027 REMARK 465 LEU A 1028 REMARK 465 PRO A 1029 REMARK 465 ASP A 1030 REMARK 465 GLN A 1031 REMARK 465 SER A 1032 REMARK 465 LEU A 1033 REMARK 465 LEU A 1034 REMARK 465 ASN A 1035 REMARK 465 ALA A 1036 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 323 CB CG1 CG2 CD1 REMARK 470 LYS A 923 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 102 NH2 ARG A 126 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 44 -169.33 -116.67 REMARK 500 PHE A 47 41.22 -93.36 REMARK 500 ARG A 183 129.75 -36.42 REMARK 500 ARG A 212 43.36 -141.30 REMARK 500 TYR A 349 32.13 -93.08 REMARK 500 LYS A 371 -87.59 -120.58 REMARK 500 SER A 400 -71.82 -136.96 REMARK 500 ASN A 401 27.05 -150.21 REMARK 500 GLN A 440 36.73 -148.63 REMARK 500 GLU A 459 50.43 -145.00 REMARK 500 SER A 478 -2.27 84.26 REMARK 500 ARG A 501 -0.38 72.39 REMARK 500 ASN A 549 -164.00 -108.89 REMARK 500 ASN A 552 59.77 -148.99 REMARK 500 ASP A 590 56.72 -97.98 REMARK 500 SER A 667 -161.59 -106.75 REMARK 500 ASN A 681 -129.89 48.24 REMARK 500 ASP A 736 -123.40 50.35 REMARK 500 ASN A 749 72.28 -102.09 REMARK 500 ASN A 756 -125.87 58.07 REMARK 500 ASP A 776 -120.91 54.95 REMARK 500 ASP A 795 -123.02 57.78 REMARK 500 HIS A 808 -169.78 -123.16 REMARK 500 ASP A 813 -168.20 -116.08 REMARK 500 GLN A 834 -79.53 -94.11 REMARK 500 ASP A 938 -159.87 -149.30 REMARK 500 ASP A 953 -11.11 69.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 921 GLY A 922 -59.71 REMARK 500 REMARK 500 REMARK: NULL DBREF 3SYJ A 26 1036 UNP P45387 HAP2_HAEIF 26 1036 SEQRES 1 A 1011 GLY HIS THR TYR PHE GLY ILE ASP TYR GLN TYR TYR ARG SEQRES 2 A 1011 ASP PHE ALA GLU ASN LYS GLY LYS PHE THR VAL GLY ALA SEQRES 3 A 1011 GLN ASN ILE LYS VAL TYR ASN LYS GLN GLY GLN LEU VAL SEQRES 4 A 1011 GLY THR SER MET THR LYS ALA PRO MET ILE ASP PHE SER SEQRES 5 A 1011 VAL VAL SER ARG ASN GLY VAL ALA ALA LEU VAL GLU ASN SEQRES 6 A 1011 GLN TYR ILE VAL SER VAL ALA HIS ASN VAL GLY TYR THR SEQRES 7 A 1011 ASP VAL ASP PHE GLY ALA GLU GLY ASN ASN PRO ASP GLN SEQRES 8 A 1011 HIS ARG PHE THR TYR LYS ILE VAL LYS ARG ASN ASN TYR SEQRES 9 A 1011 LYS LYS ASP ASN LEU HIS PRO TYR GLU ASP ASP TYR HIS SEQRES 10 A 1011 ASN PRO ARG LEU HIS LYS PHE VAL THR GLU ALA ALA PRO SEQRES 11 A 1011 ILE ASP MET THR SER ASN MET ASN GLY SER THR TYR SER SEQRES 12 A 1011 ASP ARG THR LYS TYR PRO GLU ARG VAL ARG ILE GLY SER SEQRES 13 A 1011 GLY ARG GLN PHE TRP ARG ASN ASP GLN ASP LYS GLY ASP SEQRES 14 A 1011 GLN VAL ALA GLY ALA TYR HIS TYR LEU THR ALA GLY ASN SEQRES 15 A 1011 THR HIS ASN GLN ARG GLY ALA GLY ASN GLY TYR SER TYR SEQRES 16 A 1011 LEU GLY GLY ASP VAL ARG LYS ALA GLY GLU TYR GLY PRO SEQRES 17 A 1011 LEU PRO ILE ALA GLY SER LYS GLY ASP SER GLY SER PRO SEQRES 18 A 1011 MET PHE ILE TYR ASP ALA GLU LYS GLN LYS TRP LEU ILE SEQRES 19 A 1011 ASN GLY ILE LEU ARG GLU GLY ASN PRO PHE GLU GLY LYS SEQRES 20 A 1011 GLU ASN GLY PHE GLN LEU VAL ARG LYS SER TYR PHE ASP SEQRES 21 A 1011 GLU ILE PHE GLU ARG ASP LEU HIS THR SER LEU TYR THR SEQRES 22 A 1011 ARG ALA GLY ASN GLY VAL TYR THR ILE SER GLY ASN ASP SEQRES 23 A 1011 ASN GLY GLN GLY SER ILE THR GLN LYS SER GLY ILE PRO SEQRES 24 A 1011 SER GLU ILE LYS ILE THR LEU ALA ASN MET SER LEU PRO SEQRES 25 A 1011 LEU LYS GLU LYS ASP LYS VAL HIS ASN PRO ARG TYR ASP SEQRES 26 A 1011 GLY PRO ASN ILE TYR SER PRO ARG LEU ASN ASN GLY GLU SEQRES 27 A 1011 THR LEU TYR PHE MET ASP GLN LYS GLN GLY SER LEU ILE SEQRES 28 A 1011 PHE ALA SER ASP ILE ASN GLN GLY ALA GLY GLY LEU TYR SEQRES 29 A 1011 PHE GLU GLY ASN PHE THR VAL SER PRO ASN SER ASN GLN SEQRES 30 A 1011 THR TRP GLN GLY ALA GLY ILE HIS VAL SER GLU ASN SER SEQRES 31 A 1011 THR VAL THR TRP LYS VAL ASN GLY VAL GLU HIS ASP ARG SEQRES 32 A 1011 LEU SER LYS ILE GLY LYS GLY THR LEU HIS VAL GLN ALA SEQRES 33 A 1011 LYS GLY GLU ASN LYS GLY SER ILE SER VAL GLY ASP GLY SEQRES 34 A 1011 LYS VAL ILE LEU GLU GLN GLN ALA ASP ASP GLN GLY ASN SEQRES 35 A 1011 LYS GLN ALA PHE SER GLU ILE GLY LEU VAL SER GLY ARG SEQRES 36 A 1011 GLY THR VAL GLN LEU ASN ASP ASP LYS GLN PHE ASP THR SEQRES 37 A 1011 ASP LYS PHE TYR PHE GLY PHE ARG GLY GLY ARG LEU ASP SEQRES 38 A 1011 LEU ASN GLY HIS SER LEU THR PHE LYS ARG ILE GLN ASN SEQRES 39 A 1011 THR ASP GLU GLY ALA MET ILE VAL ASN HIS ASN THR THR SEQRES 40 A 1011 GLN ALA ALA ASN VAL THR ILE THR GLY ASN GLU SER ILE SEQRES 41 A 1011 VAL LEU PRO ASN GLY ASN ASN ILE ASN LYS LEU ASP TYR SEQRES 42 A 1011 ARG LYS GLU ILE ALA TYR ASN GLY TRP PHE GLY GLU THR SEQRES 43 A 1011 ASP LYS ASN LYS HIS ASN GLY ARG LEU ASN LEU ILE TYR SEQRES 44 A 1011 LYS PRO THR THR GLU ASP ARG THR LEU LEU LEU SER GLY SEQRES 45 A 1011 GLY THR ASN LEU LYS GLY ASP ILE THR GLN THR LYS GLY SEQRES 46 A 1011 LYS LEU PHE PHE SER GLY ARG PRO THR PRO HIS ALA TYR SEQRES 47 A 1011 ASN HIS LEU ASN LYS ARG TRP SER GLU MET GLU GLY ILE SEQRES 48 A 1011 PRO GLN GLY GLU ILE VAL TRP ASP HIS ASP TRP ILE ASN SEQRES 49 A 1011 ARG THR PHE LYS ALA GLU ASN PHE GLN ILE LYS GLY GLY SEQRES 50 A 1011 SER ALA VAL VAL SER ARG ASN VAL SER SER ILE GLU GLY SEQRES 51 A 1011 ASN TRP THR VAL SER ASN ASN ALA ASN ALA THR PHE GLY SEQRES 52 A 1011 VAL VAL PRO ASN GLN GLN ASN THR ILE CYS THR ARG SER SEQRES 53 A 1011 ASP TRP THR GLY LEU THR THR CYS GLN LYS VAL ASP LEU SEQRES 54 A 1011 THR ASP THR LYS VAL ILE ASN SER ILE PRO LYS THR GLN SEQRES 55 A 1011 ILE ASN GLY SER ILE ASN LEU THR ASP ASN ALA THR ALA SEQRES 56 A 1011 ASN VAL LYS GLY LEU ALA LYS LEU ASN GLY ASN VAL THR SEQRES 57 A 1011 LEU THR ASN HIS SER GLN PHE THR LEU SER ASN ASN ALA SEQRES 58 A 1011 THR GLN ILE GLY ASN ILE ARG LEU SER ASP ASN SER THR SEQRES 59 A 1011 ALA THR VAL ASP ASN ALA ASN LEU ASN GLY ASN VAL HIS SEQRES 60 A 1011 LEU THR ASP SER ALA GLN PHE SER LEU LYS ASN SER HIS SEQRES 61 A 1011 PHE SER HIS GLN ILE GLN GLY ASP LYS GLY THR THR VAL SEQRES 62 A 1011 THR LEU GLU ASN ALA THR TRP THR MET PRO SER ASP THR SEQRES 63 A 1011 THR LEU GLN ASN LEU THR LEU ASN ASN SER THR ILE THR SEQRES 64 A 1011 LEU ASN SER ALA TYR SER ALA SER SER ASN ASN THR PRO SEQRES 65 A 1011 ARG ARG ARG SER LEU GLU THR GLU THR THR PRO THR SER SEQRES 66 A 1011 ALA GLU HIS ARG PHE ASN THR LEU THR VAL ASN GLY LYS SEQRES 67 A 1011 LEU SER GLY GLN GLY THR PHE GLN PHE THR SER SER LEU SEQRES 68 A 1011 PHE GLY TYR LYS SER ASP LYS LEU LYS LEU SER ASN ASP SEQRES 69 A 1011 ALA GLU GLY ASP TYR ILE LEU SER VAL ARG ASN THR GLY SEQRES 70 A 1011 LYS GLU PRO GLU THR LEU GLU GLN LEU THR LEU VAL GLU SEQRES 71 A 1011 SER LYS ASP ASN GLN PRO LEU SER ASP LYS LEU LYS PHE SEQRES 72 A 1011 THR LEU GLU ASN ASP HIS VAL ASP ALA GLY ALA LEU ARG SEQRES 73 A 1011 TYR LYS LEU VAL LYS ASN ASP GLY GLU PHE ARG LEU HIS SEQRES 74 A 1011 ASN PRO ILE LYS GLU GLN GLU LEU HIS ASN ASP LEU VAL SEQRES 75 A 1011 ARG ALA GLU GLN ALA GLU ARG THR LEU GLU ALA LYS GLN SEQRES 76 A 1011 VAL GLU PRO THR ALA LYS THR GLN THR GLY GLU PRO LYS SEQRES 77 A 1011 VAL ARG SER ARG ARG ALA ALA ARG ALA ALA PHE PRO ASP SEQRES 78 A 1011 THR LEU PRO ASP GLN SER LEU LEU ASN ALA FORMUL 2 HOH *783(H2 O) HELIX 1 1 ASP A 33 ASN A 43 1 11 HELIX 2 2 ASP A 75 VAL A 79 5 5 HELIX 3 3 ASN A 113 HIS A 117 5 5 HELIX 4 4 ASN A 163 ASP A 169 5 7 HELIX 5 5 ARG A 280 LEU A 292 1 13 HELIX 6 6 ASN A 346 ASP A 350 5 5 HELIX 7 7 SER A 356 ASN A 361 1 6 HELIX 8 8 ASP A 492 ASP A 494 5 3 HELIX 9 9 ASN A 554 ARG A 559 5 6 HELIX 10 10 ASN A 627 GLY A 635 1 9 HELIX 11 11 ASP A 716 ILE A 723 1 8 HELIX 12 12 ASN A 846 SER A 850 5 5 SHEET 1 A 3 HIS A 27 TYR A 29 0 SHEET 2 A 3 GLN A 184 ARG A 187 1 O ARG A 187 N THR A 28 SHEET 3 A 3 GLY A 193 ALA A 197 -1 O ASP A 194 N TRP A 186 SHEET 1 B 2 ILE A 54 TYR A 57 0 SHEET 2 B 2 LEU A 63 SER A 67 -1 O SER A 67 N ILE A 54 SHEET 1 C 2 ALA A 86 GLU A 89 0 SHEET 2 C 2 TYR A 92 VAL A 94 -1 O TYR A 92 N VAL A 88 SHEET 1 D 3 ASP A 104 VAL A 105 0 SHEET 2 D 3 TYR A 121 LYS A 125 -1 O TYR A 121 N VAL A 105 SHEET 3 D 3 ARG A 145 LEU A 146 -1 O ARG A 145 N LYS A 125 SHEET 1 E 7 THR A 204 ASN A 207 0 SHEET 2 E 7 ARG A 176 GLY A 180 -1 N GLY A 180 O THR A 204 SHEET 3 E 7 PRO A 246 ASP A 251 -1 O PHE A 248 N VAL A 177 SHEET 4 E 7 LYS A 256 LEU A 263 -1 O ASN A 260 N MET A 247 SHEET 5 E 7 ASN A 274 LEU A 278 -1 O GLN A 277 N ILE A 262 SHEET 6 E 7 TYR A 218 LEU A 221 -1 N LEU A 221 O ASN A 274 SHEET 7 E 7 GLN A 211 GLY A 215 -1 N GLY A 213 O TYR A 220 SHEET 1 F13 THR A 294 TYR A 297 0 SHEET 2 F13 LEU A 365 MET A 368 1 O TYR A 366 N LEU A 296 SHEET 3 F13 LEU A 388 GLU A 391 1 O GLU A 391 N PHE A 367 SHEET 4 F13 ILE A 409 VAL A 411 1 O HIS A 410 N LEU A 388 SHEET 5 F13 ARG A 428 ILE A 432 1 O SER A 430 N ILE A 409 SHEET 6 F13 SER A 448 LEU A 458 1 O SER A 450 N LEU A 429 SHEET 7 F13 THR A 436 VAL A 439 1 N LEU A 437 O LYS A 455 SHEET 8 F13 THR A 416 TRP A 419 1 N VAL A 417 O THR A 436 SHEET 9 F13 PHE A 394 PRO A 398 1 N PHE A 394 O THR A 418 SHEET 10 F13 GLY A 373 PHE A 377 1 N PHE A 377 O SER A 397 SHEET 11 F13 VAL A 304 ASN A 310 1 N ILE A 307 O ILE A 376 SHEET 12 F13 ASN A 312 GLN A 319 -1 O THR A 318 N THR A 306 SHEET 13 F13 GLU A 326 ASN A 333 -1 O ILE A 327 N ILE A 317 SHEET 1 G 9 THR A 294 TYR A 297 0 SHEET 2 G 9 LEU A 365 MET A 368 1 O TYR A 366 N LEU A 296 SHEET 3 G 9 LEU A 388 GLU A 391 1 O GLU A 391 N PHE A 367 SHEET 4 G 9 ILE A 409 VAL A 411 1 O HIS A 410 N LEU A 388 SHEET 5 G 9 ARG A 428 ILE A 432 1 O SER A 430 N ILE A 409 SHEET 6 G 9 SER A 448 LEU A 458 1 O SER A 450 N LEU A 429 SHEET 7 G 9 ILE A 474 LEU A 485 1 O GLY A 475 N VAL A 451 SHEET 8 G 9 PHE A 496 PHE A 498 1 O TYR A 497 N ILE A 474 SHEET 9 G 9 GLN A 518 ASN A 519 1 O GLN A 518 N PHE A 498 SHEET 1 H19 GLU A 326 ASN A 333 0 SHEET 2 H19 ASN A 312 GLN A 319 -1 N ILE A 317 O ILE A 327 SHEET 3 H19 VAL A 304 ASN A 310 -1 N THR A 306 O THR A 318 SHEET 4 H19 GLY A 373 PHE A 377 1 O ILE A 376 N ILE A 307 SHEET 5 H19 PHE A 394 PRO A 398 1 O SER A 397 N PHE A 377 SHEET 6 H19 THR A 416 TRP A 419 1 O THR A 418 N PHE A 394 SHEET 7 H19 THR A 436 VAL A 439 1 O THR A 436 N VAL A 417 SHEET 8 H19 SER A 448 LEU A 458 1 O LYS A 455 N LEU A 437 SHEET 9 H19 ILE A 474 LEU A 485 1 O GLY A 475 N VAL A 451 SHEET 10 H19 GLY A 503 ASP A 506 1 O ASP A 506 N VAL A 483 SHEET 11 H19 ALA A 524 VAL A 527 1 O MET A 525 N LEU A 505 SHEET 12 H19 TRP A 567 PHE A 568 1 O TRP A 567 N ALA A 524 SHEET 13 H19 GLY A 598 ASN A 600 1 O ASN A 600 N PHE A 568 SHEET 14 H19 ARG A 650 ILE A 659 1 O LYS A 653 N THR A 599 SHEET 15 H19 VAL A 670 VAL A 679 1 O THR A 678 N PHE A 657 SHEET 16 H19 THR A 726 ASN A 729 1 O ASN A 729 N ILE A 673 SHEET 17 H19 ALA A 746 LEU A 748 1 O LYS A 747 N THR A 726 SHEET 18 H19 THR A 767 ILE A 769 1 O ILE A 769 N LEU A 748 SHEET 19 H19 ASN A 786 ASN A 788 1 O ASN A 788 N GLN A 768 SHEET 1 I11 LEU A 512 PHE A 514 0 SHEET 2 I11 ALA A 535 ILE A 539 1 O THR A 538 N PHE A 514 SHEET 3 I11 LEU A 580 TYR A 584 1 O ILE A 583 N ILE A 539 SHEET 4 I11 ASP A 604 GLN A 607 1 O THR A 606 N TYR A 584 SHEET 5 I11 ARG A 650 ILE A 659 1 O GLN A 658 N ILE A 605 SHEET 6 I11 VAL A 670 VAL A 679 1 O THR A 678 N PHE A 657 SHEET 7 I11 ILE A 732 LEU A 734 1 O ASN A 733 N VAL A 679 SHEET 8 I11 VAL A 752 LEU A 754 1 O THR A 753 N LEU A 734 SHEET 9 I11 ILE A 772 LEU A 774 1 O ARG A 773 N LEU A 754 SHEET 10 I11 VAL A 791 LEU A 793 1 O HIS A 792 N LEU A 774 SHEET 11 I11 ILE A 810 GLY A 812 1 O GLN A 811 N LEU A 793 SHEET 1 J 2 GLU A 340 LYS A 341 0 SHEET 2 J 2 ILE A 354 TYR A 355 -1 O TYR A 355 N GLU A 340 SHEET 1 K 2 ILE A 381 ASN A 382 0 SHEET 2 K 2 TRP A 404 GLN A 405 1 O GLN A 405 N ILE A 381 SHEET 1 L13 GLU A 561 TYR A 564 0 SHEET 2 L13 THR A 592 LEU A 595 1 O LEU A 594 N TYR A 564 SHEET 3 L13 LYS A 611 PHE A 614 1 O PHE A 613 N LEU A 593 SHEET 4 L13 SER A 663 VAL A 666 1 O VAL A 665 N LEU A 612 SHEET 5 L13 ASN A 684 PHE A 687 1 O THR A 686 N VAL A 666 SHEET 6 L13 THR A 739 LYS A 743 1 O ASN A 741 N PHE A 687 SHEET 7 L13 GLN A 759 SER A 763 1 O THR A 761 N VAL A 742 SHEET 8 L13 THR A 779 ASP A 783 1 O THR A 781 N LEU A 762 SHEET 9 L13 GLN A 798 LYS A 802 1 O SER A 800 N ALA A 780 SHEET 10 L13 THR A 817 GLU A 821 1 O THR A 819 N LEU A 801 SHEET 11 L13 ASN A 835 THR A 844 1 O THR A 837 N LEU A 820 SHEET 12 L13 LEU A 884 SER A 895 1 O SER A 885 N LEU A 838 SHEET 13 L13 LYS A 900 SER A 901 -1 O LYS A 900 N SER A 895 SHEET 1 M 6 HIS A 805 PHE A 806 0 SHEET 2 M 6 THR A 824 THR A 826 1 O THR A 826 N PHE A 806 SHEET 3 M 6 ASN A 835 THR A 844 1 O THR A 844 N TRP A 825 SHEET 4 M 6 LEU A 884 SER A 895 1 O SER A 885 N LEU A 838 SHEET 5 M 6 GLY A 912 ASN A 920 1 O SER A 917 N PHE A 892 SHEET 6 M 6 LEU A 946 LEU A 950 1 O THR A 949 N LEU A 916 SHEET 1 N 2 ARG A 617 PRO A 618 0 SHEET 2 N 2 TRP A 647 ILE A 648 -1 O ILE A 648 N ARG A 617 SHEET 1 O 2 GLN A 694 ARG A 700 0 SHEET 2 O 2 THR A 707 ASP A 713 -1 O GLN A 710 N ILE A 697 SHEET 1 P 7 THR A 831 LEU A 833 0 SHEET 2 P 7 THR A 877 VAL A 880 1 O THR A 879 N THR A 831 SHEET 3 P 7 LYS A 903 LEU A 906 1 O LYS A 905 N VAL A 880 SHEET 4 P 7 LEU A 931 SER A 936 1 O GLU A 935 N LEU A 906 SHEET 5 P 7 GLU A 970 HIS A 974 -1 O LEU A 973 N LEU A 931 SHEET 6 P 7 LEU A 960 ASN A 967 -1 N LYS A 963 O HIS A 974 SHEET 7 P 7 VAL A 955 ALA A 957 -1 N VAL A 955 O TYR A 962 SSBOND 1 CYS A 698 CYS A 709 1555 1555 2.05 CISPEP 1 ILE A 323 PRO A 324 0 11.29 CRYST1 41.410 137.200 209.580 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024149 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004771 0.00000