HEADER CHAPERONE 18-JUL-11 3SYK TITLE CRYSTAL STRUCTURE OF THE AAA+ PROTEIN CBBX, SELENOMETHIONINE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN CBBX; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 3 ORGANISM_TAXID: 1063; SOURCE 4 STRAIN: KD131 / KCTC 12085; SOURCE 5 GENE: CBBX, RSKD131_2679; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHUE KEYWDS PHOTOSYNTHESIS, RUBISCO ACTIVASE, AAA+ PROTEIN, CALVIN CYCLE, KEYWDS 2 CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR O.MUELLER-CAJAR,M.STOTZ,P.WENDLER,F.U.HARTL,A.BRACHER,M.HAYER-HARTL REVDAT 5 30-OCT-24 3SYK 1 REMARK REVDAT 4 20-NOV-19 3SYK 1 REMARK SEQADV LINK REVDAT 3 30-JUL-14 3SYK 1 REMARK REVDAT 2 23-NOV-11 3SYK 1 JRNL REVDAT 1 09-NOV-11 3SYK 0 JRNL AUTH O.MUELLER-CAJAR,M.STOTZ,P.WENDLER,F.U.HARTL,A.BRACHER, JRNL AUTH 2 M.HAYER-HARTL JRNL TITL STRUCTURE AND FUNCTION OF THE AAA+ PROTEIN CBBX, A RED-TYPE JRNL TITL 2 RUBISCO ACTIVASE. JRNL REF NATURE V. 479 194 2011 JRNL REFN ISSN 0028-0836 JRNL PMID 22048315 JRNL DOI 10.1038/NATURE10568 REMARK 2 REMARK 2 RESOLUTION. 3.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 752 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.08 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 903 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4305 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.497 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.397 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.704 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.839 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4401 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5970 ; 1.076 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 570 ; 4.837 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;36.242 ;23.057 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 684 ;19.599 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;17.826 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 682 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3343 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1925 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2978 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 150 ; 0.127 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.178 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.119 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2902 ; 0.459 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4481 ; 0.791 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1639 ; 1.039 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1489 ; 1.611 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066812. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14768 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.081 REMARK 200 RESOLUTION RANGE LOW (A) : 43.883 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.32200 REMARK 200 R SYM FOR SHELL (I) : 0.32200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, RESOLVE 2.13, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M (NH4)2SO4, 0.05 M MES-NAOH PH REMARK 280 6.5, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.38500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.48200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.99650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.48200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.38500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.99650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ANALYSIS OF THE CBBX PROTEIN IN SOLUTION AND EM STUDIES REMARK 300 SUGGEST THAT THE BIOLOGICALLY ACTIVE OLIGOMER IS A HEXAMER, BUT IT REMARK 300 CANNOT BE GENERATED BY THE APPLICATION OF SYMMETRY OPERATORS TO THE REMARK 300 CHAINS IN THE COORDINATE FILE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -38.38500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 140.98950 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 106.96400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 147 REMARK 465 GLU A 148 REMARK 465 ARG A 149 REMARK 465 SER A 270 REMARK 465 SER A 271 REMARK 465 GLY A 272 REMARK 465 LEU A 297 REMARK 465 ASP A 298 REMARK 465 SER A 299 REMARK 465 GLU A 300 REMARK 465 ARG A 301 REMARK 465 ARG A 302 REMARK 465 ALA A 303 REMARK 465 ALA A 304 REMARK 465 GLU A 305 REMARK 465 ALA A 306 REMARK 465 LEU A 307 REMARK 465 ALA A 308 REMARK 465 ARG A 309 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 THR B 6 REMARK 465 ALA B 7 REMARK 465 PRO B 8 REMARK 465 ALA B 62 REMARK 465 HIS B 63 REMARK 465 GLU B 64 REMARK 465 LEU B 297 REMARK 465 ASP B 298 REMARK 465 SER B 299 REMARK 465 GLU B 300 REMARK 465 ARG B 301 REMARK 465 ARG B 302 REMARK 465 ALA B 303 REMARK 465 ALA B 304 REMARK 465 GLU B 305 REMARK 465 ALA B 306 REMARK 465 LEU B 307 REMARK 465 ALA B 308 REMARK 465 ARG B 309 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 6 OG1 CG2 REMARK 470 SER A 10 OG REMARK 470 ARG A 14 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 34 CG1 CG2 CD1 REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 ARG A 44 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 ARG A 98 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 ARG A 107 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 113 CG CD OE1 NE2 REMARK 470 TYR A 114 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 115 CG1 CG2 CD1 REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 146 CG OD1 OD2 REMARK 470 ASP A 150 CG OD1 OD2 REMARK 470 GLN A 161 CG CD OE1 NE2 REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 ASN A 165 CG OD1 ND2 REMARK 470 ARG A 180 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 194 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 GLN A 223 CG CD OE1 NE2 REMARK 470 ARG A 252 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 277 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 SER B 10 OG REMARK 470 SER B 20 OG REMARK 470 GLU B 24 CG CD OE1 OE2 REMARK 470 ILE B 34 CG1 CG2 CD1 REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 GLN B 57 CG CD OE1 NE2 REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 THR B 65 OG1 CG2 REMARK 470 ARG B 98 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 113 CG CD OE1 NE2 REMARK 470 TYR B 114 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE B 115 CG1 CG2 CD1 REMARK 470 HIS B 117 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 ASP B 146 CG OD1 OD2 REMARK 470 ASN B 147 CG OD1 ND2 REMARK 470 GLU B 148 CG CD OE1 OE2 REMARK 470 ARG B 149 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 150 CG OD1 OD2 REMARK 470 GLN B 153 CG CD OE1 NE2 REMARK 470 GLN B 161 CG CD OE1 NE2 REMARK 470 ASN B 165 CG OD1 ND2 REMARK 470 ASN B 166 CG OD1 ND2 REMARK 470 ARG B 167 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 168 CG OD1 OD2 REMARK 470 GLU B 207 CG CD OE1 OE2 REMARK 470 GLN B 223 CG CD OE1 NE2 REMARK 470 ARG B 249 CG CD NE CZ NH1 NH2 REMARK 470 SER B 270 OG REMARK 470 SER B 271 OG REMARK 470 ARG B 277 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 291 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 294 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 64 -167.39 -109.21 REMARK 500 ARG A 98 -73.16 -59.53 REMARK 500 GLN A 113 -87.23 -75.90 REMARK 500 ALA A 139 -19.14 -49.04 REMARK 500 PRO A 145 33.01 -77.06 REMARK 500 ASN A 165 -73.22 -69.28 REMARK 500 ASP A 169 -55.89 -125.90 REMARK 500 PRO A 226 -36.55 -39.52 REMARK 500 ASN A 247 -129.40 38.62 REMARK 500 PHE A 267 -38.90 -38.51 REMARK 500 THR A 268 -80.69 -71.32 REMARK 500 PRO B 66 -152.10 -85.96 REMARK 500 THR B 67 119.22 -166.93 REMARK 500 HIS B 117 42.84 -99.12 REMARK 500 MSE B 130 135.30 -39.55 REMARK 500 TYR B 140 -15.97 -49.66 REMARK 500 GLU B 164 -75.53 -74.34 REMARK 500 ASN B 165 -87.37 -74.27 REMARK 500 ASN B 166 66.85 -62.40 REMARK 500 ASN B 188 78.91 -118.18 REMARK 500 ASN B 221 60.90 67.29 REMARK 500 ASN B 247 -113.72 51.43 REMARK 500 SER B 270 61.92 15.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 312 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SYL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE AAA+ PROTEIN CBBX, NATIVE STRUCTURE REMARK 900 RELATED ID: 3ZUH RELATED DB: PDB REMARK 900 CBBX HEXAMER STRUCTURE REMARK 900 RELATED ID: EMD-1932 RELATED DB: EMDB REMARK 900 NEGATIVE STAIN-EM MAP OF CBBX HEXAMER DBREF 3SYK A 2 309 UNP P95648 CBBX_RHOSH 2 309 DBREF 3SYK B 2 309 UNP P95648 CBBX_RHOSH 2 309 SEQADV 3SYK MSE A 1 UNP P95648 INITIATING METHIONINE SEQADV 3SYK ILE A 282 UNP P95648 MET 282 ENGINEERED MUTATION SEQADV 3SYK MSE B 1 UNP P95648 INITIATING METHIONINE SEQADV 3SYK ILE B 282 UNP P95648 MET 282 ENGINEERED MUTATION SEQRES 1 A 309 MSE THR ASP ALA ALA THR ALA PRO THR SER ILE ASP LEU SEQRES 2 A 309 ARG ALA GLU TYR GLU GLY SER GLY ALA LYS GLU VAL LEU SEQRES 3 A 309 GLU GLU LEU ASP ARG GLU LEU ILE GLY LEU LYS PRO VAL SEQRES 4 A 309 LYS ASP ARG ILE ARG GLU THR ALA ALA LEU LEU LEU VAL SEQRES 5 A 309 GLU ARG ALA ARG GLN LYS LEU GLY LEU ALA HIS GLU THR SEQRES 6 A 309 PRO THR LEU HIS MSE SER PHE THR GLY ASN PRO GLY THR SEQRES 7 A 309 GLY LYS THR THR VAL ALA LEU LYS MSE ALA GLY LEU LEU SEQRES 8 A 309 HIS ARG LEU GLY TYR VAL ARG LYS GLY HIS LEU VAL SER SEQRES 9 A 309 VAL THR ARG ASP ASP LEU VAL GLY GLN TYR ILE GLY HIS SEQRES 10 A 309 THR ALA PRO LYS THR LYS GLU VAL LEU LYS ARG ALA MSE SEQRES 11 A 309 GLY GLY VAL LEU PHE ILE ASP GLU ALA TYR TYR LEU TYR SEQRES 12 A 309 ARG PRO ASP ASN GLU ARG ASP TYR GLY GLN GLU ALA ILE SEQRES 13 A 309 GLU ILE LEU LEU GLN VAL MSE GLU ASN ASN ARG ASP ASP SEQRES 14 A 309 LEU VAL VAL ILE LEU ALA GLY TYR ALA ASP ARG MSE GLU SEQRES 15 A 309 ASN PHE PHE GLN SER ASN PRO GLY PHE ARG SER ARG ILE SEQRES 16 A 309 ALA HIS HIS ILE GLU PHE PRO ASP TYR SER ASP GLU GLU SEQRES 17 A 309 LEU PHE GLU ILE ALA GLY HIS MSE LEU ASP ASP GLN ASN SEQRES 18 A 309 TYR GLN MSE THR PRO GLU ALA GLU THR ALA LEU ARG ALA SEQRES 19 A 309 TYR ILE GLY LEU ARG ARG ASN GLN PRO HIS PHE ALA ASN SEQRES 20 A 309 ALA ARG SER ILE ARG ASN ALA LEU ASP ARG ALA ARG LEU SEQRES 21 A 309 ARG GLN ALA ASN ARG LEU PHE THR ALA SER SER GLY PRO SEQRES 22 A 309 LEU ASP ALA ARG ALA LEU SER THR ILE ALA GLU GLU ASP SEQRES 23 A 309 ILE ARG ALA SER ARG VAL PHE LYS GLY GLY LEU ASP SER SEQRES 24 A 309 GLU ARG ARG ALA ALA GLU ALA LEU ALA ARG SEQRES 1 B 309 MSE THR ASP ALA ALA THR ALA PRO THR SER ILE ASP LEU SEQRES 2 B 309 ARG ALA GLU TYR GLU GLY SER GLY ALA LYS GLU VAL LEU SEQRES 3 B 309 GLU GLU LEU ASP ARG GLU LEU ILE GLY LEU LYS PRO VAL SEQRES 4 B 309 LYS ASP ARG ILE ARG GLU THR ALA ALA LEU LEU LEU VAL SEQRES 5 B 309 GLU ARG ALA ARG GLN LYS LEU GLY LEU ALA HIS GLU THR SEQRES 6 B 309 PRO THR LEU HIS MSE SER PHE THR GLY ASN PRO GLY THR SEQRES 7 B 309 GLY LYS THR THR VAL ALA LEU LYS MSE ALA GLY LEU LEU SEQRES 8 B 309 HIS ARG LEU GLY TYR VAL ARG LYS GLY HIS LEU VAL SER SEQRES 9 B 309 VAL THR ARG ASP ASP LEU VAL GLY GLN TYR ILE GLY HIS SEQRES 10 B 309 THR ALA PRO LYS THR LYS GLU VAL LEU LYS ARG ALA MSE SEQRES 11 B 309 GLY GLY VAL LEU PHE ILE ASP GLU ALA TYR TYR LEU TYR SEQRES 12 B 309 ARG PRO ASP ASN GLU ARG ASP TYR GLY GLN GLU ALA ILE SEQRES 13 B 309 GLU ILE LEU LEU GLN VAL MSE GLU ASN ASN ARG ASP ASP SEQRES 14 B 309 LEU VAL VAL ILE LEU ALA GLY TYR ALA ASP ARG MSE GLU SEQRES 15 B 309 ASN PHE PHE GLN SER ASN PRO GLY PHE ARG SER ARG ILE SEQRES 16 B 309 ALA HIS HIS ILE GLU PHE PRO ASP TYR SER ASP GLU GLU SEQRES 17 B 309 LEU PHE GLU ILE ALA GLY HIS MSE LEU ASP ASP GLN ASN SEQRES 18 B 309 TYR GLN MSE THR PRO GLU ALA GLU THR ALA LEU ARG ALA SEQRES 19 B 309 TYR ILE GLY LEU ARG ARG ASN GLN PRO HIS PHE ALA ASN SEQRES 20 B 309 ALA ARG SER ILE ARG ASN ALA LEU ASP ARG ALA ARG LEU SEQRES 21 B 309 ARG GLN ALA ASN ARG LEU PHE THR ALA SER SER GLY PRO SEQRES 22 B 309 LEU ASP ALA ARG ALA LEU SER THR ILE ALA GLU GLU ASP SEQRES 23 B 309 ILE ARG ALA SER ARG VAL PHE LYS GLY GLY LEU ASP SER SEQRES 24 B 309 GLU ARG ARG ALA ALA GLU ALA LEU ALA ARG MODRES 3SYK MSE A 1 MET SELENOMETHIONINE MODRES 3SYK MSE A 70 MET SELENOMETHIONINE MODRES 3SYK MSE A 87 MET SELENOMETHIONINE MODRES 3SYK MSE A 130 MET SELENOMETHIONINE MODRES 3SYK MSE A 163 MET SELENOMETHIONINE MODRES 3SYK MSE A 181 MET SELENOMETHIONINE MODRES 3SYK MSE A 216 MET SELENOMETHIONINE MODRES 3SYK MSE A 224 MET SELENOMETHIONINE MODRES 3SYK MSE B 70 MET SELENOMETHIONINE MODRES 3SYK MSE B 87 MET SELENOMETHIONINE MODRES 3SYK MSE B 130 MET SELENOMETHIONINE MODRES 3SYK MSE B 163 MET SELENOMETHIONINE MODRES 3SYK MSE B 181 MET SELENOMETHIONINE MODRES 3SYK MSE B 216 MET SELENOMETHIONINE MODRES 3SYK MSE B 224 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 70 8 HET MSE A 87 8 HET MSE A 130 8 HET MSE A 163 8 HET MSE A 181 8 HET MSE A 216 8 HET MSE A 224 8 HET MSE B 70 8 HET MSE B 87 8 HET MSE B 130 8 HET MSE B 163 8 HET MSE B 181 8 HET MSE B 216 8 HET MSE B 224 8 HET SO4 A 310 5 HET SO4 A 311 5 HET SO4 A 312 5 HET SO4 B 310 5 HET SO4 B 311 5 HET SO4 B 312 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 HOH *23(H2 O) HELIX 1 1 ASP A 12 SER A 20 1 9 HELIX 2 2 GLY A 21 LEU A 33 1 13 HELIX 3 3 LEU A 36 LEU A 59 1 24 HELIX 4 4 GLY A 79 LEU A 94 1 16 HELIX 5 5 THR A 106 LEU A 110 5 5 HELIX 6 6 HIS A 117 MSE A 130 1 14 HELIX 7 7 ALA A 139 TYR A 143 5 5 HELIX 8 8 TYR A 151 ASN A 166 1 16 HELIX 9 9 TYR A 177 ASN A 188 1 12 HELIX 10 10 GLY A 190 ARG A 194 1 5 HELIX 11 11 SER A 205 GLN A 220 1 16 HELIX 12 12 THR A 225 ARG A 240 1 16 HELIX 13 13 ALA A 246 ALA A 269 1 24 HELIX 14 14 ALA A 276 SER A 280 1 5 HELIX 15 15 GLU A 284 ALA A 289 1 6 HELIX 16 16 SER A 290 GLY A 295 1 6 HELIX 17 17 ASP B 12 SER B 20 1 9 HELIX 18 18 GLY B 21 LEU B 33 1 13 HELIX 19 19 LEU B 36 LEU B 59 1 24 HELIX 20 20 GLY B 79 LEU B 94 1 16 HELIX 21 21 THR B 106 LEU B 110 5 5 HELIX 22 22 THR B 118 MSE B 130 1 13 HELIX 23 23 ALA B 139 TYR B 143 5 5 HELIX 24 24 TYR B 151 ASN B 165 1 15 HELIX 25 25 TYR B 177 ASN B 188 1 12 HELIX 26 26 SER B 205 ASN B 221 1 17 HELIX 27 27 THR B 225 ASN B 241 1 17 HELIX 28 28 ASN B 247 SER B 270 1 24 HELIX 29 29 ASP B 275 SER B 280 1 6 HELIX 30 30 ALA B 283 ALA B 289 1 7 HELIX 31 31 SER B 290 GLY B 295 1 6 SHEET 1 A 5 LEU A 102 VAL A 105 0 SHEET 2 A 5 VAL A 133 ASP A 137 1 O VAL A 133 N VAL A 103 SHEET 3 A 5 VAL A 171 GLY A 176 1 O ILE A 173 N LEU A 134 SHEET 4 A 5 HIS A 69 THR A 73 1 N PHE A 72 O LEU A 174 SHEET 5 A 5 ILE A 195 GLU A 200 1 O HIS A 197 N SER A 71 SHEET 1 B 2 GLN A 223 MSE A 224 0 SHEET 2 B 2 THR A 281 ILE A 282 1 O ILE A 282 N GLN A 223 SHEET 1 C 2 LEU A 274 ASP A 275 0 SHEET 2 C 2 SER B 10 ILE B 11 -1 O ILE B 11 N LEU A 274 SHEET 1 D 5 LEU B 102 VAL B 105 0 SHEET 2 D 5 VAL B 133 ASP B 137 1 O VAL B 133 N VAL B 103 SHEET 3 D 5 VAL B 171 GLY B 176 1 O VAL B 171 N LEU B 134 SHEET 4 D 5 MSE B 70 GLY B 74 1 N PHE B 72 O LEU B 174 SHEET 5 D 5 HIS B 197 PHE B 201 1 O PHE B 201 N THR B 73 SHEET 1 E 2 GLN B 223 MSE B 224 0 SHEET 2 E 2 THR B 281 ILE B 282 1 O ILE B 282 N GLN B 223 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C HIS A 69 N MSE A 70 1555 1555 1.33 LINK C MSE A 70 N SER A 71 1555 1555 1.33 LINK C LYS A 86 N MSE A 87 1555 1555 1.34 LINK C MSE A 87 N ALA A 88 1555 1555 1.34 LINK C ALA A 129 N MSE A 130 1555 1555 1.34 LINK C MSE A 130 N GLY A 131 1555 1555 1.32 LINK C VAL A 162 N MSE A 163 1555 1555 1.33 LINK C MSE A 163 N GLU A 164 1555 1555 1.33 LINK C ARG A 180 N MSE A 181 1555 1555 1.33 LINK C MSE A 181 N GLU A 182 1555 1555 1.33 LINK C HIS A 215 N MSE A 216 1555 1555 1.33 LINK C MSE A 216 N LEU A 217 1555 1555 1.33 LINK C GLN A 223 N MSE A 224 1555 1555 1.33 LINK C MSE A 224 N THR A 225 1555 1555 1.33 LINK C HIS B 69 N MSE B 70 1555 1555 1.33 LINK C MSE B 70 N SER B 71 1555 1555 1.33 LINK C LYS B 86 N MSE B 87 1555 1555 1.33 LINK C MSE B 87 N ALA B 88 1555 1555 1.33 LINK C ALA B 129 N MSE B 130 1555 1555 1.33 LINK C MSE B 130 N GLY B 131 1555 1555 1.33 LINK C VAL B 162 N MSE B 163 1555 1555 1.33 LINK C MSE B 163 N GLU B 164 1555 1555 1.34 LINK C ARG B 180 N MSE B 181 1555 1555 1.33 LINK C MSE B 181 N GLU B 182 1555 1555 1.33 LINK C HIS B 215 N MSE B 216 1555 1555 1.33 LINK C MSE B 216 N LEU B 217 1555 1555 1.33 LINK C GLN B 223 N MSE B 224 1555 1555 1.33 LINK C MSE B 224 N THR B 225 1555 1555 1.33 SITE 1 AC1 6 ASN A 75 GLY A 77 THR A 78 GLY A 79 SITE 2 AC1 6 LYS A 80 THR A 81 SITE 1 AC2 4 ARG A 239 SER A 250 ASN A 253 ARG A 257 SITE 1 AC3 5 ARG A 257 ARG A 261 SER A 290 ARG A 291 SITE 2 AC3 5 HOH A 321 SITE 1 AC4 5 GLY B 77 THR B 78 GLY B 79 LYS B 80 SITE 2 AC4 5 THR B 81 SITE 1 AC5 4 ARG B 239 SER B 250 ASN B 253 ARG B 257 SITE 1 AC6 4 ARG B 257 ARG B 261 SER B 290 ARG B 291 CRYST1 76.770 93.993 106.964 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013026 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010639 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009349 0.00000 HETATM 1 N MSE A 1 41.351 25.809 15.187 1.00 79.82 N HETATM 2 CA MSE A 1 40.695 26.721 16.161 1.00 79.82 C HETATM 3 C MSE A 1 40.093 25.888 17.292 1.00 78.79 C HETATM 4 O MSE A 1 39.055 25.247 17.119 1.00 78.68 O HETATM 5 CB MSE A 1 39.609 27.552 15.464 1.00 80.55 C HETATM 6 CG MSE A 1 39.589 29.048 15.813 1.00 83.67 C HETATM 7 SE MSE A 1 39.687 29.515 17.727 1.00 92.09 SE HETATM 8 CE MSE A 1 38.135 28.519 18.411 1.00 89.83 C