HEADER OXIDOREDUCTASE 18-JUL-11 3SZ0 TITLE CRYSTAL STRUCTURE OF SULFIDE:QUINONE OXIDOREDUCTASE FROM TITLE 2 ACIDITHIOBACILLUS FERROOXIDANS IN COMPLEX WITH SODIUM SELENIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFIDE-QUINONE REDUCTASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACIDITHIOBACILLUS FERROOXIDANS; SOURCE 3 ORGANISM_TAXID: 243159; SOURCE 4 STRAIN: ATCC 23270 / DSM 14882 / NCIB 8455; SOURCE 5 GENE: AFE_1792; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SULFIDE:QUINONE OXIDOREDUCTASE, INTEGRAL MONOTOPIC MEMBRANE PROTEIN, KEYWDS 2 COMPLEX WITH SELENIDE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.M.CHERNEY,Y.ZHANG,M.N.G.JAMES,J.H.WEINER REVDAT 3 25-JUL-12 3SZ0 1 REMARK REVDAT 2 13-JUN-12 3SZ0 1 JRNL REVDAT 1 16-MAY-12 3SZ0 0 JRNL AUTH M.M.CHERNEY,Y.ZHANG,M.N.JAMES,J.H.WEINER JRNL TITL STRUCTURE-ACTIVITY CHARACTERIZATION OF SULFIDE:QUINONE JRNL TITL 2 OXIDOREDUCTASE VARIANTS. JRNL REF J.STRUCT.BIOL. V. 178 319 2012 JRNL REFN ISSN 1047-8477 JRNL PMID 22542586 JRNL DOI 10.1016/J.JSB.2012.04.007 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 3 NUMBER OF REFLECTIONS : 27006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1378 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2811 - 5.6308 0.98 2917 141 0.1694 0.1982 REMARK 3 2 5.6308 - 4.4708 0.98 2906 168 0.1228 0.1644 REMARK 3 3 4.4708 - 3.9061 0.99 2669 165 0.1264 0.1643 REMARK 3 4 3.9061 - 3.5492 0.77 1987 127 0.1509 0.1564 REMARK 3 5 3.5492 - 3.2949 0.81 2418 110 0.1612 0.2276 REMARK 3 6 3.2949 - 3.1007 0.99 2899 190 0.1649 0.2456 REMARK 3 7 3.1007 - 2.9454 1.00 2923 173 0.1800 0.2344 REMARK 3 8 2.9454 - 2.8172 0.99 2956 138 0.1811 0.2596 REMARK 3 9 2.8172 - 2.7088 1.00 2943 147 0.2070 0.3083 REMARK 3 10 2.7088 - 2.6153 0.57 1700 85 0.1949 0.2437 REMARK 3 11 2.6153 - 2.5336 1.00 2946 161 0.2039 0.3065 REMARK 3 12 2.5336 - 2.4612 1.00 2969 142 0.2065 0.2857 REMARK 3 13 2.4612 - 2.3964 1.00 2939 161 0.2239 0.3019 REMARK 3 14 2.3964 - 2.3379 1.00 2909 160 0.2046 0.2755 REMARK 3 15 2.3379 - 2.2848 1.00 2988 148 0.2131 0.2486 REMARK 3 16 2.2848 - 2.2361 1.00 1163 61 0.2166 0.3065 REMARK 3 17 2.2361 - 2.1914 1.00 2893 141 0.2321 0.2784 REMARK 3 18 2.1914 - 2.1501 1.00 2963 159 0.2589 0.3281 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 55.27 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.690 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.78020 REMARK 3 B22 (A**2) : -3.78020 REMARK 3 B33 (A**2) : 7.56040 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3405 REMARK 3 ANGLE : 1.197 4615 REMARK 3 CHIRALITY : 0.076 492 REMARK 3 PLANARITY : 0.008 583 REMARK 3 DIHEDRAL : 16.524 1269 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resseq 1:161) REMARK 3 ORIGIN FOR THE GROUP (A): 40.6105 -26.7811 12.2407 REMARK 3 T TENSOR REMARK 3 T11: 0.2648 T22: 0.3177 REMARK 3 T33: 0.1444 T12: -0.0763 REMARK 3 T13: 0.0208 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 2.3873 L22: 2.7712 REMARK 3 L33: 1.1585 L12: 1.1629 REMARK 3 L13: -0.4355 L23: -0.9365 REMARK 3 S TENSOR REMARK 3 S11: 0.0987 S12: -0.3274 S13: -0.0332 REMARK 3 S21: 0.5151 S22: -0.1134 S23: 0.0272 REMARK 3 S31: -0.0462 S32: -0.1823 S33: 0.0161 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resseq 162:232) REMARK 3 ORIGIN FOR THE GROUP (A): 64.3751 -17.0671 6.1315 REMARK 3 T TENSOR REMARK 3 T11: 0.2174 T22: 0.2692 REMARK 3 T33: 0.6194 T12: -0.1082 REMARK 3 T13: -0.1618 T23: 0.1280 REMARK 3 L TENSOR REMARK 3 L11: 2.3460 L22: 2.1282 REMARK 3 L33: 0.4149 L12: 0.1023 REMARK 3 L13: -0.2457 L23: -0.2343 REMARK 3 S TENSOR REMARK 3 S11: 0.2219 S12: -0.2482 S13: -0.0318 REMARK 3 S21: 0.2721 S22: -0.4797 S23: -1.5199 REMARK 3 S31: -0.0741 S32: 0.2241 S33: 0.1265 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resseq 233:341) REMARK 3 ORIGIN FOR THE GROUP (A): 45.7898 -25.9127 -2.5391 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.2957 REMARK 3 T33: 0.1558 T12: -0.0461 REMARK 3 T13: 0.0418 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 3.1347 L22: 2.5784 REMARK 3 L33: 0.9928 L12: 1.2186 REMARK 3 L13: 0.0901 L23: -0.6219 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: 0.2239 S13: -0.0817 REMARK 3 S21: -0.2641 S22: 0.0246 S23: -0.2349 REMARK 3 S31: 0.1721 S32: -0.1526 S33: -0.0423 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resseq 342:377) REMARK 3 ORIGIN FOR THE GROUP (A): 43.5430 -10.2972 -2.0102 REMARK 3 T TENSOR REMARK 3 T11: 0.1881 T22: 0.2691 REMARK 3 T33: 0.2288 T12: -0.0048 REMARK 3 T13: 0.0528 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 4.7934 L22: 4.1173 REMARK 3 L33: 1.2633 L12: 1.9887 REMARK 3 L13: -0.4270 L23: -0.3999 REMARK 3 S TENSOR REMARK 3 S11: 0.1293 S12: 0.0297 S13: 0.2792 REMARK 3 S21: -0.1616 S22: 0.1401 S23: 0.2398 REMARK 3 S31: -0.0880 S32: -0.6416 S33: -0.1096 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'A' and (resseq 378:410) REMARK 3 ORIGIN FOR THE GROUP (A): 41.9633 -7.4101 11.4633 REMARK 3 T TENSOR REMARK 3 T11: 0.3864 T22: 0.2794 REMARK 3 T33: 0.3424 T12: 0.0140 REMARK 3 T13: 0.1482 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 4.7773 L22: 3.0003 REMARK 3 L33: 3.5053 L12: 3.0925 REMARK 3 L13: -4.0035 L23: -2.5763 REMARK 3 S TENSOR REMARK 3 S11: 0.2361 S12: 0.1319 S13: 0.9885 REMARK 3 S21: 0.6610 S22: 0.0911 S23: 0.6112 REMARK 3 S31: 0.0034 S32: -0.3754 S33: -0.3089 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SZ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-11. REMARK 100 THE RCSB ID CODE IS RCSB066828. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : ACCEL/BRUKER DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM), FEATURING REMARK 200 INDIRECTLY CRYO-COOLED FIRST REMARK 200 CRYSTAL AND SAGITTALLY FOCUSING REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27066 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 49.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 12.200 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : 0.11000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.1 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 0.92300 REMARK 200 R SYM FOR SHELL (I) : 0.92300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: REFINEMENT REMARK 200 SOFTWARE USED: PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 600, 0.1 M BIS-TRIS BUFFER, REMARK 280 0.1 M MGSO4, 0.05% DDM, 2 MM NA2SE, PH 5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.59333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.29667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.59333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.29667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.59333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 27.29667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 54.59333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.29667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 419 REMARK 465 GLY A 420 REMARK 465 ILE A 421 REMARK 465 THR A 422 REMARK 465 ARG A 423 REMARK 465 LEU A 424 REMARK 465 LYS A 425 REMARK 465 GLU A 426 REMARK 465 GLU A 427 REMARK 465 ASP A 428 REMARK 465 THR A 429 REMARK 465 HIS A 430 REMARK 465 ARG A 431 REMARK 465 LYS A 432 REMARK 465 ALA A 433 REMARK 465 SER A 434 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 1 58.19 -144.20 REMARK 500 ALA A 9 67.33 -110.38 REMARK 500 ASP A 206 40.06 -102.97 REMARK 500 LEU A 340 9.10 -67.14 REMARK 500 GLU A 341 13.00 -143.07 REMARK 500 PRO A 371 -154.86 -81.88 REMARK 500 GLU A 408 120.27 179.18 REMARK 500 PRO A 409 102.02 -53.62 REMARK 500 PHE A 410 -80.23 -61.21 REMARK 500 TYR A 411 96.55 -67.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 42 24.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6SE A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SE A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SE A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KPG RELATED DB: PDB REMARK 900 RELATED ID: 3KPI RELATED DB: PDB REMARK 900 RELATED ID: 3KPK RELATED DB: PDB REMARK 900 RELATED ID: 3HYV RELATED DB: PDB REMARK 900 RELATED ID: 3HYW RELATED DB: PDB REMARK 900 RELATED ID: 3HYX RELATED DB: PDB REMARK 900 RELATED ID: 3SX6 RELATED DB: PDB REMARK 900 RELATED ID: 3SXI RELATED DB: PDB REMARK 900 RELATED ID: 3SY4 RELATED DB: PDB REMARK 900 RELATED ID: 3SYI RELATED DB: PDB REMARK 900 RELATED ID: 3SZC RELATED DB: PDB REMARK 900 RELATED ID: 3SZF RELATED DB: PDB REMARK 900 RELATED ID: 3SZW RELATED DB: PDB REMARK 900 RELATED ID: 3T0K RELATED DB: PDB REMARK 900 RELATED ID: 3T14 RELATED DB: PDB REMARK 900 RELATED ID: 3T2K RELATED DB: PDB REMARK 900 RELATED ID: 3T2Y RELATED DB: PDB REMARK 900 RELATED ID: 3T2Z RELATED DB: PDB REMARK 900 RELATED ID: 3T31 RELATED DB: PDB DBREF 3SZ0 A 2 434 UNP B7JBP8 B7JBP8_ACIF2 2 434 SEQADV 3SZ0 MET A -2 UNP B7JBP8 EXPRESSION TAG SEQADV 3SZ0 ARG A -1 UNP B7JBP8 EXPRESSION TAG SEQADV 3SZ0 GLY A 0 UNP B7JBP8 EXPRESSION TAG SEQADV 3SZ0 SER A 1 UNP B7JBP8 EXPRESSION TAG SEQRES 1 A 437 MET ARG GLY SER ALA HIS VAL VAL ILE LEU GLY ALA GLY SEQRES 2 A 437 THR GLY GLY MET PRO ALA ALA TYR GLU MET LYS GLU ALA SEQRES 3 A 437 LEU GLY SER GLY HIS GLU VAL THR LEU ILE SER ALA ASN SEQRES 4 A 437 ASP TYR PHE GLN PHE VAL PRO SER ASN PRO TRP VAL GLY SEQRES 5 A 437 VAL GLY TRP LYS GLU ARG ASP ASP ILE ALA PHE PRO ILE SEQRES 6 A 437 ARG HIS TYR VAL GLU ARG LYS GLY ILE HIS PHE ILE ALA SEQRES 7 A 437 GLN SER ALA GLU GLN ILE ASP ALA GLU ALA GLN ASN ILE SEQRES 8 A 437 THR LEU ALA ASP GLY ASN THR VAL HIS TYR ASP TYR LEU SEQRES 9 A 437 MET ILE ALA THR GLY PRO LYS LEU ALA PHE GLU ASN VAL SEQRES 10 A 437 PRO GLY SER ASP PRO HIS GLU GLY PRO VAL GLN SER ILE SEQRES 11 A 437 CYS THR VAL ASP HIS ALA GLU ARG ALA PHE ALA GLU TYR SEQRES 12 A 437 GLN ALA LEU LEU ARG GLU PRO GLY PRO ILE VAL ILE GLY SEQRES 13 A 437 ALA MET ALA GLY ALA SER CYS PHE GLY PRO ALA TYR GLU SEQRES 14 A 437 TYR ALA MET ILE VAL ALA SER ASP LEU LYS LYS ARG GLY SEQRES 15 A 437 MET ARG ASP LYS ILE PRO SER PHE THR PHE ILE THR SER SEQRES 16 A 437 GLU PRO TYR ILE GLY HIS LEU GLY ILE GLN GLY VAL GLY SEQRES 17 A 437 ASP SER LYS GLY ILE LEU THR LYS GLY LEU LYS GLU GLU SEQRES 18 A 437 GLY ILE GLU ALA TYR THR ASN CYS LYS VAL THR LYS VAL SEQRES 19 A 437 GLU ASP ASN LYS MET TYR VAL THR GLN VAL ASP GLU LYS SEQRES 20 A 437 GLY GLU THR ILE LYS GLU MET VAL LEU PRO VAL LYS PHE SEQRES 21 A 437 GLY MET MET ILE PRO ALA PHE LYS GLY VAL PRO ALA VAL SEQRES 22 A 437 ALA GLY VAL GLU GLY LEU CYS ASN PRO GLY GLY PHE VAL SEQRES 23 A 437 LEU VAL ASP GLU HIS GLN ARG SER LYS LYS TYR ALA ASN SEQRES 24 A 437 ILE PHE ALA ALA GLY ILE ALA ILE ALA ILE PRO PRO VAL SEQRES 25 A 437 GLU THR THR PRO VAL PRO THR GLY ALA PRO LYS THR GLY SEQRES 26 A 437 TYR MET ILE GLU SER MET VAL SER ALA ALA VAL HIS ASN SEQRES 27 A 437 ILE LYS ALA ASP LEU GLU GLY ARG LYS GLY GLU GLN THR SEQRES 28 A 437 MET GLY THR TRP ASN ALA VAL CYS PHE ALA ASP MET GLY SEQRES 29 A 437 ASP ARG GLY ALA ALA PHE ILE ALA LEU PRO GLN LEU LYS SEQRES 30 A 437 PRO ARG LYS VAL ASP VAL PHE ALA TYR GLY ARG TRP VAL SEQRES 31 A 437 HIS LEU ALA LYS VAL ALA PHE GLU LYS TYR PHE ILE ARG SEQRES 32 A 437 LYS MET LYS MET GLY VAL SER GLU PRO PHE TYR GLU LYS SEQRES 33 A 437 VAL LEU PHE LYS MET MET GLY ILE THR ARG LEU LYS GLU SEQRES 34 A 437 GLU ASP THR HIS ARG LYS ALA SER HET FAD A 500 53 HET LMT A 501 35 HET SO4 A 502 5 HET 6SE A 503 3 HET SE A 504 1 HET SE A 505 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETNAM SO4 SULFATE ION HETNAM 6SE TRISELANE HETNAM SE SELENIUM ATOM FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 LMT C24 H46 O11 FORMUL 4 SO4 O4 S 2- FORMUL 5 6SE H2 SE3 FORMUL 6 SE 2(SE) FORMUL 8 HOH *225(H2 O) HELIX 1 1 GLY A 12 GLY A 25 1 14 HELIX 2 2 SER A 44 VAL A 50 1 7 HELIX 3 3 GLU A 54 ILE A 58 1 5 HELIX 4 4 ILE A 62 ARG A 68 1 7 HELIX 5 5 PHE A 111 VAL A 114 5 4 HELIX 6 6 THR A 129 GLU A 146 1 18 HELIX 7 7 PHE A 161 ARG A 178 1 18 HELIX 8 8 MET A 180 ILE A 184 5 5 HELIX 9 9 ASP A 206 GLU A 218 1 13 HELIX 10 10 VAL A 267 GLY A 272 1 6 HELIX 11 11 GLY A 301 ILE A 304 5 4 HELIX 12 12 THR A 321 LEU A 340 1 20 HELIX 13 13 ARG A 385 GLY A 405 1 21 HELIX 14 14 GLU A 412 LYS A 417 5 6 SHEET 1 A 5 HIS A 72 ILE A 74 0 SHEET 2 A 5 GLU A 29 ILE A 33 1 N LEU A 32 O HIS A 72 SHEET 3 A 5 HIS A 3 LEU A 7 1 N ILE A 6 O THR A 31 SHEET 4 A 5 TYR A 100 ILE A 103 1 O MET A 102 N VAL A 5 SHEET 5 A 5 ILE A 297 ALA A 299 1 O PHE A 298 N LEU A 101 SHEET 1 B 2 TYR A 38 GLN A 40 0 SHEET 2 B 2 ALA A 59 PRO A 61 -1 O PHE A 60 N PHE A 39 SHEET 1 C 3 ALA A 78 ASP A 82 0 SHEET 2 C 3 ASN A 87 LEU A 90 -1 O THR A 89 N GLU A 79 SHEET 3 C 3 THR A 95 HIS A 97 -1 O VAL A 96 N ILE A 88 SHEET 1 D 2 PRO A 107 LEU A 109 0 SHEET 2 D 2 PHE A 264 GLY A 266 -1 O LYS A 265 N LYS A 108 SHEET 1 E 5 VAL A 124 GLN A 125 0 SHEET 2 E 5 PHE A 257 ILE A 261 1 O GLY A 258 N GLN A 125 SHEET 3 E 5 ILE A 150 ALA A 154 1 N GLY A 153 O ILE A 261 SHEET 4 E 5 PHE A 187 THR A 191 1 O THR A 188 N ILE A 150 SHEET 5 E 5 GLU A 221 TYR A 223 1 O GLU A 221 N PHE A 189 SHEET 1 F 3 CYS A 226 GLU A 232 0 SHEET 2 F 3 LYS A 235 VAL A 241 -1 O TYR A 237 N LYS A 230 SHEET 3 F 3 THR A 247 PRO A 254 -1 O LEU A 253 N MET A 236 SHEET 1 G 3 ALA A 354 ASP A 359 0 SHEET 2 G 3 GLY A 364 LEU A 370 -1 O ALA A 365 N ALA A 358 SHEET 3 G 3 VAL A 378 GLY A 384 -1 O VAL A 380 N ILE A 368 LINK SG ACYS A 356 SE A SE A 504 1555 1555 2.16 LINK SG BCYS A 356 SE3 B6SE A 503 1555 1555 2.29 LINK SG CYS A 160 SE1 B6SE A 503 1555 1555 2.26 CISPEP 1 LEU A 370 PRO A 371 0 -2.84 CISPEP 2 LYS A 374 PRO A 375 0 1.86 CISPEP 3 SER A 407 GLU A 408 0 -8.60 SITE 1 AC1 42 LEU A 7 GLY A 8 ALA A 9 GLY A 10 SITE 2 AC1 42 THR A 11 GLY A 12 SER A 34 ALA A 35 SITE 3 AC1 42 VAL A 42 PRO A 43 SER A 77 ALA A 78 SITE 4 AC1 42 ALA A 104 THR A 105 GLY A 106 PRO A 107 SITE 5 AC1 42 ILE A 127 CYS A 128 CYS A 160 PRO A 163 SITE 6 AC1 42 VAL A 267 GLY A 301 ILE A 302 THR A 321 SITE 7 AC1 42 GLY A 322 ILE A 325 VAL A 355 PHE A 357 SITE 8 AC1 42 LYS A 391 6SE A 503 SE A 504 HOH A 620 SITE 9 AC1 42 HOH A 621 HOH A 639 HOH A 643 HOH A 652 SITE 10 AC1 42 HOH A 654 HOH A 668 HOH A 677 HOH A 713 SITE 11 AC1 42 HOH A 726 HOH A 824 SITE 1 AC2 14 MET A 169 GLY A 205 ASP A 206 LEU A 211 SITE 2 AC2 14 GLU A 217 CYS A 356 ALA A 358 MET A 360 SITE 3 AC2 14 ALA A 365 PHE A 367 TYR A 383 HOH A 648 SITE 4 AC2 14 HOH A 672 HOH A 796 SITE 1 AC3 4 MET A -2 HIS A 3 HIS A 97 HOH A 719 SITE 1 AC4 3 CYS A 160 CYS A 356 FAD A 500 SITE 1 AC5 4 THR A 321 VAL A 355 CYS A 356 FAD A 500 SITE 1 AC6 3 GLY A 162 CYS A 356 HOH A 817 CRYST1 149.900 149.900 81.890 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006671 0.003852 0.000000 0.00000 SCALE2 0.000000 0.007703 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012212 0.00000