HEADER OXIDOREDUCTASE 18-JUL-11 3SZF TITLE CRYSTAL STRUCTURE OF SULFIDE:QUINONE OXIDOREDUCTASE H198A VARIANT FROM TITLE 2 ACIDITHIOBACILLUS FERROOXIDANS IN COMPLEX WITH BOUND TRISULFIDE AND TITLE 3 DECYLUBIQUINONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFIDE-QUINONE REDUCTASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SULFIDE:QUINONE OXIDOREDUCTASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACIDITHIOBACILLUS FERROOXIDANS; SOURCE 3 ORGANISM_TAXID: 243159; SOURCE 4 STRAIN: ATCC 23270 / DSM 14882 / NCIB 8455; SOURCE 5 GENE: AFE_1792; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SULFIDE:QUINONE OXIDOREDUCTASE, HIS198ALA VARIANT, INTEGRAL MONOTOPIC KEYWDS 2 MEMBRANE PROTEIN, COMPLEX WITH TETRASULFIDE AND UBIQUINONE, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.M.CHERNEY,Y.ZHANG,M.N.G.JAMES,J.H.WEINER REVDAT 3 07-MAY-14 3SZF 1 REMARK REVDAT 2 13-JUN-12 3SZF 1 JRNL REVDAT 1 16-MAY-12 3SZF 0 JRNL AUTH M.M.CHERNEY,Y.ZHANG,M.N.JAMES,J.H.WEINER JRNL TITL STRUCTURE-ACTIVITY CHARACTERIZATION OF SULFIDE:QUINONE JRNL TITL 2 OXIDOREDUCTASE VARIANTS. JRNL REF J.STRUCT.BIOL. V. 178 319 2012 JRNL REFN ISSN 1047-8477 JRNL PMID 22542586 JRNL DOI 10.1016/J.JSB.2012.04.007 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 30818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3781 - 4.6672 1.00 3016 146 0.1697 0.2001 REMARK 3 2 4.6672 - 3.7051 1.00 2835 150 0.1380 0.1648 REMARK 3 3 3.7051 - 3.2369 1.00 2821 140 0.1775 0.2335 REMARK 3 4 3.2369 - 2.9411 1.00 2772 143 0.1811 0.2469 REMARK 3 5 2.9411 - 2.7303 1.00 2739 174 0.1964 0.2807 REMARK 3 6 2.7303 - 2.5693 1.00 2768 152 0.1968 0.2625 REMARK 3 7 2.5693 - 2.4407 1.00 2735 144 0.1867 0.2564 REMARK 3 8 2.4407 - 2.3344 1.00 2741 154 0.1886 0.2584 REMARK 3 9 2.3344 - 2.2446 0.94 2585 122 0.2471 0.3082 REMARK 3 10 2.2446 - 2.1671 0.83 2269 125 0.2540 0.3474 REMARK 3 11 2.1671 - 2.0994 0.73 1972 115 0.2397 0.3034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 39.19 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.660 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.86860 REMARK 3 B22 (A**2) : -0.86860 REMARK 3 B33 (A**2) : 1.73730 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3427 REMARK 3 ANGLE : 1.197 4644 REMARK 3 CHIRALITY : 0.072 493 REMARK 3 PLANARITY : 0.008 584 REMARK 3 DIHEDRAL : 16.373 1284 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resseq 1:161) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8399 -26.7549 12.2344 REMARK 3 T TENSOR REMARK 3 T11: 0.1559 T22: 0.2423 REMARK 3 T33: 0.1330 T12: -0.0564 REMARK 3 T13: 0.0321 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.6042 L22: 1.1142 REMARK 3 L33: 0.6025 L12: 0.4024 REMARK 3 L13: 0.0242 L23: -0.1392 REMARK 3 S TENSOR REMARK 3 S11: 0.0052 S12: -0.1835 S13: -0.0664 REMARK 3 S21: 0.1734 S22: -0.0272 S23: 0.0436 REMARK 3 S31: 0.0715 S32: -0.2194 S33: 0.0152 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resseq 162:232) REMARK 3 ORIGIN FOR THE GROUP (A): 64.6691 -17.1132 6.3653 REMARK 3 T TENSOR REMARK 3 T11: 0.1311 T22: 0.1754 REMARK 3 T33: 0.3185 T12: -0.0552 REMARK 3 T13: -0.0203 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 1.2204 L22: 1.2288 REMARK 3 L33: 1.1624 L12: -0.5081 REMARK 3 L13: 0.1650 L23: -0.2043 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.1849 S13: 0.0286 REMARK 3 S21: 0.1220 S22: -0.0536 S23: -0.4664 REMARK 3 S31: -0.0981 S32: 0.1112 S33: 0.0407 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resseq 233:341) REMARK 3 ORIGIN FOR THE GROUP (A): 45.8890 -25.7558 -2.5717 REMARK 3 T TENSOR REMARK 3 T11: 0.1473 T22: 0.2318 REMARK 3 T33: 0.1083 T12: -0.0537 REMARK 3 T13: 0.0194 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.2570 L22: 1.1025 REMARK 3 L33: 0.5737 L12: 0.0642 REMARK 3 L13: 0.1921 L23: -0.2017 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: 0.2693 S13: 0.0186 REMARK 3 S21: -0.1206 S22: 0.0131 S23: -0.0506 REMARK 3 S31: 0.1519 S32: -0.1343 S33: -0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resseq 342:377) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7116 -10.3589 -1.8784 REMARK 3 T TENSOR REMARK 3 T11: 0.1950 T22: 0.2520 REMARK 3 T33: 0.1680 T12: -0.0362 REMARK 3 T13: 0.0173 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 1.8740 L22: 2.0207 REMARK 3 L33: 0.9647 L12: 0.3744 REMARK 3 L13: -0.2654 L23: -0.1754 REMARK 3 S TENSOR REMARK 3 S11: 0.0066 S12: -0.0125 S13: -0.0196 REMARK 3 S21: -0.1756 S22: 0.1213 S23: 0.0588 REMARK 3 S31: -0.0165 S32: -0.4070 S33: -0.0724 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'A' and (resseq 378:410) REMARK 3 ORIGIN FOR THE GROUP (A): 42.3051 -7.2395 11.7580 REMARK 3 T TENSOR REMARK 3 T11: 0.1526 T22: 0.2170 REMARK 3 T33: 0.1823 T12: 0.0204 REMARK 3 T13: 0.0397 T23: -0.0324 REMARK 3 L TENSOR REMARK 3 L11: 2.0398 L22: 1.7970 REMARK 3 L33: 2.3048 L12: 1.7079 REMARK 3 L13: -2.1228 L23: -1.8576 REMARK 3 S TENSOR REMARK 3 S11: 0.0339 S12: 0.0385 S13: 0.3121 REMARK 3 S21: 0.1967 S22: 0.0536 S23: 0.3624 REMARK 3 S31: 0.0314 S32: -0.3334 S33: -0.0273 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-11. REMARK 100 THE RCSB ID CODE IS RCSB066843. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : ACCEL/BRUKER DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30889 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.099 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : 0.08600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.64200 REMARK 200 R SYM FOR SHELL (I) : 0.64200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: REFINEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 600, 0.1 M BIS-TRIS BUFFER,0.1 REMARK 280 M MGSO4, 0.05% DDM, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.59400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.29700 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.59400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.29700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.59400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 27.29700 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 54.59400 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.29700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 419 REMARK 465 GLY A 420 REMARK 465 ILE A 421 REMARK 465 THR A 422 REMARK 465 ARG A 423 REMARK 465 LEU A 424 REMARK 465 LYS A 425 REMARK 465 GLU A 426 REMARK 465 GLU A 427 REMARK 465 ASP A 428 REMARK 465 THR A 429 REMARK 465 HIS A 430 REMARK 465 ARG A 431 REMARK 465 LYS A 432 REMARK 465 ALA A 433 REMARK 465 SER A 434 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 9 61.73 -108.88 REMARK 500 ASP A 206 40.69 -93.28 REMARK 500 PRO A 371 -155.84 -76.47 REMARK 500 ASP A 379 85.79 -150.04 REMARK 500 GLU A 408 123.37 173.26 REMARK 500 PRO A 409 81.11 -58.83 REMARK 500 PHE A 416 -2.82 -57.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCQ A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H2S A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S3H A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H2S A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H2S A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 508 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KPG RELATED DB: PDB REMARK 900 RELATED ID: 3KPI RELATED DB: PDB REMARK 900 RELATED ID: 3KPK RELATED DB: PDB REMARK 900 RELATED ID: 3HYV RELATED DB: PDB REMARK 900 RELATED ID: 3HYW RELATED DB: PDB REMARK 900 RELATED ID: 3HYX RELATED DB: PDB REMARK 900 RELATED ID: 3SX6 RELATED DB: PDB REMARK 900 RELATED ID: 3SXI RELATED DB: PDB REMARK 900 RELATED ID: 3SY4 RELATED DB: PDB REMARK 900 RELATED ID: 3SYI RELATED DB: PDB REMARK 900 RELATED ID: 3SZ0 RELATED DB: PDB REMARK 900 RELATED ID: 3SZC RELATED DB: PDB REMARK 900 RELATED ID: 3SZW RELATED DB: PDB REMARK 900 RELATED ID: 3T0K RELATED DB: PDB REMARK 900 RELATED ID: 3T14 RELATED DB: PDB REMARK 900 RELATED ID: 3T2K RELATED DB: PDB REMARK 900 RELATED ID: 3T2Y RELATED DB: PDB REMARK 900 RELATED ID: 3T2Z RELATED DB: PDB REMARK 900 RELATED ID: 3T31 RELATED DB: PDB DBREF 3SZF A 2 434 UNP B7JBP8 B7JBP8_ACIF2 2 434 SEQADV 3SZF MET A -2 UNP B7JBP8 EXPRESSION TAG SEQADV 3SZF ARG A -1 UNP B7JBP8 EXPRESSION TAG SEQADV 3SZF GLY A 0 UNP B7JBP8 EXPRESSION TAG SEQADV 3SZF SER A 1 UNP B7JBP8 EXPRESSION TAG SEQADV 3SZF ALA A 198 UNP B7JBP8 HIS 198 ENGINEERED MUTATION SEQRES 1 A 437 MET ARG GLY SER ALA HIS VAL VAL ILE LEU GLY ALA GLY SEQRES 2 A 437 THR GLY GLY MET PRO ALA ALA TYR GLU MET LYS GLU ALA SEQRES 3 A 437 LEU GLY SER GLY HIS GLU VAL THR LEU ILE SER ALA ASN SEQRES 4 A 437 ASP TYR PHE GLN PHE VAL PRO SER ASN PRO TRP VAL GLY SEQRES 5 A 437 VAL GLY TRP LYS GLU ARG ASP ASP ILE ALA PHE PRO ILE SEQRES 6 A 437 ARG HIS TYR VAL GLU ARG LYS GLY ILE HIS PHE ILE ALA SEQRES 7 A 437 GLN SER ALA GLU GLN ILE ASP ALA GLU ALA GLN ASN ILE SEQRES 8 A 437 THR LEU ALA ASP GLY ASN THR VAL HIS TYR ASP TYR LEU SEQRES 9 A 437 MET ILE ALA THR GLY PRO LYS LEU ALA PHE GLU ASN VAL SEQRES 10 A 437 PRO GLY SER ASP PRO HIS GLU GLY PRO VAL GLN SER ILE SEQRES 11 A 437 CYS THR VAL ASP HIS ALA GLU ARG ALA PHE ALA GLU TYR SEQRES 12 A 437 GLN ALA LEU LEU ARG GLU PRO GLY PRO ILE VAL ILE GLY SEQRES 13 A 437 ALA MET ALA GLY ALA SER CYS PHE GLY PRO ALA TYR GLU SEQRES 14 A 437 TYR ALA MET ILE VAL ALA SER ASP LEU LYS LYS ARG GLY SEQRES 15 A 437 MET ARG ASP LYS ILE PRO SER PHE THR PHE ILE THR SER SEQRES 16 A 437 GLU PRO TYR ILE GLY ALA LEU GLY ILE GLN GLY VAL GLY SEQRES 17 A 437 ASP SER LYS GLY ILE LEU THR LYS GLY LEU LYS GLU GLU SEQRES 18 A 437 GLY ILE GLU ALA TYR THR ASN CYS LYS VAL THR LYS VAL SEQRES 19 A 437 GLU ASP ASN LYS MET TYR VAL THR GLN VAL ASP GLU LYS SEQRES 20 A 437 GLY GLU THR ILE LYS GLU MET VAL LEU PRO VAL LYS PHE SEQRES 21 A 437 GLY MET MET ILE PRO ALA PHE LYS GLY VAL PRO ALA VAL SEQRES 22 A 437 ALA GLY VAL GLU GLY LEU CYS ASN PRO GLY GLY PHE VAL SEQRES 23 A 437 LEU VAL ASP GLU HIS GLN ARG SER LYS LYS TYR ALA ASN SEQRES 24 A 437 ILE PHE ALA ALA GLY ILE ALA ILE ALA ILE PRO PRO VAL SEQRES 25 A 437 GLU THR THR PRO VAL PRO THR GLY ALA PRO LYS THR GLY SEQRES 26 A 437 TYR MET ILE GLU SER MET VAL SER ALA ALA VAL HIS ASN SEQRES 27 A 437 ILE LYS ALA ASP LEU GLU GLY ARG LYS GLY GLU GLN THR SEQRES 28 A 437 MET GLY THR TRP ASN ALA VAL CYS PHE ALA ASP MET GLY SEQRES 29 A 437 ASP ARG GLY ALA ALA PHE ILE ALA LEU PRO GLN LEU LYS SEQRES 30 A 437 PRO ARG LYS VAL ASP VAL PHE ALA TYR GLY ARG TRP VAL SEQRES 31 A 437 HIS LEU ALA LYS VAL ALA PHE GLU LYS TYR PHE ILE ARG SEQRES 32 A 437 LYS MET LYS MET GLY VAL SER GLU PRO PHE TYR GLU LYS SEQRES 33 A 437 VAL LEU PHE LYS MET MET GLY ILE THR ARG LEU LYS GLU SEQRES 34 A 437 GLU ASP THR HIS ARG LYS ALA SER HET FAD A 500 53 HET LMT A 501 35 HET DCQ A 502 23 HET H2S A 503 1 HET S3H A 504 3 HET H2S A 505 1 HET H2S A 506 1 HET H2S A 507 1 HET SO4 A 508 5 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETNAM DCQ 2-DECYL-5,6-DIMETHOXY-3-METHYLCYCLOHEXA-2,5-DIENE-1,4- HETNAM 2 DCQ DIONE HETNAM H2S HYDROSULFURIC ACID HETNAM S3H TRISULFANE HETNAM SO4 SULFATE ION HETSYN DCQ DECYLUBIQUINONE HETSYN H2S HYDROGEN SULFIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 LMT C24 H46 O11 FORMUL 4 DCQ C19 H30 O4 FORMUL 5 H2S 4(H2 S) FORMUL 6 S3H H2 S3 FORMUL 10 SO4 O4 S 2- FORMUL 11 HOH *279(H2 O) HELIX 1 1 GLY A 12 GLY A 25 1 14 HELIX 2 2 SER A 44 VAL A 50 1 7 HELIX 3 3 GLU A 54 ILE A 58 1 5 HELIX 4 4 ILE A 62 ARG A 68 1 7 HELIX 5 5 PHE A 111 VAL A 114 5 4 HELIX 6 6 THR A 129 GLU A 146 1 18 HELIX 7 7 PHE A 161 ARG A 178 1 18 HELIX 8 8 MET A 180 ILE A 184 5 5 HELIX 9 9 ASP A 206 GLU A 218 1 13 HELIX 10 10 VAL A 267 GLY A 272 1 6 HELIX 11 11 GLY A 301 ILE A 304 5 4 HELIX 12 12 THR A 321 GLU A 341 1 21 HELIX 13 13 ARG A 385 GLY A 405 1 21 SHEET 1 A 5 HIS A 72 ILE A 74 0 SHEET 2 A 5 GLU A 29 ILE A 33 1 N LEU A 32 O HIS A 72 SHEET 3 A 5 HIS A 3 LEU A 7 1 N ILE A 6 O THR A 31 SHEET 4 A 5 TYR A 100 ILE A 103 1 O MET A 102 N VAL A 5 SHEET 5 A 5 ILE A 297 ALA A 299 1 O PHE A 298 N ILE A 103 SHEET 1 B 2 TYR A 38 GLN A 40 0 SHEET 2 B 2 ALA A 59 PRO A 61 -1 O PHE A 60 N PHE A 39 SHEET 1 C 3 ALA A 78 ASP A 82 0 SHEET 2 C 3 ASN A 87 LEU A 90 -1 O THR A 89 N GLU A 79 SHEET 3 C 3 THR A 95 HIS A 97 -1 O VAL A 96 N ILE A 88 SHEET 1 D 2 PRO A 107 LEU A 109 0 SHEET 2 D 2 PHE A 264 GLY A 266 -1 O LYS A 265 N LYS A 108 SHEET 1 E 5 VAL A 124 GLN A 125 0 SHEET 2 E 5 PHE A 257 ILE A 261 1 O GLY A 258 N GLN A 125 SHEET 3 E 5 ILE A 150 ALA A 154 1 N GLY A 153 O ILE A 261 SHEET 4 E 5 PHE A 187 THR A 191 1 O THR A 188 N ILE A 150 SHEET 5 E 5 GLU A 221 TYR A 223 1 O GLU A 221 N PHE A 189 SHEET 1 F 3 CYS A 226 GLU A 232 0 SHEET 2 F 3 LYS A 235 VAL A 241 -1 O THR A 239 N LYS A 227 SHEET 3 F 3 THR A 247 PRO A 254 -1 O LEU A 253 N MET A 236 SHEET 1 G 3 ALA A 354 ASP A 359 0 SHEET 2 G 3 GLY A 364 LEU A 370 -1 O ALA A 365 N ALA A 358 SHEET 3 G 3 VAL A 378 GLY A 384 -1 O ALA A 382 N ALA A 366 LINK SG ACYS A 160 S AH2S A 506 1555 1555 2.04 LINK SG ACYS A 356 S AH2S A 503 1555 1555 2.05 LINK SG BCYS A 160 S1 BS3H A 504 1555 1555 2.05 LINK SG BCYS A 356 S3 BS3H A 504 1555 1555 2.07 CISPEP 1 LEU A 370 PRO A 371 0 -5.76 CISPEP 2 LYS A 374 PRO A 375 0 -0.21 CISPEP 3 SER A 407 GLU A 408 0 -10.55 SITE 1 AC1 42 LEU A 7 GLY A 8 ALA A 9 GLY A 10 SITE 2 AC1 42 THR A 11 GLY A 12 SER A 34 ALA A 35 SITE 3 AC1 42 VAL A 42 SER A 77 ALA A 78 ALA A 104 SITE 4 AC1 42 THR A 105 GLY A 106 PRO A 107 ILE A 127 SITE 5 AC1 42 CYS A 160 PRO A 163 VAL A 267 GLY A 301 SITE 6 AC1 42 ILE A 302 LYS A 320 THR A 321 GLY A 322 SITE 7 AC1 42 ILE A 325 VAL A 355 PHE A 357 DCQ A 502 SITE 8 AC1 42 H2S A 503 S3H A 504 H2S A 506 HOH A 622 SITE 9 AC1 42 HOH A 623 HOH A 644 HOH A 648 HOH A 657 SITE 10 AC1 42 HOH A 659 HOH A 673 HOH A 682 HOH A 724 SITE 11 AC1 42 HOH A 727 HOH A 740 SITE 1 AC2 17 ASP A 206 ILE A 210 LEU A 211 CYS A 356 SITE 2 AC2 17 PHE A 357 ALA A 358 ALA A 365 PHE A 367 SITE 3 AC2 17 TYR A 383 HOH A 653 HOH A 661 HOH A 677 SITE 4 AC2 17 HOH A 717 HOH A 723 HOH A 788 HOH A 828 SITE 5 AC2 17 HOH A 865 SITE 1 AC3 11 PHE A 41 PRO A 43 GLY A 322 TYR A 323 SITE 2 AC3 11 VAL A 355 PHE A 357 PHE A 394 TYR A 411 SITE 3 AC3 11 LYS A 417 FAD A 500 HOH A 761 SITE 1 AC4 4 THR A 321 VAL A 355 CYS A 356 FAD A 500 SITE 1 AC5 5 CYS A 160 PRO A 319 CYS A 356 FAD A 500 SITE 2 AC5 5 H2S A 505 SITE 1 AC6 4 GLY A 162 CYS A 356 S3H A 504 HOH A 877 SITE 1 AC7 3 CYS A 160 FAD A 500 HOH A 701 SITE 1 AC8 4 MET A -2 HIS A 3 HIS A 97 HOH A 734 CRYST1 150.234 150.234 81.891 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006656 0.003843 0.000000 0.00000 SCALE2 0.000000 0.007686 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012211 0.00000