HEADER TRANSCRIPTION 19-JUL-11 3SZP TITLE FULL-LENGTH STRUCTURE OF THE VIBRIO CHOLERAE VIRULENCE ACTIVATOR, TITLE 2 APHB, A MEMBER OF THE LTTR PROTEIN FAMILY COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, LYSR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APHB, LYSR-TYPE TRANSCRIPTIONAL REGULATOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: VC_1049; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTXB1 KEYWDS WINGED HELIX-TURN HELIX, DNA-BINDING, TRANSCRIPTION FACTOR, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.L.TAYLOR,R.S.DE SILVA,G.KOVACIKOVA,W.LIN,R.K.TAYLOR,K.SKORUPSKI, AUTHOR 2 F.J.KULL REVDAT 4 03-APR-24 3SZP 1 REMARK REVDAT 3 28-FEB-24 3SZP 1 REMARK REVDAT 2 01-FEB-12 3SZP 1 JRNL REVDAT 1 23-NOV-11 3SZP 0 JRNL AUTH J.L.TAYLOR,R.S.DE SILVA,G.KOVACIKOVA,W.LIN,R.K.TAYLOR, JRNL AUTH 2 K.SKORUPSKI,F.J.KULL JRNL TITL THE CRYSTAL STRUCTURE OF APHB, A VIRULENCE GENE ACTIVATOR JRNL TITL 2 FROM VIBRIO CHOLERAE, REVEALS RESIDUES THAT INFLUENCE ITS JRNL TITL 3 RESPONSE TO OXYGEN AND PH. JRNL REF MOL.MICROBIOL. V. 83 457 2012 JRNL REFN ISSN 0950-382X JRNL PMID 22053934 JRNL DOI 10.1111/J.1365-2958.2011.07919.X REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 45542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2277 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8625 - 4.7427 1.00 4527 238 0.2025 0.2098 REMARK 3 2 4.7427 - 3.7648 1.00 4378 230 0.1686 0.2082 REMARK 3 3 3.7648 - 3.2890 1.00 4345 229 0.1867 0.2111 REMARK 3 4 3.2890 - 2.9884 1.00 4337 228 0.2133 0.2463 REMARK 3 5 2.9884 - 2.7742 1.00 4284 226 0.2315 0.2493 REMARK 3 6 2.7742 - 2.6106 1.00 4292 226 0.2365 0.2563 REMARK 3 7 2.6106 - 2.4799 1.00 4305 226 0.2431 0.2849 REMARK 3 8 2.4799 - 2.3720 1.00 4272 225 0.2508 0.2788 REMARK 3 9 2.3720 - 2.2806 1.00 4274 225 0.2516 0.2870 REMARK 3 10 2.2806 - 2.2019 0.99 4251 224 0.2640 0.3055 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 46.92 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.600 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.16450 REMARK 3 B22 (A**2) : -3.43110 REMARK 3 B33 (A**2) : 6.59560 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4718 REMARK 3 ANGLE : 1.112 6377 REMARK 3 CHIRALITY : 0.073 718 REMARK 3 PLANARITY : 0.004 824 REMARK 3 DIHEDRAL : 14.424 1807 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:68) REMARK 3 ORIGIN FOR THE GROUP (A): 45.9387 -35.2184 -26.4331 REMARK 3 T TENSOR REMARK 3 T11: 0.2089 T22: 0.2204 REMARK 3 T33: 0.3206 T12: 0.0415 REMARK 3 T13: -0.0256 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 5.7103 L22: 0.7515 REMARK 3 L33: 3.7696 L12: 1.6326 REMARK 3 L13: -1.0941 L23: -0.1788 REMARK 3 S TENSOR REMARK 3 S11: -0.0718 S12: -0.1890 S13: -0.3255 REMARK 3 S21: 0.0567 S22: -0.0464 S23: 0.0045 REMARK 3 S31: 0.2129 S32: 0.0555 S33: 0.1312 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 69:90) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8116 -20.1333 -16.5948 REMARK 3 T TENSOR REMARK 3 T11: 0.4594 T22: 0.5170 REMARK 3 T33: 0.9136 T12: 0.0985 REMARK 3 T13: 0.0568 T23: -0.2802 REMARK 3 L TENSOR REMARK 3 L11: 0.0986 L22: 0.1117 REMARK 3 L33: 1.1087 L12: -0.1136 REMARK 3 L13: 0.3272 L23: -0.3624 REMARK 3 S TENSOR REMARK 3 S11: -0.2114 S12: -1.2903 S13: 0.9994 REMARK 3 S21: 0.4262 S22: 0.4812 S23: 0.2115 REMARK 3 S31: -0.2148 S32: 0.0027 S33: -0.1361 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 91:160) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6859 -37.6569 -14.9706 REMARK 3 T TENSOR REMARK 3 T11: 0.1938 T22: 0.2919 REMARK 3 T33: 0.1990 T12: 0.0131 REMARK 3 T13: -0.0167 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 3.7038 L22: 4.1654 REMARK 3 L33: 4.2895 L12: 0.7177 REMARK 3 L13: -0.4442 L23: 0.4610 REMARK 3 S TENSOR REMARK 3 S11: 0.0528 S12: -0.4220 S13: 0.0341 REMARK 3 S21: 0.4594 S22: -0.0557 S23: -0.5259 REMARK 3 S31: -0.0496 S32: 0.4976 S33: -0.0670 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 161:260) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6025 -64.3949 -16.3055 REMARK 3 T TENSOR REMARK 3 T11: 0.1984 T22: 0.3092 REMARK 3 T33: 0.1708 T12: 0.0446 REMARK 3 T13: -0.0239 T23: -0.0626 REMARK 3 L TENSOR REMARK 3 L11: 2.8536 L22: 3.2873 REMARK 3 L33: 3.2600 L12: 1.3080 REMARK 3 L13: -1.3262 L23: -0.4746 REMARK 3 S TENSOR REMARK 3 S11: -0.0399 S12: 0.0228 S13: -0.1348 REMARK 3 S21: 0.0080 S22: -0.1700 S23: 0.1691 REMARK 3 S31: -0.2274 S32: -0.6680 S33: 0.1322 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 261:290) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8440 -32.5233 -9.6887 REMARK 3 T TENSOR REMARK 3 T11: 0.4246 T22: 0.3593 REMARK 3 T33: 0.2786 T12: 0.0416 REMARK 3 T13: -0.0337 T23: -0.0969 REMARK 3 L TENSOR REMARK 3 L11: 3.0121 L22: 4.0087 REMARK 3 L33: 3.8253 L12: -2.7785 REMARK 3 L13: -1.4205 L23: -0.8171 REMARK 3 S TENSOR REMARK 3 S11: 0.1140 S12: -0.3905 S13: 0.4276 REMARK 3 S21: 0.9014 S22: 0.0274 S23: -0.0558 REMARK 3 S31: -0.8626 S32: -0.1001 S33: -0.0836 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 1:59) REMARK 3 ORIGIN FOR THE GROUP (A): 67.1198 -94.0991 -32.7966 REMARK 3 T TENSOR REMARK 3 T11: -0.0330 T22: 0.3784 REMARK 3 T33: 1.9028 T12: 0.3319 REMARK 3 T13: 0.1849 T23: -0.3719 REMARK 3 L TENSOR REMARK 3 L11: 0.8545 L22: 0.3887 REMARK 3 L33: 1.2224 L12: -0.5208 REMARK 3 L13: 0.5445 L23: -0.6051 REMARK 3 S TENSOR REMARK 3 S11: -0.1786 S12: 0.7338 S13: -0.8175 REMARK 3 S21: -0.2230 S22: -0.2835 S23: -0.4416 REMARK 3 S31: 0.6633 S32: 0.4249 S33: -0.6627 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 60:94) REMARK 3 ORIGIN FOR THE GROUP (A): 49.4468 -86.3677 -23.9282 REMARK 3 T TENSOR REMARK 3 T11: 0.3275 T22: 0.1923 REMARK 3 T33: 1.1508 T12: -0.0009 REMARK 3 T13: 0.0224 T23: 0.2428 REMARK 3 L TENSOR REMARK 3 L11: 0.8324 L22: 0.3457 REMARK 3 L33: 1.0772 L12: -0.0193 REMARK 3 L13: -0.0284 L23: 0.4503 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: -0.4617 S13: -0.7963 REMARK 3 S21: 0.4256 S22: -0.1858 S23: -1.0518 REMARK 3 S31: 0.4862 S32: -0.0184 S33: -0.1052 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 95:159) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6746 -58.2370 -31.5654 REMARK 3 T TENSOR REMARK 3 T11: 0.1931 T22: 0.1394 REMARK 3 T33: 0.1677 T12: 0.0172 REMARK 3 T13: -0.0257 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 3.9137 L22: 4.5138 REMARK 3 L33: 3.4489 L12: -0.1262 REMARK 3 L13: -0.9404 L23: 0.0186 REMARK 3 S TENSOR REMARK 3 S11: 0.0755 S12: 0.1399 S13: 0.2720 REMARK 3 S21: -0.0054 S22: -0.0361 S23: -0.3429 REMARK 3 S31: -0.2695 S32: 0.0495 S33: 0.0026 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 160:262) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5982 -35.3916 -38.9343 REMARK 3 T TENSOR REMARK 3 T11: 0.2189 T22: 0.1562 REMARK 3 T33: 0.1747 T12: 0.0021 REMARK 3 T13: 0.0090 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 2.8162 L22: 3.3875 REMARK 3 L33: 5.3046 L12: -0.6928 REMARK 3 L13: -0.6714 L23: -1.8015 REMARK 3 S TENSOR REMARK 3 S11: -0.0521 S12: 0.1953 S13: -0.1176 REMARK 3 S21: -0.4109 S22: -0.0199 S23: 0.0730 REMARK 3 S31: 0.2663 S32: -0.0938 S33: 0.0279 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 263:290) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2518 -65.5795 -37.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.2092 T22: 0.1956 REMARK 3 T33: 0.1556 T12: 0.0252 REMARK 3 T13: 0.0179 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 2.9019 L22: 4.9286 REMARK 3 L33: 2.9844 L12: 2.7149 REMARK 3 L13: -2.0117 L23: -0.0536 REMARK 3 S TENSOR REMARK 3 S11: 0.0218 S12: 0.3890 S13: -0.0167 REMARK 3 S21: -0.6792 S22: -0.0855 S23: -0.1862 REMARK 3 S31: -0.1616 S32: -0.2198 S33: 0.0336 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SZP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066853. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45546 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX AUTOMR REMARK 200 STARTING MODEL: SEMET DERIVATIVE SOLVED BY SAD REMARK 200 REMARK 200 REMARK: R MEASURED = 0.089 (0.416 FOR HIGHEST RESOLUTION SHELL) REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 M SODIUM FORMATE, 0.01 M BETAINE REMARK 280 MONOHYDRATE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.10450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.05000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 83.92300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.10450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.05000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.92300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.10450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.05000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 83.92300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.10450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.05000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.92300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 100.20900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -106.10000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 291 REMARK 465 ARG B 148 REMARK 465 ASP B 149 REMARK 465 GLN B 291 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 81 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 104 CB CG CD NE CZ NH1 NH2 REMARK 480 ASP A 132 CG OD1 OD2 REMARK 480 GLU A 181 CD OE1 OE2 REMARK 480 ASP A 238 CG OD1 OD2 REMARK 480 GLU B 80 CD OE1 OE2 REMARK 480 GLU B 115 CD OE1 OE2 REMARK 480 ASP B 132 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 104 O MET A 240 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 362 O HOH B 377 7544 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 52 -120.26 55.78 REMARK 500 GLN A 129 -70.36 -45.19 REMARK 500 ALA A 130 -126.76 33.43 REMARK 500 ASP A 149 -20.07 84.08 REMARK 500 GLN A 176 135.76 -37.04 REMARK 500 LEU A 194 71.01 -105.08 REMARK 500 PRO B 28 152.01 -48.56 REMARK 500 LEU B 47 -118.77 -148.47 REMARK 500 HIS B 51 -80.22 -88.36 REMARK 500 LEU B 55 -171.04 178.81 REMARK 500 THR B 56 -151.63 59.21 REMARK 500 LEU B 57 166.82 173.31 REMARK 500 PRO B 175 126.29 -37.47 REMARK 500 LEU B 194 62.89 -109.11 REMARK 500 HIS B 270 106.03 -26.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T1B RELATED DB: PDB REMARK 900 FULL-LENGTH APHB N100E VARIANT DBREF 3SZP A 1 291 UNP Q9KT56 Q9KT56_VIBCH 9 299 DBREF 3SZP B 1 291 UNP Q9KT56 Q9KT56_VIBCH 9 299 SEQRES 1 A 291 MET LYS LEU ASP ASP LEU ASN LEU PHE ARG LEU VAL VAL SEQRES 2 A 291 GLU ASN GLY SER TYR THR SER THR SER LYS LYS THR MET SEQRES 3 A 291 ILE PRO VAL ALA THR ILE THR ARG ARG ILE GLN ALA LEU SEQRES 4 A 291 GLU ASP SER LEU ASN LEU ARG LEU LEU ASN ARG HIS ALA SEQRES 5 A 291 ARG LYS LEU THR LEU THR GLU ALA GLY GLU ARG PHE TYR SEQRES 6 A 291 LYS ASP CYS SER PRO LEU LEU GLU ARG LEU ALA SER MET SEQRES 7 A 291 THR GLU GLU ILE THR ASP GLU CYS ARG GLY ALA SER GLY SEQRES 8 A 291 ARG ILE ARG ILE SER ALA PRO SER ASN LEU THR LYS ARG SEQRES 9 A 291 MET MET MET PRO MET PHE ASN ALA PHE MET GLU LYS TYR SEQRES 10 A 291 PRO ASP ILE HIS ILE GLU LEU MET MET SER ASN GLN ALA SEQRES 11 A 291 ASP ASP LEU ASP PRO THR GLU TRP ASP VAL ILE PHE ARG SEQRES 12 A 291 VAL GLY PRO GLN ARG ASP SER SER LEU ILE ALA ARG LYS SEQRES 13 A 291 ILE GLY GLU VAL LYS ASP ILE LEU VAL ALA SER PRO GLN SEQRES 14 A 291 TYR LEU SER SER HIS PRO GLN PRO THR HIS ALA GLU GLU SEQRES 15 A 291 LEU HIS GLN HIS GLN LEU LEU LYS GLY TYR PRO LEU LEU SEQRES 16 A 291 LYS TRP GLN LEU THR ASN SER GLN GLY GLU THR VAL VAL SEQRES 17 A 291 ASN SER ASP ARG GLY ARG PHE GLN ALA SER ALA LEU ASN SEQRES 18 A 291 VAL VAL ARG SER ALA CYS SER GLU GLY LEU GLY ILE THR SEQRES 19 A 291 LEU MET PRO ASP VAL MET LEU ARG GLU PHE LEU GLU ASP SEQRES 20 A 291 GLY SER LEU VAL GLN VAL LEU SER ASP TRP SER SER ASN SEQRES 21 A 291 PRO ARG ASP ILE TYR MET LEU TYR ASN HIS LYS ASP HIS SEQRES 22 A 291 GLN PRO GLU LYS VAL ARG LEU PHE ILE ASP PHE VAL ILE SEQRES 23 A 291 GLY TYR HIS LEU GLN SEQRES 1 B 291 MET LYS LEU ASP ASP LEU ASN LEU PHE ARG LEU VAL VAL SEQRES 2 B 291 GLU ASN GLY SER TYR THR SER THR SER LYS LYS THR MET SEQRES 3 B 291 ILE PRO VAL ALA THR ILE THR ARG ARG ILE GLN ALA LEU SEQRES 4 B 291 GLU ASP SER LEU ASN LEU ARG LEU LEU ASN ARG HIS ALA SEQRES 5 B 291 ARG LYS LEU THR LEU THR GLU ALA GLY GLU ARG PHE TYR SEQRES 6 B 291 LYS ASP CYS SER PRO LEU LEU GLU ARG LEU ALA SER MET SEQRES 7 B 291 THR GLU GLU ILE THR ASP GLU CYS ARG GLY ALA SER GLY SEQRES 8 B 291 ARG ILE ARG ILE SER ALA PRO SER ASN LEU THR LYS ARG SEQRES 9 B 291 MET MET MET PRO MET PHE ASN ALA PHE MET GLU LYS TYR SEQRES 10 B 291 PRO ASP ILE HIS ILE GLU LEU MET MET SER ASN GLN ALA SEQRES 11 B 291 ASP ASP LEU ASP PRO THR GLU TRP ASP VAL ILE PHE ARG SEQRES 12 B 291 VAL GLY PRO GLN ARG ASP SER SER LEU ILE ALA ARG LYS SEQRES 13 B 291 ILE GLY GLU VAL LYS ASP ILE LEU VAL ALA SER PRO GLN SEQRES 14 B 291 TYR LEU SER SER HIS PRO GLN PRO THR HIS ALA GLU GLU SEQRES 15 B 291 LEU HIS GLN HIS GLN LEU LEU LYS GLY TYR PRO LEU LEU SEQRES 16 B 291 LYS TRP GLN LEU THR ASN SER GLN GLY GLU THR VAL VAL SEQRES 17 B 291 ASN SER ASP ARG GLY ARG PHE GLN ALA SER ALA LEU ASN SEQRES 18 B 291 VAL VAL ARG SER ALA CYS SER GLU GLY LEU GLY ILE THR SEQRES 19 B 291 LEU MET PRO ASP VAL MET LEU ARG GLU PHE LEU GLU ASP SEQRES 20 B 291 GLY SER LEU VAL GLN VAL LEU SER ASP TRP SER SER ASN SEQRES 21 B 291 PRO ARG ASP ILE TYR MET LEU TYR ASN HIS LYS ASP HIS SEQRES 22 B 291 GLN PRO GLU LYS VAL ARG LEU PHE ILE ASP PHE VAL ILE SEQRES 23 B 291 GLY TYR HIS LEU GLN FORMUL 3 HOH *349(H2 O) HELIX 1 1 LYS A 2 GLY A 16 1 15 HELIX 2 2 SER A 17 MET A 26 1 10 HELIX 3 3 PRO A 28 ASN A 44 1 17 HELIX 4 4 THR A 58 ASP A 84 1 27 HELIX 5 5 LEU A 101 MET A 106 1 6 HELIX 6 6 MET A 106 TYR A 117 1 12 HELIX 7 7 ASP A 134 TRP A 138 5 5 HELIX 8 8 SER A 167 HIS A 174 1 8 HELIX 9 9 HIS A 179 HIS A 186 5 8 HELIX 10 10 ALA A 219 GLU A 229 1 11 HELIX 11 11 LEU A 241 ASP A 247 1 7 HELIX 12 12 HIS A 270 GLN A 274 5 5 HELIX 13 13 PRO A 275 TYR A 288 1 14 HELIX 14 14 LYS B 2 GLY B 16 1 15 HELIX 15 15 SER B 17 MET B 26 1 10 HELIX 16 16 PRO B 28 ASN B 44 1 17 HELIX 17 17 THR B 58 GLY B 88 1 31 HELIX 18 18 SER B 99 MET B 106 1 8 HELIX 19 19 MET B 106 TYR B 117 1 12 HELIX 20 20 ASP B 134 TRP B 138 5 5 HELIX 21 21 SER B 167 HIS B 174 1 8 HELIX 22 22 HIS B 179 HIS B 186 5 8 HELIX 23 23 ALA B 219 GLU B 229 1 11 HELIX 24 24 LEU B 241 ASP B 247 1 7 HELIX 25 25 HIS B 270 GLN B 274 5 5 HELIX 26 26 PRO B 275 LEU B 290 1 16 SHEET 1 A 2 LEU A 48 HIS A 51 0 SHEET 2 A 2 LYS A 54 LEU A 57 -1 O THR A 56 N ASN A 49 SHEET 1 B10 ILE A 153 VAL A 160 0 SHEET 2 B10 ARG A 262 TYR A 268 -1 O ILE A 264 N ILE A 157 SHEET 3 B10 VAL A 140 VAL A 144 -1 N ARG A 143 O TYR A 265 SHEET 4 B10 GLY A 91 PRO A 98 1 N SER A 96 O PHE A 142 SHEET 5 B10 ILE A 120 SER A 127 1 O HIS A 121 N ILE A 93 SHEET 6 B10 PHE B 215 ALA B 217 1 O GLN B 216 N LEU A 124 SHEET 7 B10 LEU B 188 GLY B 191 1 N LYS B 190 O PHE B 215 SHEET 8 B10 ILE B 233 PRO B 237 1 O ILE B 233 N LEU B 189 SHEET 9 B10 ASP B 162 ALA B 166 -1 N ILE B 163 O MET B 236 SHEET 10 B10 VAL B 251 VAL B 253 -1 O VAL B 251 N ALA B 166 SHEET 1 C10 VAL A 251 GLN A 252 0 SHEET 2 C10 ASP A 162 ALA A 166 -1 N ALA A 166 O VAL A 251 SHEET 3 C10 ILE A 233 PRO A 237 -1 O MET A 236 N ILE A 163 SHEET 4 C10 LEU A 188 GLY A 191 1 N LEU A 189 O ILE A 233 SHEET 5 C10 PHE A 215 ALA A 217 1 O PHE A 215 N LYS A 190 SHEET 6 C10 ILE B 120 SER B 127 1 O LEU B 124 N GLN A 216 SHEET 7 C10 GLY B 91 PRO B 98 1 N ILE B 93 O HIS B 121 SHEET 8 C10 VAL B 140 VAL B 144 1 O PHE B 142 N SER B 96 SHEET 9 C10 ARG B 262 TYR B 268 -1 O LEU B 267 N ILE B 141 SHEET 10 C10 ILE B 153 VAL B 160 -1 N VAL B 160 O ARG B 262 SHEET 1 D 2 TRP A 197 THR A 200 0 SHEET 2 D 2 THR A 206 ASN A 209 -1 O VAL A 207 N LEU A 199 SHEET 1 E 2 ASN B 49 ARG B 50 0 SHEET 2 E 2 LYS B 54 LEU B 55 -1 O LEU B 55 N ASN B 49 SHEET 1 F 3 THR B 206 ASN B 209 0 SHEET 2 F 3 TRP B 197 THR B 200 -1 N LEU B 199 O VAL B 207 SHEET 3 F 3 SER B 258 SER B 259 -1 O SER B 258 N THR B 200 CISPEP 1 TYR A 192 PRO A 193 0 4.33 CISPEP 2 TYR B 192 PRO B 193 0 4.66 CRYST1 100.209 106.100 167.846 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009979 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005958 0.00000