data_3T04 # _entry.id 3T04 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3T04 RCSB RCSB066868 WWPDB D_1000066868 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3T04 _pdbx_database_status.recvd_initial_deposition_date 2011-07-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wojcik, J.B.' 1 ? 'Wyrzucki, A.M.' 2 ? 'Koide, S.' 3 ? # _citation.id primary _citation.title 'Targeting the SH2-Kinase Interface in Bcr-Abl Inhibits Leukemogenesis.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 147 _citation.page_first 306 _citation.page_last 319 _citation.year 2011 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22000011 _citation.pdbx_database_id_DOI 10.1016/j.cell.2011.08.046 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Grebien, F.' 1 primary 'Hantschel, O.' 2 primary 'Wojcik, J.' 3 primary 'Kaupe, I.' 4 primary 'Kovacic, B.' 5 primary 'Wyrzucki, A.M.' 6 primary 'Gish, G.D.' 7 primary 'Cerny-Reiterer, S.' 8 primary 'Koide, A.' 9 primary 'Beug, H.' 10 primary 'Pawson, T.' 11 primary 'Valent, P.' 12 primary 'Koide, S.' 13 primary 'Superti-Furga, G.' 14 # _cell.entry_id 3T04 _cell.length_a 39.336 _cell.length_b 49.396 _cell.length_c 107.354 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3T04 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tyrosine-protein kinase ABL1' 13715.132 1 2.7.10.2 ? 'SH2 DOMAIN (UNP RESIDUES 112-232)' ? 2 polymer man 'MONOBODY 7C12' 11286.290 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 4 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 water nat water 18.015 127 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Abelson murine leukemia viral oncogene homolog 1, Proto-oncogene c-Abl, p150' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSE SRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTVYGVSPNY ; ;GSPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSE SRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTVYGVSPNY ; A ? 2 'polypeptide(L)' no no ;GGSGSSVSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYSTATISGLKPGVDYTIT VYAYDTFFPGYEPNSPISINYRT ; ;GGSGSSVSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYSTATISGLKPGVDYTIT VYAYDTFFPGYEPNSPISINYRT ; D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 SER n 1 5 ASN n 1 6 TYR n 1 7 ILE n 1 8 THR n 1 9 PRO n 1 10 VAL n 1 11 ASN n 1 12 SER n 1 13 LEU n 1 14 GLU n 1 15 LYS n 1 16 HIS n 1 17 SER n 1 18 TRP n 1 19 TYR n 1 20 HIS n 1 21 GLY n 1 22 PRO n 1 23 VAL n 1 24 SER n 1 25 ARG n 1 26 ASN n 1 27 ALA n 1 28 ALA n 1 29 GLU n 1 30 TYR n 1 31 LEU n 1 32 LEU n 1 33 SER n 1 34 SER n 1 35 GLY n 1 36 ILE n 1 37 ASN n 1 38 GLY n 1 39 SER n 1 40 PHE n 1 41 LEU n 1 42 VAL n 1 43 ARG n 1 44 GLU n 1 45 SER n 1 46 GLU n 1 47 SER n 1 48 SER n 1 49 PRO n 1 50 GLY n 1 51 GLN n 1 52 ARG n 1 53 SER n 1 54 ILE n 1 55 SER n 1 56 LEU n 1 57 ARG n 1 58 TYR n 1 59 GLU n 1 60 GLY n 1 61 ARG n 1 62 VAL n 1 63 TYR n 1 64 HIS n 1 65 TYR n 1 66 ARG n 1 67 ILE n 1 68 ASN n 1 69 THR n 1 70 ALA n 1 71 SER n 1 72 ASP n 1 73 GLY n 1 74 LYS n 1 75 LEU n 1 76 TYR n 1 77 VAL n 1 78 SER n 1 79 SER n 1 80 GLU n 1 81 SER n 1 82 ARG n 1 83 PHE n 1 84 ASN n 1 85 THR n 1 86 LEU n 1 87 ALA n 1 88 GLU n 1 89 LEU n 1 90 VAL n 1 91 HIS n 1 92 HIS n 1 93 HIS n 1 94 SER n 1 95 THR n 1 96 VAL n 1 97 ALA n 1 98 ASP n 1 99 GLY n 1 100 LEU n 1 101 ILE n 1 102 THR n 1 103 THR n 1 104 LEU n 1 105 HIS n 1 106 TYR n 1 107 PRO n 1 108 ALA n 1 109 PRO n 1 110 LYS n 1 111 ARG n 1 112 ASN n 1 113 LYS n 1 114 PRO n 1 115 THR n 1 116 VAL n 1 117 TYR n 1 118 GLY n 1 119 VAL n 1 120 SER n 1 121 PRO n 1 122 ASN n 1 123 TYR n 2 1 GLY n 2 2 GLY n 2 3 SER n 2 4 GLY n 2 5 SER n 2 6 SER n 2 7 VAL n 2 8 SER n 2 9 SER n 2 10 VAL n 2 11 PRO n 2 12 THR n 2 13 LYS n 2 14 LEU n 2 15 GLU n 2 16 VAL n 2 17 VAL n 2 18 ASP n 2 19 ALA n 2 20 THR n 2 21 PRO n 2 22 THR n 2 23 SER n 2 24 LEU n 2 25 LYS n 2 26 ILE n 2 27 SER n 2 28 TRP n 2 29 ASP n 2 30 ALA n 2 31 TYR n 2 32 TYR n 2 33 SER n 2 34 SER n 2 35 TRP n 2 36 GLN n 2 37 ASN n 2 38 VAL n 2 39 LYS n 2 40 TYR n 2 41 TYR n 2 42 ARG n 2 43 ILE n 2 44 THR n 2 45 TYR n 2 46 GLY n 2 47 GLU n 2 48 THR n 2 49 GLY n 2 50 GLY n 2 51 ASP n 2 52 SER n 2 53 PRO n 2 54 VAL n 2 55 GLN n 2 56 GLU n 2 57 PHE n 2 58 THR n 2 59 VAL n 2 60 PRO n 2 61 GLY n 2 62 TYR n 2 63 TYR n 2 64 SER n 2 65 THR n 2 66 ALA n 2 67 THR n 2 68 ILE n 2 69 SER n 2 70 GLY n 2 71 LEU n 2 72 LYS n 2 73 PRO n 2 74 GLY n 2 75 VAL n 2 76 ASP n 2 77 TYR n 2 78 THR n 2 79 ILE n 2 80 THR n 2 81 VAL n 2 82 TYR n 2 83 ALA n 2 84 TYR n 2 85 ASP n 2 86 THR n 2 87 PHE n 2 88 PHE n 2 89 PRO n 2 90 GLY n 2 91 TYR n 2 92 GLU n 2 93 PRO n 2 94 ASN n 2 95 SER n 2 96 PRO n 2 97 ILE n 2 98 SER n 2 99 ILE n 2 100 ASN n 2 101 TYR n 2 102 ARG n 2 103 THR n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? 'ABL, ABL1, JTK7' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? ? ? ? ? PHFT2 ? ? 2 1 sample ? ? ? human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? ? ? ? ? PHFT2 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ABL1_HUMAN P00519 1 ;PSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESR FNTLAELVHHHSTVADGLITTLHYPAPKRNKPTVYGVSPNY ; 112 ? 2 PDB 3T04 3T04 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3T04 A 3 ? 123 ? P00519 112 ? 232 ? 131 251 2 2 3T04 D 1 ? 103 ? 3T04 1 ? 103 ? 1 103 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3T04 GLY A 1 ? UNP P00519 ? ? 'EXPRESSION TAG' 129 1 1 3T04 SER A 2 ? UNP P00519 ? ? 'EXPRESSION TAG' 130 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3T04 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_percent_sol 41.03 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '0.2M MG(NO3)2, 100MM LICL, 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K, pH 6.0' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-03-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI 111 SIDE BOUNCE MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97917 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_wavelength 0.97917 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3T04 _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.100 _reflns.number_obs 12700 _reflns.number_all ? _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.13300 _reflns.pdbx_netI_over_sigmaI 11.8000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.200 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.400 _reflns_shell.pdbx_redundancy 5.10 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3T04 _refine.ls_number_reflns_obs 11957 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 98.1 _refine.ls_R_factor_obs 0.193 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.190 _refine.ls_R_factor_R_free 0.251 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 617 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.942 _refine.correlation_coeff_Fo_to_Fc_free 0.902 _refine.B_iso_mean 24.52 _refine.aniso_B[1][1] 1.56000 _refine.aniso_B[2][2] -0.85000 _refine.aniso_B[3][3] -0.72000 _refine.aniso_B[1][2] -0.00000 _refine.aniso_B[1][3] -0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model '1OPK: 154-235, 1FNF: LOOPS OMITTED' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.205 _refine.overall_SU_ML 0.133 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.957 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1580 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 127 _refine_hist.number_atoms_total 1736 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.013 0.021 ? 1652 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.378 1.959 ? 2249 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.710 5.000 ? 199 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 32.370 22.676 ? 71 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 15.008 15.000 ? 238 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 17.743 15.000 ? 9 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.093 0.200 ? 239 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.006 0.021 ? 1268 ? 'X-RAY DIFFRACTION' r_mcbond_it 0.985 1.500 ? 1000 ? 'X-RAY DIFFRACTION' r_mcangle_it 1.824 2.000 ? 1623 ? 'X-RAY DIFFRACTION' r_scbond_it 2.283 3.000 ? 652 ? 'X-RAY DIFFRACTION' r_scangle_it 3.738 4.500 ? 626 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.15 _refine_ls_shell.number_reflns_R_work 805 _refine_ls_shell.R_factor_R_work 0.2140 _refine_ls_shell.percent_reflns_obs 92.42 _refine_ls_shell.R_factor_R_free 0.2660 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3T04 _struct.title 'Crystal structure of monobody 7c12/abl1 sh2 domain complex' _struct.pdbx_descriptor 'Tyrosine-protein kinase ABL1 (E.C.2.7.10.2), MONOBODY 7C12' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3T04 _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN/PROTEIN BINDING' _struct_keywords.text ;ENGINEERED BINDING PROTEIN, ANTIBODY MIMIC, PROTEIN-PROTEIN COMPLEX, SH2 DOMAIN, ATP-BINDING, PHOSPHOPROTEIN, TYROSINE-PROTEIN KINASE, SIGNALING PROTEIN-PROTEIN BINDING complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 24 ? LEU A 32 ? SER A 152 LEU A 160 1 ? 9 HELX_P HELX_P2 2 THR A 85 ? VAL A 96 ? THR A 213 VAL A 224 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 2 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 2 _struct_mon_prot_cis.auth_asym_id D _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 3 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 3 _struct_mon_prot_cis.pdbx_auth_asym_id_2 D _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -6.55 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 3 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 19 ? PRO A 22 ? TYR A 147 PRO A 150 A 2 SER A 39 ? GLU A 44 ? SER A 167 GLU A 172 A 3 ARG A 52 ? TYR A 58 ? ARG A 180 TYR A 186 A 4 ARG A 61 ? THR A 69 ? ARG A 189 THR A 197 A 5 LEU A 75 ? TYR A 76 ? LEU A 203 TYR A 204 B 1 TYR A 19 ? PRO A 22 ? TYR A 147 PRO A 150 B 2 SER A 39 ? GLU A 44 ? SER A 167 GLU A 172 B 3 TYR A 106 ? PRO A 107 ? TYR A 234 PRO A 235 C 1 GLU B 15 ? THR B 20 ? GLU D 15 THR D 20 C 2 SER B 23 ? SER B 27 ? SER D 23 SER D 27 C 3 THR B 65 ? ILE B 68 ? THR D 65 ILE D 68 D 1 GLN B 55 ? PRO B 60 ? GLN D 55 PRO D 60 D 2 TYR B 40 ? GLU B 47 ? TYR D 40 GLU D 47 D 3 TYR B 77 ? TYR B 84 ? TYR D 77 TYR D 84 D 4 ILE B 97 ? TYR B 101 ? ILE D 97 TYR D 101 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS A 20 ? N HIS A 148 O VAL A 42 ? O VAL A 170 A 2 3 N SER A 39 ? N SER A 167 O ARG A 57 ? O ARG A 185 A 3 4 N ARG A 52 ? N ARG A 180 O ILE A 67 ? O ILE A 195 A 4 5 N ASN A 68 ? N ASN A 196 O TYR A 76 ? O TYR A 204 B 1 2 N HIS A 20 ? N HIS A 148 O VAL A 42 ? O VAL A 170 B 2 3 N PHE A 40 ? N PHE A 168 O TYR A 106 ? O TYR A 234 C 1 2 N GLU B 15 ? N GLU D 15 O SER B 27 ? O SER D 27 C 2 3 N LEU B 24 ? N LEU D 24 O ILE B 68 ? O ILE D 68 D 1 2 O PHE B 57 ? O PHE D 57 N ILE B 43 ? N ILE D 43 D 2 3 N THR B 44 ? N THR D 44 O THR B 80 ? O THR D 80 D 3 4 N TYR B 77 ? N TYR D 77 O TYR B 101 ? O TYR D 101 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A 1' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE GOL A 252' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A 253' AC4 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE GOL D 104' AC5 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 D 105' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 SER A 33 ? SER A 161 . ? 1_555 ? 2 AC1 5 ARG A 57 ? ARG A 185 . ? 1_555 ? 3 AC1 5 PRO B 11 ? PRO D 11 . ? 3_545 ? 4 AC1 5 ILE B 97 ? ILE D 97 . ? 3_545 ? 5 AC1 5 SER B 98 ? SER D 98 . ? 3_545 ? 6 AC2 8 ARG A 61 ? ARG A 189 . ? 1_555 ? 7 AC2 8 TYR A 63 ? TYR A 191 . ? 1_555 ? 8 AC2 8 ASP A 72 ? ASP A 200 . ? 4_455 ? 9 AC2 8 GLY B 1 ? GLY D 1 . ? 3_545 ? 10 AC2 8 VAL B 7 ? VAL D 7 . ? 3_545 ? 11 AC2 8 LYS B 72 ? LYS D 72 . ? 2_554 ? 12 AC2 8 VAL B 75 ? VAL D 75 . ? 2_554 ? 13 AC2 8 HOH I . ? HOH D 141 . ? 2_554 ? 14 AC3 5 THR A 95 ? THR A 223 . ? 1_555 ? 15 AC3 5 VAL A 96 ? VAL A 224 . ? 1_555 ? 16 AC3 5 THR B 20 ? THR D 20 . ? 3_555 ? 17 AC3 5 THR B 103 ? THR D 103 . ? 3_555 ? 18 AC3 5 HOH I . ? HOH D 126 . ? 3_555 ? 19 AC4 9 HIS A 91 ? HIS A 219 . ? 3_545 ? 20 AC4 9 SER A 94 ? SER A 222 . ? 3_545 ? 21 AC4 9 THR A 95 ? THR A 223 . ? 3_545 ? 22 AC4 9 ASP B 18 ? ASP D 18 . ? 1_555 ? 23 AC4 9 ALA B 19 ? ALA D 19 . ? 1_555 ? 24 AC4 9 LYS B 39 ? LYS D 39 . ? 3_545 ? 25 AC4 9 ASP B 85 ? ASP D 85 . ? 3_545 ? 26 AC4 9 THR B 86 ? THR D 86 . ? 3_545 ? 27 AC4 9 PHE B 87 ? PHE D 87 . ? 3_545 ? 28 AC5 6 ASP A 72 ? ASP A 200 . ? 3_645 ? 29 AC5 6 GLY A 73 ? GLY A 201 . ? 3_645 ? 30 AC5 6 LYS A 74 ? LYS A 202 . ? 3_645 ? 31 AC5 6 ASN A 84 ? ASN A 212 . ? 3_645 ? 32 AC5 6 LEU B 71 ? LEU D 71 . ? 1_555 ? 33 AC5 6 LYS B 72 ? LYS D 72 . ? 1_555 ? # _database_PDB_matrix.entry_id 3T04 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3T04 _atom_sites.fract_transf_matrix[1][1] 0.025422 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020245 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009315 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 129 ? ? ? A . n A 1 2 SER 2 130 ? ? ? A . n A 1 3 PRO 3 131 ? ? ? A . n A 1 4 SER 4 132 ? ? ? A . n A 1 5 ASN 5 133 ? ? ? A . n A 1 6 TYR 6 134 ? ? ? A . n A 1 7 ILE 7 135 ? ? ? A . n A 1 8 THR 8 136 ? ? ? A . n A 1 9 PRO 9 137 ? ? ? A . n A 1 10 VAL 10 138 ? ? ? A . n A 1 11 ASN 11 139 ? ? ? A . n A 1 12 SER 12 140 ? ? ? A . n A 1 13 LEU 13 141 141 LEU LEU A . n A 1 14 GLU 14 142 142 GLU GLU A . n A 1 15 LYS 15 143 143 LYS LYS A . n A 1 16 HIS 16 144 144 HIS HIS A . n A 1 17 SER 17 145 145 SER SER A . n A 1 18 TRP 18 146 146 TRP TRP A . n A 1 19 TYR 19 147 147 TYR TYR A . n A 1 20 HIS 20 148 148 HIS HIS A . n A 1 21 GLY 21 149 149 GLY GLY A . n A 1 22 PRO 22 150 150 PRO PRO A . n A 1 23 VAL 23 151 151 VAL VAL A . n A 1 24 SER 24 152 152 SER SER A . n A 1 25 ARG 25 153 153 ARG ARG A . n A 1 26 ASN 26 154 154 ASN ASN A . n A 1 27 ALA 27 155 155 ALA ALA A . n A 1 28 ALA 28 156 156 ALA ALA A . n A 1 29 GLU 29 157 157 GLU GLU A . n A 1 30 TYR 30 158 158 TYR TYR A . n A 1 31 LEU 31 159 159 LEU LEU A . n A 1 32 LEU 32 160 160 LEU LEU A . n A 1 33 SER 33 161 161 SER SER A . n A 1 34 SER 34 162 162 SER SER A . n A 1 35 GLY 35 163 163 GLY GLY A . n A 1 36 ILE 36 164 164 ILE ILE A . n A 1 37 ASN 37 165 165 ASN ASN A . n A 1 38 GLY 38 166 166 GLY GLY A . n A 1 39 SER 39 167 167 SER SER A . n A 1 40 PHE 40 168 168 PHE PHE A . n A 1 41 LEU 41 169 169 LEU LEU A . n A 1 42 VAL 42 170 170 VAL VAL A . n A 1 43 ARG 43 171 171 ARG ARG A . n A 1 44 GLU 44 172 172 GLU GLU A . n A 1 45 SER 45 173 173 SER SER A . n A 1 46 GLU 46 174 174 GLU GLU A . n A 1 47 SER 47 175 175 SER SER A . n A 1 48 SER 48 176 176 SER SER A . n A 1 49 PRO 49 177 177 PRO PRO A . n A 1 50 GLY 50 178 178 GLY GLY A . n A 1 51 GLN 51 179 179 GLN GLN A . n A 1 52 ARG 52 180 180 ARG ARG A . n A 1 53 SER 53 181 181 SER SER A . n A 1 54 ILE 54 182 182 ILE ILE A . n A 1 55 SER 55 183 183 SER SER A . n A 1 56 LEU 56 184 184 LEU LEU A . n A 1 57 ARG 57 185 185 ARG ARG A . n A 1 58 TYR 58 186 186 TYR TYR A . n A 1 59 GLU 59 187 187 GLU GLU A . n A 1 60 GLY 60 188 188 GLY GLY A . n A 1 61 ARG 61 189 189 ARG ARG A . n A 1 62 VAL 62 190 190 VAL VAL A . n A 1 63 TYR 63 191 191 TYR TYR A . n A 1 64 HIS 64 192 192 HIS HIS A . n A 1 65 TYR 65 193 193 TYR TYR A . n A 1 66 ARG 66 194 194 ARG ARG A . n A 1 67 ILE 67 195 195 ILE ILE A . n A 1 68 ASN 68 196 196 ASN ASN A . n A 1 69 THR 69 197 197 THR THR A . n A 1 70 ALA 70 198 198 ALA ALA A . n A 1 71 SER 71 199 199 SER SER A . n A 1 72 ASP 72 200 200 ASP ASP A . n A 1 73 GLY 73 201 201 GLY GLY A . n A 1 74 LYS 74 202 202 LYS LYS A . n A 1 75 LEU 75 203 203 LEU LEU A . n A 1 76 TYR 76 204 204 TYR TYR A . n A 1 77 VAL 77 205 205 VAL VAL A . n A 1 78 SER 78 206 206 SER SER A . n A 1 79 SER 79 207 207 SER SER A . n A 1 80 GLU 80 208 208 GLU GLU A . n A 1 81 SER 81 209 209 SER SER A . n A 1 82 ARG 82 210 210 ARG ARG A . n A 1 83 PHE 83 211 211 PHE PHE A . n A 1 84 ASN 84 212 212 ASN ASN A . n A 1 85 THR 85 213 213 THR THR A . n A 1 86 LEU 86 214 214 LEU LEU A . n A 1 87 ALA 87 215 215 ALA ALA A . n A 1 88 GLU 88 216 216 GLU GLU A . n A 1 89 LEU 89 217 217 LEU LEU A . n A 1 90 VAL 90 218 218 VAL VAL A . n A 1 91 HIS 91 219 219 HIS HIS A . n A 1 92 HIS 92 220 220 HIS HIS A . n A 1 93 HIS 93 221 221 HIS HIS A . n A 1 94 SER 94 222 222 SER SER A . n A 1 95 THR 95 223 223 THR THR A . n A 1 96 VAL 96 224 224 VAL VAL A . n A 1 97 ALA 97 225 225 ALA ALA A . n A 1 98 ASP 98 226 226 ASP ASP A . n A 1 99 GLY 99 227 227 GLY GLY A . n A 1 100 LEU 100 228 228 LEU LEU A . n A 1 101 ILE 101 229 229 ILE ILE A . n A 1 102 THR 102 230 230 THR THR A . n A 1 103 THR 103 231 231 THR THR A . n A 1 104 LEU 104 232 232 LEU LEU A . n A 1 105 HIS 105 233 233 HIS HIS A . n A 1 106 TYR 106 234 234 TYR TYR A . n A 1 107 PRO 107 235 235 PRO PRO A . n A 1 108 ALA 108 236 236 ALA ALA A . n A 1 109 PRO 109 237 237 PRO PRO A . n A 1 110 LYS 110 238 238 LYS LYS A . n A 1 111 ARG 111 239 ? ? ? A . n A 1 112 ASN 112 240 ? ? ? A . n A 1 113 LYS 113 241 ? ? ? A . n A 1 114 PRO 114 242 ? ? ? A . n A 1 115 THR 115 243 ? ? ? A . n A 1 116 VAL 116 244 ? ? ? A . n A 1 117 TYR 117 245 ? ? ? A . n A 1 118 GLY 118 246 ? ? ? A . n A 1 119 VAL 119 247 ? ? ? A . n A 1 120 SER 120 248 ? ? ? A . n A 1 121 PRO 121 249 ? ? ? A . n A 1 122 ASN 122 250 ? ? ? A . n A 1 123 TYR 123 251 ? ? ? A . n B 2 1 GLY 1 1 1 GLY GLY D . n B 2 2 GLY 2 2 2 GLY GLY D . n B 2 3 SER 3 3 3 SER SER D . n B 2 4 GLY 4 4 4 GLY GLY D . n B 2 5 SER 5 5 5 SER SER D . n B 2 6 SER 6 6 6 SER SER D . n B 2 7 VAL 7 7 7 VAL VAL D . n B 2 8 SER 8 8 8 SER SER D . n B 2 9 SER 9 9 9 SER SER D . n B 2 10 VAL 10 10 10 VAL VAL D . n B 2 11 PRO 11 11 11 PRO PRO D . n B 2 12 THR 12 12 12 THR THR D . n B 2 13 LYS 13 13 13 LYS LYS D . n B 2 14 LEU 14 14 14 LEU LEU D . n B 2 15 GLU 15 15 15 GLU GLU D . n B 2 16 VAL 16 16 16 VAL VAL D . n B 2 17 VAL 17 17 17 VAL VAL D . n B 2 18 ASP 18 18 18 ASP ASP D . n B 2 19 ALA 19 19 19 ALA ALA D . n B 2 20 THR 20 20 20 THR THR D . n B 2 21 PRO 21 21 21 PRO PRO D . n B 2 22 THR 22 22 22 THR THR D . n B 2 23 SER 23 23 23 SER SER D . n B 2 24 LEU 24 24 24 LEU LEU D . n B 2 25 LYS 25 25 25 LYS LYS D . n B 2 26 ILE 26 26 26 ILE ILE D . n B 2 27 SER 27 27 27 SER SER D . n B 2 28 TRP 28 28 28 TRP TRP D . n B 2 29 ASP 29 29 29 ASP ASP D . n B 2 30 ALA 30 30 30 ALA ALA D . n B 2 31 TYR 31 31 31 TYR TYR D . n B 2 32 TYR 32 32 32 TYR TYR D . n B 2 33 SER 33 33 33 SER SER D . n B 2 34 SER 34 34 34 SER SER D . n B 2 35 TRP 35 35 35 TRP TRP D . n B 2 36 GLN 36 36 36 GLN GLN D . n B 2 37 ASN 37 37 37 ASN ASN D . n B 2 38 VAL 38 38 38 VAL VAL D . n B 2 39 LYS 39 39 39 LYS LYS D . n B 2 40 TYR 40 40 40 TYR TYR D . n B 2 41 TYR 41 41 41 TYR TYR D . n B 2 42 ARG 42 42 42 ARG ARG D . n B 2 43 ILE 43 43 43 ILE ILE D . n B 2 44 THR 44 44 44 THR THR D . n B 2 45 TYR 45 45 45 TYR TYR D . n B 2 46 GLY 46 46 46 GLY GLY D . n B 2 47 GLU 47 47 47 GLU GLU D . n B 2 48 THR 48 48 48 THR THR D . n B 2 49 GLY 49 49 49 GLY GLY D . n B 2 50 GLY 50 50 50 GLY GLY D . n B 2 51 ASP 51 51 51 ASP ASP D . n B 2 52 SER 52 52 52 SER SER D . n B 2 53 PRO 53 53 53 PRO PRO D . n B 2 54 VAL 54 54 54 VAL VAL D . n B 2 55 GLN 55 55 55 GLN GLN D . n B 2 56 GLU 56 56 56 GLU GLU D . n B 2 57 PHE 57 57 57 PHE PHE D . n B 2 58 THR 58 58 58 THR THR D . n B 2 59 VAL 59 59 59 VAL VAL D . n B 2 60 PRO 60 60 60 PRO PRO D . n B 2 61 GLY 61 61 61 GLY GLY D . n B 2 62 TYR 62 62 62 TYR TYR D . n B 2 63 TYR 63 63 63 TYR TYR D . n B 2 64 SER 64 64 64 SER SER D . n B 2 65 THR 65 65 65 THR THR D . n B 2 66 ALA 66 66 66 ALA ALA D . n B 2 67 THR 67 67 67 THR THR D . n B 2 68 ILE 68 68 68 ILE ILE D . n B 2 69 SER 69 69 69 SER SER D . n B 2 70 GLY 70 70 70 GLY GLY D . n B 2 71 LEU 71 71 71 LEU LEU D . n B 2 72 LYS 72 72 72 LYS LYS D . n B 2 73 PRO 73 73 73 PRO PRO D . n B 2 74 GLY 74 74 74 GLY GLY D . n B 2 75 VAL 75 75 75 VAL VAL D . n B 2 76 ASP 76 76 76 ASP ASP D . n B 2 77 TYR 77 77 77 TYR TYR D . n B 2 78 THR 78 78 78 THR THR D . n B 2 79 ILE 79 79 79 ILE ILE D . n B 2 80 THR 80 80 80 THR THR D . n B 2 81 VAL 81 81 81 VAL VAL D . n B 2 82 TYR 82 82 82 TYR TYR D . n B 2 83 ALA 83 83 83 ALA ALA D . n B 2 84 TYR 84 84 84 TYR TYR D . n B 2 85 ASP 85 85 85 ASP ASP D . n B 2 86 THR 86 86 86 THR THR D . n B 2 87 PHE 87 87 87 PHE PHE D . n B 2 88 PHE 88 88 88 PHE PHE D . n B 2 89 PRO 89 89 89 PRO PRO D . n B 2 90 GLY 90 90 90 GLY GLY D . n B 2 91 TYR 91 91 91 TYR TYR D . n B 2 92 GLU 92 92 92 GLU GLU D . n B 2 93 PRO 93 93 93 PRO PRO D . n B 2 94 ASN 94 94 94 ASN ASN D . n B 2 95 SER 95 95 95 SER SER D . n B 2 96 PRO 96 96 96 PRO PRO D . n B 2 97 ILE 97 97 97 ILE ILE D . n B 2 98 SER 98 98 98 SER SER D . n B 2 99 ILE 99 99 99 ILE ILE D . n B 2 100 ASN 100 100 100 ASN ASN D . n B 2 101 TYR 101 101 101 TYR TYR D . n B 2 102 ARG 102 102 102 ARG ARG D . n B 2 103 THR 103 103 103 THR THR D . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA dimeric 2 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I 2 1 A,C,D,E,H 2 2 B,F,G,I 3 1 A,C,D,E,H 3 3 B,F,G,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2170 ? 1 MORE -20 ? 1 'SSA (A^2)' 11220 ? 2 'ABSA (A^2)' 1050 ? 2 MORE -22 ? 2 'SSA (A^2)' 12340 ? 3 'ABSA (A^2)' 2170 ? 3 MORE -18 ? 3 'SSA (A^2)' 11220 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_655 -x+1,y+1/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 39.3360000000 0.0000000000 1.0000000000 0.0000000000 24.6980000000 0.0000000000 0.0000000000 -1.0000000000 53.6770000000 3 'crystal symmetry operation' 3_545 -x,y-1/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -24.6980000000 0.0000000000 0.0000000000 -1.0000000000 53.6770000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2011-11-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASER phasing . ? 1 REFMAC refinement 5.5.0109 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O D HOH 122 ? ? O D HOH 142 ? ? 2.10 2 1 O A HOH 4 ? ? O A HOH 12 ? ? 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR D 31 ? ? -140.41 -52.74 2 1 SER D 52 ? ? -41.18 155.07 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 129 ? A GLY 1 2 1 Y 1 A SER 130 ? A SER 2 3 1 Y 1 A PRO 131 ? A PRO 3 4 1 Y 1 A SER 132 ? A SER 4 5 1 Y 1 A ASN 133 ? A ASN 5 6 1 Y 1 A TYR 134 ? A TYR 6 7 1 Y 1 A ILE 135 ? A ILE 7 8 1 Y 1 A THR 136 ? A THR 8 9 1 Y 1 A PRO 137 ? A PRO 9 10 1 Y 1 A VAL 138 ? A VAL 10 11 1 Y 1 A ASN 139 ? A ASN 11 12 1 Y 1 A SER 140 ? A SER 12 13 1 Y 1 A ARG 239 ? A ARG 111 14 1 Y 1 A ASN 240 ? A ASN 112 15 1 Y 1 A LYS 241 ? A LYS 113 16 1 Y 1 A PRO 242 ? A PRO 114 17 1 Y 1 A THR 243 ? A THR 115 18 1 Y 1 A VAL 244 ? A VAL 116 19 1 Y 1 A TYR 245 ? A TYR 117 20 1 Y 1 A GLY 246 ? A GLY 118 21 1 Y 1 A VAL 247 ? A VAL 119 22 1 Y 1 A SER 248 ? A SER 120 23 1 Y 1 A PRO 249 ? A PRO 121 24 1 Y 1 A ASN 250 ? A ASN 122 25 1 Y 1 A TYR 251 ? A TYR 123 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 'SULFATE ION' SO4 5 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL 1 1 1 GOL GOL A . D 3 GOL 1 252 252 GOL GOL A . E 3 GOL 1 253 253 GOL GOL A . F 3 GOL 1 104 104 GOL GOL D . G 4 SO4 1 105 105 SO4 SO4 D . H 5 HOH 1 3 3 HOH HOH A . H 5 HOH 2 4 4 HOH HOH A . H 5 HOH 3 5 5 HOH HOH A . H 5 HOH 4 8 8 HOH HOH A . H 5 HOH 5 9 9 HOH HOH A . H 5 HOH 6 11 11 HOH HOH A . H 5 HOH 7 12 12 HOH HOH A . H 5 HOH 8 14 14 HOH HOH A . H 5 HOH 9 17 17 HOH HOH A . H 5 HOH 10 19 19 HOH HOH A . H 5 HOH 11 20 20 HOH HOH A . H 5 HOH 12 23 23 HOH HOH A . H 5 HOH 13 24 24 HOH HOH A . H 5 HOH 14 25 25 HOH HOH A . H 5 HOH 15 26 26 HOH HOH A . H 5 HOH 16 27 27 HOH HOH A . H 5 HOH 17 28 28 HOH HOH A . H 5 HOH 18 31 31 HOH HOH A . H 5 HOH 19 37 37 HOH HOH A . H 5 HOH 20 39 39 HOH HOH A . H 5 HOH 21 40 40 HOH HOH A . H 5 HOH 22 41 41 HOH HOH A . H 5 HOH 23 45 45 HOH HOH A . H 5 HOH 24 46 46 HOH HOH A . H 5 HOH 25 49 49 HOH HOH A . H 5 HOH 26 52 52 HOH HOH A . H 5 HOH 27 53 53 HOH HOH A . H 5 HOH 28 55 55 HOH HOH A . H 5 HOH 29 57 57 HOH HOH A . H 5 HOH 30 58 58 HOH HOH A . H 5 HOH 31 61 61 HOH HOH A . H 5 HOH 32 64 64 HOH HOH A . H 5 HOH 33 67 67 HOH HOH A . H 5 HOH 34 70 70 HOH HOH A . H 5 HOH 35 71 71 HOH HOH A . H 5 HOH 36 72 72 HOH HOH A . H 5 HOH 37 77 77 HOH HOH A . H 5 HOH 38 78 78 HOH HOH A . H 5 HOH 39 80 80 HOH HOH A . H 5 HOH 40 81 81 HOH HOH A . H 5 HOH 41 82 82 HOH HOH A . H 5 HOH 42 85 85 HOH HOH A . H 5 HOH 43 89 89 HOH HOH A . H 5 HOH 44 90 90 HOH HOH A . H 5 HOH 45 91 91 HOH HOH A . H 5 HOH 46 94 94 HOH HOH A . H 5 HOH 47 95 95 HOH HOH A . H 5 HOH 48 97 97 HOH HOH A . H 5 HOH 49 98 98 HOH HOH A . H 5 HOH 50 100 100 HOH HOH A . H 5 HOH 51 102 102 HOH HOH A . H 5 HOH 52 103 103 HOH HOH A . H 5 HOH 53 105 105 HOH HOH A . H 5 HOH 54 106 106 HOH HOH A . H 5 HOH 55 109 109 HOH HOH A . H 5 HOH 56 110 110 HOH HOH A . H 5 HOH 57 111 111 HOH HOH A . H 5 HOH 58 112 112 HOH HOH A . H 5 HOH 59 113 113 HOH HOH A . H 5 HOH 60 118 118 HOH HOH A . H 5 HOH 61 120 120 HOH HOH A . H 5 HOH 62 121 121 HOH HOH A . H 5 HOH 63 122 122 HOH HOH A . H 5 HOH 64 255 255 HOH HOH A . H 5 HOH 65 256 256 HOH HOH A . H 5 HOH 66 257 257 HOH HOH A . I 5 HOH 1 106 106 HOH HOH D . I 5 HOH 2 107 107 HOH HOH D . I 5 HOH 3 108 108 HOH HOH D . I 5 HOH 4 109 109 HOH HOH D . I 5 HOH 5 110 110 HOH HOH D . I 5 HOH 6 111 111 HOH HOH D . I 5 HOH 7 112 112 HOH HOH D . I 5 HOH 8 113 113 HOH HOH D . I 5 HOH 9 114 114 HOH HOH D . I 5 HOH 10 115 115 HOH HOH D . I 5 HOH 11 116 116 HOH HOH D . I 5 HOH 12 117 117 HOH HOH D . I 5 HOH 13 118 118 HOH HOH D . I 5 HOH 14 119 119 HOH HOH D . I 5 HOH 15 120 120 HOH HOH D . I 5 HOH 16 121 121 HOH HOH D . I 5 HOH 17 122 122 HOH HOH D . I 5 HOH 18 123 123 HOH HOH D . I 5 HOH 19 124 124 HOH HOH D . I 5 HOH 20 125 125 HOH HOH D . I 5 HOH 21 126 126 HOH HOH D . I 5 HOH 22 127 127 HOH HOH D . I 5 HOH 23 128 128 HOH HOH D . I 5 HOH 24 129 129 HOH HOH D . I 5 HOH 25 130 130 HOH HOH D . I 5 HOH 26 131 131 HOH HOH D . I 5 HOH 27 132 132 HOH HOH D . I 5 HOH 28 133 133 HOH HOH D . I 5 HOH 29 134 134 HOH HOH D . I 5 HOH 30 135 135 HOH HOH D . I 5 HOH 31 136 136 HOH HOH D . I 5 HOH 32 137 137 HOH HOH D . I 5 HOH 33 138 138 HOH HOH D . I 5 HOH 34 139 139 HOH HOH D . I 5 HOH 35 140 140 HOH HOH D . I 5 HOH 36 141 141 HOH HOH D . I 5 HOH 37 142 142 HOH HOH D . I 5 HOH 38 143 143 HOH HOH D . I 5 HOH 39 144 144 HOH HOH D . I 5 HOH 40 145 145 HOH HOH D . I 5 HOH 41 146 146 HOH HOH D . I 5 HOH 42 147 147 HOH HOH D . I 5 HOH 43 148 148 HOH HOH D . I 5 HOH 44 150 150 HOH HOH D . I 5 HOH 45 152 152 HOH HOH D . I 5 HOH 46 153 153 HOH HOH D . I 5 HOH 47 154 154 HOH HOH D . I 5 HOH 48 155 155 HOH HOH D . I 5 HOH 49 156 156 HOH HOH D . I 5 HOH 50 157 157 HOH HOH D . I 5 HOH 51 158 158 HOH HOH D . I 5 HOH 52 159 159 HOH HOH D . I 5 HOH 53 160 160 HOH HOH D . I 5 HOH 54 161 161 HOH HOH D . I 5 HOH 55 163 163 HOH HOH D . I 5 HOH 56 164 164 HOH HOH D . I 5 HOH 57 165 165 HOH HOH D . I 5 HOH 58 166 166 HOH HOH D . I 5 HOH 59 167 167 HOH HOH D . I 5 HOH 60 168 168 HOH HOH D . I 5 HOH 61 254 254 HOH HOH D . #