data_3T5E # _entry.id 3T5E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3T5E pdb_00003t5e 10.2210/pdb3t5e/pdb NDB NA1249 ? ? RCSB RCSB067058 ? ? WWPDB D_1000067058 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3SC8 'Same G-quadruplex bound by a related naphthalene diimide compound BMSG-SH1' unspecified PDB 1KF1 'Equivalent native G-quadruplex' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3T5E _pdbx_database_status.recvd_initial_deposition_date 2011-07-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Collie, G.W.' 1 'Promontorio, R.' 2 'Parkinson, G.N.' 3 # _citation.id primary _citation.title 'Structural basis for telomeric g-quadruplex targeting by naphthalene diimide ligands.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 134 _citation.page_first 2723 _citation.page_last 2731 _citation.year 2012 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22280460 _citation.pdbx_database_id_DOI 10.1021/ja2102423 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Collie, G.W.' 1 ? primary 'Promontorio, R.' 2 ? primary 'Hampel, S.M.' 3 ? primary 'Micco, M.' 4 ? primary 'Neidle, S.' 5 ? primary 'Parkinson, G.N.' 6 ? # _cell.entry_id 3T5E _cell.length_a 63.034 _cell.length_b 63.034 _cell.length_c 42.389 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3T5E _symmetry.space_group_name_H-M 'P 6' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'human telomeric DNA sequence' 6983.497 1 ? ? ? ? 2 non-polymer syn ;2,7-bis[4-(4-methylpiperazin-1-yl)butyl]-4,9-bis{[4-(4-methylpiperazin-1-yl)butyl]amino}benzo[lmn][3,8]phenanthroline-1 ,3,6,8(2H,7H)-tetrone ; 913.248 1 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 4 water nat water 18.015 38 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG) (DG)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can AGGGTTAGGGTTAGGGTTAGGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DT n 1 7 DA n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DT n 1 12 DT n 1 13 DA n 1 14 DG n 1 15 DG n 1 16 DG n 1 17 DT n 1 18 DT n 1 19 DA n 1 20 DG n 1 21 DG n 1 22 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'DNA sequence synthesised by standard phosphoramidite chemistry' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3T5E _struct_ref.pdbx_db_accession 3T5E _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code AGGGTTAGGGTTAGGGTTAGGG _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3T5E _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3T5E _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 22 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 T5E non-polymer . ;2,7-bis[4-(4-methylpiperazin-1-yl)butyl]-4,9-bis{[4-(4-methylpiperazin-1-yl)butyl]amino}benzo[lmn][3,8]phenanthroline-1 ,3,6,8(2H,7H)-tetrone ; BMSG-SH2 'C50 H80 N12 O4' 913.248 # _exptl.entry_id 3T5E _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.48 _exptl_crystal.density_percent_sol 64.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 283 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '15% PEG400, 300 mM KBr, 50 mM sodium cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 283K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-07-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si III channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97949 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97949 # _reflns.entry_id 3T5E _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 54.59 _reflns.d_resolution_high 1.94 _reflns.number_obs 7197 _reflns.number_all 7197 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.2 _reflns.B_iso_Wilson_estimate 42.15 _reflns.pdbx_redundancy 8.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.94 _reflns_shell.d_res_low 1.99 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.66 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_redundancy 7.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 531 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3T5E _refine.ls_number_reflns_obs 5372 _refine.ls_number_reflns_all 5372 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.20 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.24474 _refine.ls_R_factor_all 0.24474 _refine.ls_R_factor_R_work 0.24286 _refine.ls_R_factor_R_free 0.28158 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 262 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.935 _refine.B_iso_mean 40.688 _refine.aniso_B[1][1] -0.12 _refine.aniso_B[2][2] -0.12 _refine.aniso_B[3][3] 0.19 _refine.aniso_B[1][2] -0.06 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 1KF1' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model 'Isotropic plus TLS' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.196 _refine.overall_SU_ML 0.134 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 9.672 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.223 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 465 _refine_hist.pdbx_number_atoms_ligand 69 _refine_hist.number_atoms_solvent 38 _refine_hist.number_atoms_total 572 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 10.20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.008 0.021 ? 597 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.622 2.999 ? 914 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.055 0.200 ? 87 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.006 0.020 ? 272 ? 'X-RAY DIFFRACTION' r_scbond_it 1.465 3.000 ? 597 ? 'X-RAY DIFFRACTION' r_scangle_it 2.359 4.500 ? 914 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.100 _refine_ls_shell.d_res_low 2.152 _refine_ls_shell.number_reflns_R_work 373 _refine_ls_shell.R_factor_R_work 0.385 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.448 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 15 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3T5E _struct.title 'Crystal structure of an intramolecular human telomeric DNA G-quadruplex bound by the naphthalene diimide BMSG-SH-4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3T5E _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'G-quadruplex, intramolecular, ligand-complex, telomeric, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 2 O6 ? ? ? 1_555 D K . K ? ? A DG 2 A K 25 1_555 ? ? ? ? ? ? ? 2.642 ? ? metalc2 metalc ? ? A DG 2 O6 ? ? ? 1_555 E K . K ? ? A DG 2 A K 26 1_555 ? ? ? ? ? ? ? 2.876 ? ? metalc3 metalc ? ? A DG 3 O6 ? ? ? 1_555 C K . K ? ? A DG 3 A K 24 1_555 ? ? ? ? ? ? ? 2.971 ? ? metalc4 metalc ? ? A DG 3 O6 ? ? ? 1_555 D K . K ? ? A DG 3 A K 25 1_555 ? ? ? ? ? ? ? 2.698 ? ? metalc5 metalc ? ? A DG 4 O6 ? ? ? 1_555 C K . K ? ? A DG 4 A K 24 1_555 ? ? ? ? ? ? ? 2.683 ? ? metalc6 metalc ? ? A DG 8 O6 ? ? ? 1_555 D K . K ? ? A DG 8 A K 25 1_555 ? ? ? ? ? ? ? 2.772 ? ? metalc7 metalc ? ? A DG 8 O6 ? ? ? 1_555 E K . K ? ? A DG 8 A K 26 1_555 ? ? ? ? ? ? ? 2.772 ? ? metalc8 metalc ? ? A DG 9 O6 ? ? ? 1_555 C K . K ? ? A DG 9 A K 24 1_555 ? ? ? ? ? ? ? 2.917 ? ? metalc9 metalc ? ? A DG 9 O6 ? ? ? 1_555 D K . K ? ? A DG 9 A K 25 1_555 ? ? ? ? ? ? ? 2.574 ? ? metalc10 metalc ? ? A DG 10 O6 ? ? ? 1_555 C K . K ? ? A DG 10 A K 24 1_555 ? ? ? ? ? ? ? 2.590 ? ? metalc11 metalc ? ? A DG 14 O6 ? ? ? 1_555 D K . K ? ? A DG 14 A K 25 1_555 ? ? ? ? ? ? ? 2.802 ? ? metalc12 metalc ? ? A DG 14 O6 ? ? ? 1_555 E K . K ? ? A DG 14 A K 26 1_555 ? ? ? ? ? ? ? 2.755 ? ? metalc13 metalc ? ? A DG 15 O6 ? ? ? 1_555 C K . K ? ? A DG 15 A K 24 1_555 ? ? ? ? ? ? ? 3.051 ? ? metalc14 metalc ? ? A DG 15 O6 ? ? ? 1_555 D K . K ? ? A DG 15 A K 25 1_555 ? ? ? ? ? ? ? 2.737 ? ? metalc15 metalc ? ? A DG 16 O6 ? ? ? 1_555 C K . K ? ? A DG 16 A K 24 1_555 ? ? ? ? ? ? ? 2.626 ? ? metalc16 metalc ? ? A DG 20 O6 ? ? ? 1_555 D K . K ? ? A DG 20 A K 25 1_555 ? ? ? ? ? ? ? 2.787 ? ? metalc17 metalc ? ? A DG 20 O6 ? ? ? 1_555 E K . K ? ? A DG 20 A K 26 1_555 ? ? ? ? ? ? ? 2.876 ? ? metalc18 metalc ? ? A DG 21 O6 ? ? ? 1_555 C K . K ? ? A DG 21 A K 24 1_555 ? ? ? ? ? ? ? 2.964 ? ? metalc19 metalc ? ? A DG 21 O6 ? ? ? 1_555 D K . K ? ? A DG 21 A K 25 1_555 ? ? ? ? ? ? ? 2.770 ? ? metalc20 metalc ? ? A DG 22 O6 ? ? ? 1_555 C K . K ? ? A DG 22 A K 24 1_555 ? ? ? ? ? ? ? 2.714 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 2 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 2 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 20 N2 ? ? A DG 2 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 20 N1 ? ? A DG 2 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 21 N2 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 21 N1 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 22 N2 ? ? A DG 4 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 22 N1 ? ? A DG 4 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 14 O6 ? ? A DG 8 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 14 N7 ? ? A DG 8 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 9 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 9 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 16 O6 ? ? A DG 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 16 N7 ? ? A DG 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DG 20 O6 ? ? A DG 14 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 20 N7 ? ? A DG 14 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 21 O6 ? ? A DG 15 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 21 N7 ? ? A DG 15 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 16 N1 ? ? ? 1_555 A DG 22 O6 ? ? A DG 16 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 16 N2 ? ? ? 1_555 A DG 22 N7 ? ? A DG 16 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A T5E 23 ? 12 'BINDING SITE FOR RESIDUE T5E A 23' AC2 Software A K 24 ? 9 'BINDING SITE FOR RESIDUE K A 24' AC3 Software A K 25 ? 11 'BINDING SITE FOR RESIDUE K A 25' AC4 Software A K 26 ? 10 'BINDING SITE FOR RESIDUE K A 26' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 DA A 1 ? DA A 1 . ? 2_565 ? 2 AC1 12 DG A 4 ? DG A 4 . ? 1_555 ? 3 AC1 12 DG A 8 ? DG A 8 . ? 1_555 ? 4 AC1 12 DG A 9 ? DG A 9 . ? 1_555 ? 5 AC1 12 DG A 10 ? DG A 10 . ? 1_555 ? 6 AC1 12 DT A 11 ? DT A 11 . ? 1_555 ? 7 AC1 12 DT A 12 ? DT A 12 . ? 5_555 ? 8 AC1 12 DA A 13 ? DA A 13 . ? 1_555 ? 9 AC1 12 DG A 16 ? DG A 16 . ? 1_555 ? 10 AC1 12 DT A 17 ? DT A 17 . ? 1_555 ? 11 AC1 12 DG A 21 ? DG A 21 . ? 1_555 ? 12 AC1 12 DG A 22 ? DG A 22 . ? 1_555 ? 13 AC2 9 DG A 3 ? DG A 3 . ? 1_555 ? 14 AC2 9 DG A 4 ? DG A 4 . ? 1_555 ? 15 AC2 9 DG A 9 ? DG A 9 . ? 1_555 ? 16 AC2 9 DG A 10 ? DG A 10 . ? 1_555 ? 17 AC2 9 DG A 15 ? DG A 15 . ? 1_555 ? 18 AC2 9 DG A 16 ? DG A 16 . ? 1_555 ? 19 AC2 9 DG A 21 ? DG A 21 . ? 1_555 ? 20 AC2 9 DG A 22 ? DG A 22 . ? 1_555 ? 21 AC2 9 K D . ? K A 25 . ? 1_555 ? 22 AC3 11 DG A 2 ? DG A 2 . ? 1_555 ? 23 AC3 11 DG A 3 ? DG A 3 . ? 1_555 ? 24 AC3 11 DG A 8 ? DG A 8 . ? 1_555 ? 25 AC3 11 DG A 9 ? DG A 9 . ? 1_555 ? 26 AC3 11 DG A 14 ? DG A 14 . ? 1_555 ? 27 AC3 11 DG A 15 ? DG A 15 . ? 1_555 ? 28 AC3 11 DG A 20 ? DG A 20 . ? 1_555 ? 29 AC3 11 DG A 21 ? DG A 21 . ? 1_555 ? 30 AC3 11 K C . ? K A 24 . ? 1_555 ? 31 AC3 11 K E . ? K A 26 . ? 4_455 ? 32 AC3 11 K E . ? K A 26 . ? 1_555 ? 33 AC4 10 DG A 2 ? DG A 2 . ? 4_455 ? 34 AC4 10 DG A 2 ? DG A 2 . ? 1_555 ? 35 AC4 10 DG A 8 ? DG A 8 . ? 4_455 ? 36 AC4 10 DG A 8 ? DG A 8 . ? 1_555 ? 37 AC4 10 DG A 14 ? DG A 14 . ? 4_455 ? 38 AC4 10 DG A 14 ? DG A 14 . ? 1_555 ? 39 AC4 10 DG A 20 ? DG A 20 . ? 1_555 ? 40 AC4 10 DG A 20 ? DG A 20 . ? 4_455 ? 41 AC4 10 K D . ? K A 25 . ? 1_555 ? 42 AC4 10 K D . ? K A 25 . ? 4_455 ? # _database_PDB_matrix.entry_id 3T5E _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3T5E _atom_sites.fract_transf_matrix[1][1] 0.015864 _atom_sites.fract_transf_matrix[1][2] 0.009159 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018319 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023591 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DT 11 11 11 DT T A . n A 1 12 DT 12 12 12 DT T A . n A 1 13 DA 13 13 13 DA A A . n A 1 14 DG 14 14 14 DG G A . n A 1 15 DG 15 15 15 DG G A . n A 1 16 DG 16 16 16 DG G A . n A 1 17 DT 17 17 17 DT T A . n A 1 18 DT 18 18 18 DT T A . n A 1 19 DA 19 19 19 DA A A . n A 1 20 DG 20 20 20 DG G A . n A 1 21 DG 21 21 21 DG G A . n A 1 22 DG 22 22 22 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T5E 1 23 1 T5E T5E A . C 3 K 1 24 24 K K A . D 3 K 1 25 25 K K A . E 3 K 1 26 26 K K A . F 4 HOH 1 27 27 HOH HOH A . F 4 HOH 2 28 28 HOH HOH A . F 4 HOH 3 29 29 HOH HOH A . F 4 HOH 4 30 30 HOH HOH A . F 4 HOH 5 31 31 HOH HOH A . F 4 HOH 6 32 32 HOH HOH A . F 4 HOH 7 33 1 HOH HOH A . F 4 HOH 8 34 34 HOH HOH A . F 4 HOH 9 35 2 HOH HOH A . F 4 HOH 10 36 36 HOH HOH A . F 4 HOH 11 37 37 HOH HOH A . F 4 HOH 12 38 38 HOH HOH A . F 4 HOH 13 39 4 HOH HOH A . F 4 HOH 14 40 6 HOH HOH A . F 4 HOH 15 41 7 HOH HOH A . F 4 HOH 16 42 42 HOH HOH A . F 4 HOH 17 43 43 HOH HOH A . F 4 HOH 18 44 44 HOH HOH A . F 4 HOH 19 45 45 HOH HOH A . F 4 HOH 20 46 46 HOH HOH A . F 4 HOH 21 47 8 HOH HOH A . F 4 HOH 22 48 9 HOH HOH A . F 4 HOH 23 49 10 HOH HOH A . F 4 HOH 24 50 11 HOH HOH A . F 4 HOH 25 51 12 HOH HOH A . F 4 HOH 26 52 13 HOH HOH A . F 4 HOH 27 53 14 HOH HOH A . F 4 HOH 28 54 15 HOH HOH A . F 4 HOH 29 55 16 HOH HOH A . F 4 HOH 30 56 17 HOH HOH A . F 4 HOH 31 57 18 HOH HOH A . F 4 HOH 32 58 19 HOH HOH A . F 4 HOH 33 59 20 HOH HOH A . F 4 HOH 34 60 21 HOH HOH A . F 4 HOH 35 61 22 HOH HOH A . F 4 HOH 36 62 23 HOH HOH A . F 4 HOH 37 63 24 HOH HOH A . F 4 HOH 38 64 25 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id K _pdbx_struct_special_symmetry.auth_seq_id 26 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id K _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 75.9 ? 2 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 68.0 ? 3 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 90.1 ? 4 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 132.9 ? 5 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 71.2 ? 6 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 79.2 ? 7 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 108.2 ? 8 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 154.5 ? 9 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 69.4 ? 10 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 89.7 ? 11 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 155.0 ? 12 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 112.2 ? 13 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 133.2 ? 14 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 70.8 ? 15 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 75.1 ? 16 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 71.7 ? 17 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 132.9 ? 18 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 107.8 ? 19 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 153.4 ? 20 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 70.1 ? 21 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 87.0 ? 22 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 89.9 ? 23 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 71.0 ? 24 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 154.1 ? 25 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 109.5 ? 26 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 133.0 ? 27 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 71.9 ? 28 O6 ? A DG 20 ? A DG 20 ? 1_555 K ? D K . ? A K 25 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 75.7 ? 29 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? E K . ? A K 26 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 64.8 ? 30 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? E K . ? A K 26 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 103.1 ? 31 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? E K . ? A K 26 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 70.1 ? 32 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? E K . ? A K 26 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 67.2 ? 33 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? E K . ? A K 26 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 105.3 ? 34 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? E K . ? A K 26 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 69.4 ? 35 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 73.3 ? 36 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 62.9 ? 37 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 93.2 ? 38 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 126.1 ? 39 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 77.7 ? 40 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 74.8 ? 41 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 97.0 ? 42 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 154.9 ? 43 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 62.1 ? 44 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 90.7 ? 45 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 155.6 ? 46 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 124.3 ? 47 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 125.9 ? 48 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 77.1 ? 49 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 73.2 ? 50 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 64.7 ? 51 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 126.3 ? 52 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 95.8 ? 53 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 155.3 ? 54 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 65.0 ? 55 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 91.0 ? 56 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 91.6 ? 57 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 76.9 ? 58 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 154.4 ? 59 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 124.5 ? 60 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 127.3 ? 61 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 78.0 ? 62 O6 ? A DG 21 ? A DG 21 ? 1_555 K ? C K . ? A K 24 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 72.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-02-15 2 'Structure model' 1 1 2012-02-22 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' entity 6 3 'Structure model' pdbx_entity_nonpoly 7 3 'Structure model' pdbx_initial_refinement_model 8 3 'Structure model' pdbx_struct_conn_angle 9 3 'Structure model' struct_conn 10 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.name' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_entity.pdbx_description' 5 3 'Structure model' '_pdbx_entity_nonpoly.name' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.value' 13 3 'Structure model' '_struct_conn.pdbx_dist_value' 14 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 16 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 19 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 20 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -32.0340 7.3756 -4.6732 0.1236 0.1236 0.1236 0.0000 0.0000 0.0000 0.0016 0.0002 0.0000 -0.0006 0.0001 -0.0001 -0.4401 -0.5931 0.9488 0.2709 0.2411 0.0693 -0.7166 -0.5570 0.1989 'X-RAY DIFFRACTION' 2 ? refined -26.0653 1.0155 1.5139 0.1108 0.1122 0.1354 -0.0017 -0.0013 0.0032 0.0383 0.1979 10.0792 -0.0870 -0.6211 1.4122 -0.0118 -0.3085 0.1188 0.3177 0.0804 -0.1556 0.0824 0.2819 -0.0685 'X-RAY DIFFRACTION' 3 ? refined -17.7297 -5.6219 -11.1316 0.1983 0.2132 0.1955 -0.0062 -0.0014 -0.0009 1.1106 8.6439 0.0041 -3.0983 0.0671 -0.1872 0.0152 0.2214 -0.2858 -0.2446 0.0211 -0.6145 0.3820 0.5307 -0.0364 'X-RAY DIFFRACTION' 4 ? refined -28.6497 4.6698 -17.9263 0.1063 0.1076 0.1394 -0.0068 -0.0004 0.0017 2.2129 0.5016 6.8960 0.8673 0.4796 -0.8601 0.0808 0.3244 0.0534 -0.4719 -0.0705 -0.0607 -0.1696 0.0329 -0.0103 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 4 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 5 ? ? A 9 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 10 ? ? A 13 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 14 ? ? A 22 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal GDA 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0072 ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.10 108.30 1.80 0.30 N 2 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 103.62 108.00 -4.38 0.70 N 3 1 "O5'" A DG 14 ? ? "C5'" A DG 14 ? ? "C4'" A DG 14 ? ? 103.72 109.40 -5.68 0.80 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DG OP3 O N N 37 DG P P N N 38 DG OP1 O N N 39 DG OP2 O N N 40 DG "O5'" O N N 41 DG "C5'" C N N 42 DG "C4'" C N R 43 DG "O4'" O N N 44 DG "C3'" C N S 45 DG "O3'" O N N 46 DG "C2'" C N N 47 DG "C1'" C N R 48 DG N9 N Y N 49 DG C8 C Y N 50 DG N7 N Y N 51 DG C5 C Y N 52 DG C6 C N N 53 DG O6 O N N 54 DG N1 N N N 55 DG C2 C N N 56 DG N2 N N N 57 DG N3 N N N 58 DG C4 C Y N 59 DG HOP3 H N N 60 DG HOP2 H N N 61 DG "H5'" H N N 62 DG "H5''" H N N 63 DG "H4'" H N N 64 DG "H3'" H N N 65 DG "HO3'" H N N 66 DG "H2'" H N N 67 DG "H2''" H N N 68 DG "H1'" H N N 69 DG H8 H N N 70 DG H1 H N N 71 DG H21 H N N 72 DG H22 H N N 73 DT OP3 O N N 74 DT P P N N 75 DT OP1 O N N 76 DT OP2 O N N 77 DT "O5'" O N N 78 DT "C5'" C N N 79 DT "C4'" C N R 80 DT "O4'" O N N 81 DT "C3'" C N S 82 DT "O3'" O N N 83 DT "C2'" C N N 84 DT "C1'" C N R 85 DT N1 N N N 86 DT C2 C N N 87 DT O2 O N N 88 DT N3 N N N 89 DT C4 C N N 90 DT O4 O N N 91 DT C5 C N N 92 DT C7 C N N 93 DT C6 C N N 94 DT HOP3 H N N 95 DT HOP2 H N N 96 DT "H5'" H N N 97 DT "H5''" H N N 98 DT "H4'" H N N 99 DT "H3'" H N N 100 DT "HO3'" H N N 101 DT "H2'" H N N 102 DT "H2''" H N N 103 DT "H1'" H N N 104 DT H3 H N N 105 DT H71 H N N 106 DT H72 H N N 107 DT H73 H N N 108 DT H6 H N N 109 HOH O O N N 110 HOH H1 H N N 111 HOH H2 H N N 112 K K K N N 113 T5E CAD C N N 114 T5E CAA C N N 115 T5E CAB C N N 116 T5E CAC C N N 117 T5E OAE O N N 118 T5E OAF O N N 119 T5E OAG O N N 120 T5E OAH O N N 121 T5E CAI C Y N 122 T5E CAJ C Y N 123 T5E CAK C N N 124 T5E CAL C N N 125 T5E CAM C N N 126 T5E CAN C N N 127 T5E CAO C N N 128 T5E CAP C N N 129 T5E CAQ C N N 130 T5E CAR C N N 131 T5E CAS C N N 132 T5E CAT C N N 133 T5E CAU C N N 134 T5E CAV C N N 135 T5E CAW C N N 136 T5E CAX C N N 137 T5E CAY C N N 138 T5E CAZ C N N 139 T5E CBA C N N 140 T5E CBB C N N 141 T5E CBC C N N 142 T5E CBD C N N 143 T5E CBE C N N 144 T5E CBF C N N 145 T5E CBG C N N 146 T5E CBH C N N 147 T5E CBI C N N 148 T5E CBJ C N N 149 T5E CBK C N N 150 T5E CBL C N N 151 T5E CBM C N N 152 T5E CBN C N N 153 T5E CBO C N N 154 T5E CBP C N N 155 T5E NBQ N N N 156 T5E NBR N N N 157 T5E CBS C Y N 158 T5E CBT C Y N 159 T5E CBU C N N 160 T5E CBV C N N 161 T5E CBW C N N 162 T5E CBX C N N 163 T5E CBY C Y N 164 T5E CBZ C Y N 165 T5E CCA C Y N 166 T5E CCB C Y N 167 T5E CCC C Y N 168 T5E CCD C Y N 169 T5E NCE N N N 170 T5E NCF N N N 171 T5E NCG N N N 172 T5E NCH N N N 173 T5E NCI N N N 174 T5E NCJ N N N 175 T5E NCK N N N 176 T5E NCL N N N 177 T5E NCM N N N 178 T5E NCN N N N 179 T5E HDA H N N 180 T5E HDAA H N N 181 T5E HDAB H N N 182 T5E HAA H N N 183 T5E HAAA H N N 184 T5E HAAB H N N 185 T5E HAB H N N 186 T5E HABA H N N 187 T5E HABB H N N 188 T5E HAC H N N 189 T5E HACA H N N 190 T5E HACB H N N 191 T5E HAI H N N 192 T5E HAJ H N N 193 T5E HAK H N N 194 T5E HAKA H N N 195 T5E HAL H N N 196 T5E HALA H N N 197 T5E HAM H N N 198 T5E HAMA H N N 199 T5E HAN H N N 200 T5E HANA H N N 201 T5E HAO H N N 202 T5E HAOA H N N 203 T5E HAP H N N 204 T5E HAPA H N N 205 T5E HAQ H N N 206 T5E HAQA H N N 207 T5E HAR H N N 208 T5E HARA H N N 209 T5E HAS H N N 210 T5E HASA H N N 211 T5E HAT H N N 212 T5E HATA H N N 213 T5E HAU H N N 214 T5E HAUA H N N 215 T5E HAV H N N 216 T5E HAVA H N N 217 T5E HAW H N N 218 T5E HAWA H N N 219 T5E HAX H N N 220 T5E HAXA H N N 221 T5E HAY H N N 222 T5E HAYA H N N 223 T5E HAZ H N N 224 T5E HAZA H N N 225 T5E HBA H N N 226 T5E HBAA H N N 227 T5E HBB H N N 228 T5E HBBA H N N 229 T5E HBC H N N 230 T5E HBCA H N N 231 T5E HBD H N N 232 T5E HBDA H N N 233 T5E HBE H N N 234 T5E HBEA H N N 235 T5E HBF H N N 236 T5E HBFA H N N 237 T5E HBG H N N 238 T5E HBGA H N N 239 T5E HBH H N N 240 T5E HBHA H N N 241 T5E HBI H N N 242 T5E HBIA H N N 243 T5E HBJ H N N 244 T5E HBJA H N N 245 T5E HBK H N N 246 T5E HBKA H N N 247 T5E HBL H N N 248 T5E HBLA H N N 249 T5E HBM H N N 250 T5E HBMA H N N 251 T5E HBN H N N 252 T5E HBNA H N N 253 T5E HBO H N N 254 T5E HBOA H N N 255 T5E HBP H N N 256 T5E HBPA H N N 257 T5E HNBQ H N N 258 T5E HNBR H N N 259 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DG OP3 P sing N N 39 DG OP3 HOP3 sing N N 40 DG P OP1 doub N N 41 DG P OP2 sing N N 42 DG P "O5'" sing N N 43 DG OP2 HOP2 sing N N 44 DG "O5'" "C5'" sing N N 45 DG "C5'" "C4'" sing N N 46 DG "C5'" "H5'" sing N N 47 DG "C5'" "H5''" sing N N 48 DG "C4'" "O4'" sing N N 49 DG "C4'" "C3'" sing N N 50 DG "C4'" "H4'" sing N N 51 DG "O4'" "C1'" sing N N 52 DG "C3'" "O3'" sing N N 53 DG "C3'" "C2'" sing N N 54 DG "C3'" "H3'" sing N N 55 DG "O3'" "HO3'" sing N N 56 DG "C2'" "C1'" sing N N 57 DG "C2'" "H2'" sing N N 58 DG "C2'" "H2''" sing N N 59 DG "C1'" N9 sing N N 60 DG "C1'" "H1'" sing N N 61 DG N9 C8 sing Y N 62 DG N9 C4 sing Y N 63 DG C8 N7 doub Y N 64 DG C8 H8 sing N N 65 DG N7 C5 sing Y N 66 DG C5 C6 sing N N 67 DG C5 C4 doub Y N 68 DG C6 O6 doub N N 69 DG C6 N1 sing N N 70 DG N1 C2 sing N N 71 DG N1 H1 sing N N 72 DG C2 N2 sing N N 73 DG C2 N3 doub N N 74 DG N2 H21 sing N N 75 DG N2 H22 sing N N 76 DG N3 C4 sing N N 77 DT OP3 P sing N N 78 DT OP3 HOP3 sing N N 79 DT P OP1 doub N N 80 DT P OP2 sing N N 81 DT P "O5'" sing N N 82 DT OP2 HOP2 sing N N 83 DT "O5'" "C5'" sing N N 84 DT "C5'" "C4'" sing N N 85 DT "C5'" "H5'" sing N N 86 DT "C5'" "H5''" sing N N 87 DT "C4'" "O4'" sing N N 88 DT "C4'" "C3'" sing N N 89 DT "C4'" "H4'" sing N N 90 DT "O4'" "C1'" sing N N 91 DT "C3'" "O3'" sing N N 92 DT "C3'" "C2'" sing N N 93 DT "C3'" "H3'" sing N N 94 DT "O3'" "HO3'" sing N N 95 DT "C2'" "C1'" sing N N 96 DT "C2'" "H2'" sing N N 97 DT "C2'" "H2''" sing N N 98 DT "C1'" N1 sing N N 99 DT "C1'" "H1'" sing N N 100 DT N1 C2 sing N N 101 DT N1 C6 sing N N 102 DT C2 O2 doub N N 103 DT C2 N3 sing N N 104 DT N3 C4 sing N N 105 DT N3 H3 sing N N 106 DT C4 O4 doub N N 107 DT C4 C5 sing N N 108 DT C5 C7 sing N N 109 DT C5 C6 doub N N 110 DT C7 H71 sing N N 111 DT C7 H72 sing N N 112 DT C7 H73 sing N N 113 DT C6 H6 sing N N 114 HOH O H1 sing N N 115 HOH O H2 sing N N 116 T5E NCH CAD sing N N 117 T5E CAD HDA sing N N 118 T5E CAD HDAA sing N N 119 T5E CAD HDAB sing N N 120 T5E NCE CAA sing N N 121 T5E CAA HAA sing N N 122 T5E CAA HAAA sing N N 123 T5E CAA HAAB sing N N 124 T5E CAB NCF sing N N 125 T5E CAB HAB sing N N 126 T5E CAB HABA sing N N 127 T5E CAB HABB sing N N 128 T5E NCG CAC sing N N 129 T5E CAC HAC sing N N 130 T5E CAC HACA sing N N 131 T5E CAC HACB sing N N 132 T5E OAE CBU doub N N 133 T5E CBV OAF doub N N 134 T5E CBW OAG doub N N 135 T5E OAH CBX doub N N 136 T5E CAI CBY doub Y N 137 T5E CAI CBT sing Y N 138 T5E CAI HAI sing N N 139 T5E CBS CAJ doub Y N 140 T5E CBZ CAJ sing Y N 141 T5E CAJ HAJ sing N N 142 T5E CAK CAS sing N N 143 T5E CAK CAM sing N N 144 T5E CAK HAK sing N N 145 T5E CAK HAKA sing N N 146 T5E CAN CAL sing N N 147 T5E CAL CAT sing N N 148 T5E CAL HAL sing N N 149 T5E CAL HALA sing N N 150 T5E CAU CAM sing N N 151 T5E CAM HAM sing N N 152 T5E CAM HAMA sing N N 153 T5E CAV CAN sing N N 154 T5E CAN HAN sing N N 155 T5E CAN HANA sing N N 156 T5E CAW CAO sing N N 157 T5E CAO CAQ sing N N 158 T5E CAO HAO sing N N 159 T5E CAO HAOA sing N N 160 T5E CAR CAP sing N N 161 T5E CAP CAX sing N N 162 T5E CAP HAP sing N N 163 T5E CAP HAPA sing N N 164 T5E CAQ CBO sing N N 165 T5E CAQ HAQ sing N N 166 T5E CAQ HAQA sing N N 167 T5E CBP CAR sing N N 168 T5E CAR HAR sing N N 169 T5E CAR HARA sing N N 170 T5E NBQ CAS sing N N 171 T5E CAS HAS sing N N 172 T5E CAS HASA sing N N 173 T5E CAT NBR sing N N 174 T5E CAT HAT sing N N 175 T5E CAT HATA sing N N 176 T5E CAU NCI sing N N 177 T5E CAU HAU sing N N 178 T5E CAU HAUA sing N N 179 T5E NCJ CAV sing N N 180 T5E CAV HAV sing N N 181 T5E CAV HAVA sing N N 182 T5E NCK CAW sing N N 183 T5E CAW HAW sing N N 184 T5E CAW HAWA sing N N 185 T5E CAX NCL sing N N 186 T5E CAX HAX sing N N 187 T5E CAX HAXA sing N N 188 T5E CBG CAY sing N N 189 T5E NCE CAY sing N N 190 T5E CAY HAY sing N N 191 T5E CAY HAYA sing N N 192 T5E CBH CAZ sing N N 193 T5E CAZ NCE sing N N 194 T5E CAZ HAZ sing N N 195 T5E CAZ HAZA sing N N 196 T5E CBA CBI sing N N 197 T5E CBA NCF sing N N 198 T5E CBA HBA sing N N 199 T5E CBA HBAA sing N N 200 T5E NCF CBB sing N N 201 T5E CBB CBJ sing N N 202 T5E CBB HBB sing N N 203 T5E CBB HBBA sing N N 204 T5E NCG CBC sing N N 205 T5E CBK CBC sing N N 206 T5E CBC HBC sing N N 207 T5E CBC HBCA sing N N 208 T5E CBL CBD sing N N 209 T5E CBD NCG sing N N 210 T5E CBD HBD sing N N 211 T5E CBD HBDA sing N N 212 T5E NCH CBE sing N N 213 T5E CBM CBE sing N N 214 T5E CBE HBE sing N N 215 T5E CBE HBEA sing N N 216 T5E CBN CBF sing N N 217 T5E CBF NCH sing N N 218 T5E CBF HBF sing N N 219 T5E CBF HBFA sing N N 220 T5E NCI CBG sing N N 221 T5E CBG HBG sing N N 222 T5E CBG HBGA sing N N 223 T5E CBH NCI sing N N 224 T5E CBH HBH sing N N 225 T5E CBH HBHA sing N N 226 T5E CBI NCJ sing N N 227 T5E CBI HBI sing N N 228 T5E CBI HBIA sing N N 229 T5E NCJ CBJ sing N N 230 T5E CBJ HBJ sing N N 231 T5E CBJ HBJA sing N N 232 T5E NCK CBK sing N N 233 T5E CBK HBK sing N N 234 T5E CBK HBKA sing N N 235 T5E CBL NCK sing N N 236 T5E CBL HBL sing N N 237 T5E CBL HBLA sing N N 238 T5E NCL CBM sing N N 239 T5E CBM HBM sing N N 240 T5E CBM HBMA sing N N 241 T5E CBN NCL sing N N 242 T5E CBN HBN sing N N 243 T5E CBN HBNA sing N N 244 T5E CBO NCM sing N N 245 T5E CBO HBO sing N N 246 T5E CBO HBOA sing N N 247 T5E NCN CBP sing N N 248 T5E CBP HBP sing N N 249 T5E CBP HBPA sing N N 250 T5E CBS NBQ sing N N 251 T5E NBQ HNBQ sing N N 252 T5E NBR CBT sing N N 253 T5E NBR HNBR sing N N 254 T5E CCA CBS sing Y N 255 T5E CBT CCB doub Y N 256 T5E CBU NCM sing N N 257 T5E CBU CBY sing N N 258 T5E CBZ CBV sing N N 259 T5E NCN CBV sing N N 260 T5E NCM CBW sing N N 261 T5E CBW CCA sing N N 262 T5E CCB CBX sing N N 263 T5E CBX NCN sing N N 264 T5E CBY CCC sing Y N 265 T5E CCD CBZ doub Y N 266 T5E CCC CCA doub Y N 267 T5E CCB CCD sing Y N 268 T5E CCC CCD sing Y N 269 # _ndb_struct_conf_na.entry_id 3T5E _ndb_struct_conf_na.feature 'quadruple helix' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;2,7-bis[4-(4-methylpiperazin-1-yl)butyl]-4,9-bis{[4-(4-methylpiperazin-1-yl)butyl]amino}benzo[lmn][3,8]phenanthroline-1 ,3,6,8(2H,7H)-tetrone ; T5E 3 'POTASSIUM ION' K 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1KF1 _pdbx_initial_refinement_model.details 'PDB entry 1KF1' #