HEADER TRANSFERASE 28-JUL-11 3T5Y TITLE CRYSTAL STRUCTURE OF CERJ FROM STREPTOMYCES TENDAE - MALONIC ACID TITLE 2 COVALENTLY LINKED TO THE CATALYTIC CYSTEIN C116 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CERJ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CERJ; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES TENDAE; SOURCE 3 ORGANISM_TAXID: 1932; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: STREPTOMYCES TENDAE; SOURCE 8 ORGANISM_TAXID: 1932; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS THILOASE SUPERFAMILY, FABH-LIKE FOLD, O-MALONYL TRANSFERASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.ZOCHER,T.BRETSCHNEIDER,C.HERTWECK,T.STEHLE REVDAT 4 08-NOV-17 3T5Y 1 REMARK REVDAT 3 01-FEB-12 3T5Y 1 JRNL REVDAT 2 11-JAN-12 3T5Y 1 JRNL REVDAT 1 21-DEC-11 3T5Y 0 JRNL AUTH T.BRETSCHNEIDER,G.ZOCHER,M.UNGER,K.SCHERLACH,T.STEHLE, JRNL AUTH 2 C.HERTWECK JRNL TITL A KETOSYNTHASE HOMOLOG USES MALONYL UNITS TO FORM ESTERS IN JRNL TITL 2 CERVIMYCIN BIOSYNTHESIS. JRNL REF NAT.CHEM.BIOL. V. 8 154 2011 JRNL REFN ISSN 1552-4450 JRNL PMID 22179067 JRNL DOI 10.1038/NCHEMBIO.746 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC - RIGID BODY REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2751 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5036 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 293 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.52000 REMARK 3 B22 (A**2) : 1.52000 REMARK 3 B33 (A**2) : -3.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.207 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.724 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5182 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3380 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7071 ; 1.571 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8183 ; 0.964 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 686 ;12.504 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 216 ;31.818 ;22.593 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 734 ;15.221 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;16.863 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 801 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5971 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1073 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3397 ; 2.019 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1408 ; 0.853 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5371 ; 2.662 ; 4.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1785 ; 2.959 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1697 ; 3.874 ; 5.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 342 REMARK 3 RESIDUE RANGE : A 358 A 359 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3210 6.8124 -26.4083 REMARK 3 T TENSOR REMARK 3 T11: 0.0561 T22: 0.0532 REMARK 3 T33: 0.0465 T12: 0.0412 REMARK 3 T13: 0.0368 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 1.2892 L22: 1.4087 REMARK 3 L33: 1.3269 L12: 0.6601 REMARK 3 L13: 0.4108 L23: -0.2016 REMARK 3 S TENSOR REMARK 3 S11: 0.1011 S12: -0.0744 S13: -0.0246 REMARK 3 S21: 0.0472 S22: -0.0102 S23: 0.0293 REMARK 3 S31: 0.0901 S32: 0.0632 S33: -0.0909 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 342 REMARK 3 RESIDUE RANGE : B 358 B 358 REMARK 3 ORIGIN FOR THE GROUP (A): 28.7358 34.1489 -25.8990 REMARK 3 T TENSOR REMARK 3 T11: 0.1459 T22: 0.0821 REMARK 3 T33: 0.1777 T12: -0.0055 REMARK 3 T13: 0.0679 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.0688 L22: 2.0248 REMARK 3 L33: 1.6455 L12: 0.3084 REMARK 3 L13: 0.1064 L23: -0.0672 REMARK 3 S TENSOR REMARK 3 S11: 0.0203 S12: -0.1396 S13: 0.3556 REMARK 3 S21: 0.1766 S22: -0.0379 S23: 0.0840 REMARK 3 S31: -0.3347 S32: 0.1505 S33: 0.0176 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 360 A 540 REMARK 3 RESIDUE RANGE : B 359 B 470 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2746 16.1431 -32.8774 REMARK 3 T TENSOR REMARK 3 T11: 0.0939 T22: 0.1094 REMARK 3 T33: 0.1176 T12: 0.0408 REMARK 3 T13: 0.0577 T23: 0.0370 REMARK 3 L TENSOR REMARK 3 L11: 0.6820 L22: 1.0801 REMARK 3 L33: 0.5741 L12: 0.6761 REMARK 3 L13: 0.1159 L23: 0.0411 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: 0.0361 S13: 0.0769 REMARK 3 S21: -0.0989 S22: 0.0066 S23: 0.1297 REMARK 3 S31: -0.0103 S32: 0.0447 S33: -0.0216 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3T5Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000067078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DCCM REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39874 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.67400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC - RIGID BODY REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5% PEG 4000, 100 MM TRIS/HCL PH REMARK 280 8.5, 200 MM SODIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.84500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.02000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.02000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.42250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.02000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.02000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.26750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.02000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.02000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.42250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.02000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.02000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 91.26750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.84500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 343 REMARK 465 GLN A 344 REMARK 465 CYS A 345 REMARK 465 MET A 346 REMARK 465 ARG A 347 REMARK 465 GLY A 348 REMARK 465 SER A 349 REMARK 465 ARG A 350 REMARK 465 SER A 351 REMARK 465 HIS A 352 REMARK 465 HIS A 353 REMARK 465 HIS A 354 REMARK 465 HIS A 355 REMARK 465 HIS A 356 REMARK 465 HIS A 357 REMARK 465 ALA B 343 REMARK 465 GLN B 344 REMARK 465 CYS B 345 REMARK 465 MET B 346 REMARK 465 ARG B 347 REMARK 465 GLY B 348 REMARK 465 SER B 349 REMARK 465 ARG B 350 REMARK 465 SER B 351 REMARK 465 HIS B 352 REMARK 465 HIS B 353 REMARK 465 HIS B 354 REMARK 465 HIS B 355 REMARK 465 HIS B 356 REMARK 465 HIS B 357 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 4 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 210 C - N - CD ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG A 291 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 5 55.98 -141.69 REMARK 500 ASP A 70 51.99 39.02 REMARK 500 HIS A 106 47.47 -109.84 REMARK 500 GLN A 114 47.24 -150.54 REMARK 500 ARG A 115 -135.29 33.96 REMARK 500 PRO A 210 124.56 5.41 REMARK 500 GLN B 114 43.66 -143.21 REMARK 500 ARG B 115 -137.89 38.22 REMARK 500 ASP B 190 86.64 -150.51 REMARK 500 PRO B 210 120.15 12.75 REMARK 500 ARG B 267 132.35 -173.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 150 PRO A 151 52.30 REMARK 500 GLU A 209 PRO A 210 -81.75 REMARK 500 GLY A 328 TYR A 329 55.52 REMARK 500 GLY B 150 PRO B 151 49.26 REMARK 500 GLU B 209 PRO B 210 -87.66 REMARK 500 GLY B 328 TYR B 329 62.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 150 10.85 REMARK 500 GLY A 328 14.55 REMARK 500 MCS B 116 -11.00 REMARK 500 GLY B 150 13.07 REMARK 500 GLY B 328 12.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 358 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 358 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S3L RELATED DB: PDB DBREF 3T5Y A 1 357 PDB 3T5Y 3T5Y 1 357 DBREF 3T5Y B 1 357 PDB 3T5Y 3T5Y 1 357 SEQRES 1 A 357 MET ARG TRP GLU ASN LEU PHE VAL SER GLY VAL ALA ALA SEQRES 2 A 357 TRP LEU PRO PRO LEU SER THR ALA GLN ASP ALA VAL MET SEQRES 3 A 357 ALA GLY LEU LEU ASP PRO ALA ARG SER LYS LEU ARG GLY SEQRES 4 A 357 ILE GLU SER VAL THR VAL ALA SER ASP ALA GLU GLU ASP SEQRES 5 A 357 ALA PRO PRO ARG MET ALA ALA ARG ALA ALA ARG ALA ALA SEQRES 6 A 357 LEU GLY ARG GLY ASP VAL ASP PRO ALA ASP VAL SER LEU SEQRES 7 A 357 VAL LEU HIS SER SER LEU TRP PHE GLN GLY ILE ASP LEU SEQRES 8 A 357 TRP PRO ALA ALA SER TYR VAL ALA HIS GLU ALA VAL GLY SEQRES 9 A 357 ARG HIS VAL PRO ALA PHE GLY LEU ALA GLN ARG CYS ASN SEQRES 10 A 357 GLY GLY MET GLY ALA ILE GLU LEU ALA GLY ALA TYR LEU SEQRES 11 A 357 GLY SER GLY ILE GLY ALA GLY HIS ALA ALA LEU LEU THR SEQRES 12 A 357 THR GLY ASP ARG PHE ALA GLY PRO ARG ILE ASP ARG TRP SEQRES 13 A 357 ASN SER VAL ASP VAL THR MET TYR GLY ASP GLY ALA ALA SEQRES 14 A 357 ALA LEU VAL LEU SER THR ARG ASP GLY PHE ALA ARG VAL SEQRES 15 A 357 LEU SER THR ALA THR GLY VAL ASP ASN SER LEU GLU ILE SEQRES 16 A 357 LEU ALA ARG GLY ASP GLU PRO PHE ALA PRO HIS PRO VAL SEQRES 17 A 357 GLU PRO SER PRO VAL ALA ASP LEU GLY THR ARG THR VAL SEQRES 18 A 357 ARG GLY ALA GLU LEU ALA ASP LEU PRO ASP LEU THR HIS SEQRES 19 A 357 ARG TYR ILE ASP LEU LEU VAL ALA ALA LYS THR GLN ALA SEQRES 20 A 357 LEU GLU ASP ALA GLY THR ALA ILE GLU ASP ILE ALA HIS SEQRES 21 A 357 ALA VAL ILE PRO VAL SER ARG ARG GLY THR GLY HIS GLU SEQRES 22 A 357 LEU HIS ASP LEU LEU GLY LEU PRO ASP GLU ARG THR SER SEQRES 23 A 357 TRP ALA TYR GLY ARG THR THR GLY HIS VAL GLY ALA GLY SEQRES 24 A 357 ASP GLN TYR ALA GLY LEU ALA HIS LEU VAL GLU ASN ALA SEQRES 25 A 357 LEU VAL GLN PRO GLY ASP ARG VAL LEU LEU PHE GLY GLY SEQRES 26 A 357 GLY ALA GLY TYR THR CYS THR ALA ALA VAL VAL GLU ILE SEQRES 27 A 357 LEU ARG MET PRO ALA GLN CYS MET ARG GLY SER ARG SER SEQRES 28 A 357 HIS HIS HIS HIS HIS HIS SEQRES 1 B 357 MET ARG TRP GLU ASN LEU PHE VAL SER GLY VAL ALA ALA SEQRES 2 B 357 TRP LEU PRO PRO LEU SER THR ALA GLN ASP ALA VAL MET SEQRES 3 B 357 ALA GLY LEU LEU ASP PRO ALA ARG SER LYS LEU ARG GLY SEQRES 4 B 357 ILE GLU SER VAL THR VAL ALA SER ASP ALA GLU GLU ASP SEQRES 5 B 357 ALA PRO PRO ARG MET ALA ALA ARG ALA ALA ARG ALA ALA SEQRES 6 B 357 LEU GLY ARG GLY ASP VAL ASP PRO ALA ASP VAL SER LEU SEQRES 7 B 357 VAL LEU HIS SER SER LEU TRP PHE GLN GLY ILE ASP LEU SEQRES 8 B 357 TRP PRO ALA ALA SER TYR VAL ALA HIS GLU ALA VAL GLY SEQRES 9 B 357 ARG HIS VAL PRO ALA PHE GLY LEU ALA GLN ARG MCS ASN SEQRES 10 B 357 GLY GLY MET GLY ALA ILE GLU LEU ALA GLY ALA TYR LEU SEQRES 11 B 357 GLY SER GLY ILE GLY ALA GLY HIS ALA ALA LEU LEU THR SEQRES 12 B 357 THR GLY ASP ARG PHE ALA GLY PRO ARG ILE ASP ARG TRP SEQRES 13 B 357 ASN SER VAL ASP VAL THR MET TYR GLY ASP GLY ALA ALA SEQRES 14 B 357 ALA LEU VAL LEU SER THR ARG ASP GLY PHE ALA ARG VAL SEQRES 15 B 357 LEU SER THR ALA THR GLY VAL ASP ASN SER LEU GLU ILE SEQRES 16 B 357 LEU ALA ARG GLY ASP GLU PRO PHE ALA PRO HIS PRO VAL SEQRES 17 B 357 GLU PRO SER PRO VAL ALA ASP LEU GLY THR ARG THR VAL SEQRES 18 B 357 ARG GLY ALA GLU LEU ALA ASP LEU PRO ASP LEU THR HIS SEQRES 19 B 357 ARG TYR ILE ASP LEU LEU VAL ALA ALA LYS THR GLN ALA SEQRES 20 B 357 LEU GLU ASP ALA GLY THR ALA ILE GLU ASP ILE ALA HIS SEQRES 21 B 357 ALA VAL ILE PRO VAL SER ARG ARG GLY THR GLY HIS GLU SEQRES 22 B 357 LEU HIS ASP LEU LEU GLY LEU PRO ASP GLU ARG THR SER SEQRES 23 B 357 TRP ALA TYR GLY ARG THR THR GLY HIS VAL GLY ALA GLY SEQRES 24 B 357 ASP GLN TYR ALA GLY LEU ALA HIS LEU VAL GLU ASN ALA SEQRES 25 B 357 LEU VAL GLN PRO GLY ASP ARG VAL LEU LEU PHE GLY GLY SEQRES 26 B 357 GLY ALA GLY TYR THR CYS THR ALA ALA VAL VAL GLU ILE SEQRES 27 B 357 LEU ARG MET PRO ALA GLN CYS MET ARG GLY SER ARG SER SEQRES 28 B 357 HIS HIS HIS HIS HIS HIS MODRES 3T5Y MCS B 116 CYS MALONYL CYSTEINE HET MCS B 116 12 HET ACT A 358 4 HET ACT A 359 4 HET ACT B 358 4 HETNAM MCS MALONYL CYSTEINE HETNAM ACT ACETATE ION FORMUL 2 MCS C6 H9 N O5 S FORMUL 3 ACT 3(C2 H3 O2 1-) FORMUL 6 HOH *293(H2 O) HELIX 1 1 ALA A 21 ALA A 27 1 7 HELIX 2 2 ASP A 31 GLY A 39 1 9 HELIX 3 3 ALA A 49 ASP A 52 5 4 HELIX 4 4 ALA A 53 GLY A 69 1 17 HELIX 5 5 ASP A 72 ALA A 74 5 3 HELIX 6 6 PRO A 93 VAL A 103 1 11 HELIX 7 7 GLN A 114 CYS A 116 5 3 HELIX 8 8 ASN A 117 SER A 132 1 16 HELIX 9 9 LEU A 193 GLY A 199 1 7 HELIX 10 10 ASP A 215 ASP A 228 1 14 HELIX 11 11 ASP A 231 ALA A 251 1 21 HELIX 12 12 ALA A 254 ILE A 258 5 5 HELIX 13 13 GLU A 273 GLY A 279 1 7 HELIX 14 14 PRO A 281 THR A 285 5 5 HELIX 15 15 SER A 286 GLY A 294 1 9 HELIX 16 16 GLY A 299 ASN A 311 1 13 HELIX 17 17 ALA B 21 ALA B 27 1 7 HELIX 18 18 ASP B 31 GLY B 39 1 9 HELIX 19 19 ALA B 49 ASP B 52 5 4 HELIX 20 20 ALA B 53 GLY B 69 1 17 HELIX 21 21 ASP B 72 ALA B 74 5 3 HELIX 22 22 PRO B 93 VAL B 103 1 11 HELIX 23 23 ASN B 117 SER B 132 1 16 HELIX 24 24 ASN B 191 ARG B 198 5 8 HELIX 25 25 ASP B 215 ASP B 228 1 14 HELIX 26 26 ASP B 231 ALA B 251 1 21 HELIX 27 27 ALA B 254 GLU B 256 5 3 HELIX 28 28 GLU B 273 GLY B 279 1 7 HELIX 29 29 PRO B 281 THR B 285 5 5 HELIX 30 30 SER B 286 GLY B 294 1 9 HELIX 31 31 GLY B 299 ASN B 311 1 13 SHEET 1 A18 HIS A 260 VAL A 262 0 SHEET 2 A18 ARG A 319 PHE A 323 1 O LEU A 321 N VAL A 262 SHEET 3 A18 THR A 330 ILE A 338 -1 O VAL A 336 N VAL A 320 SHEET 4 A18 ALA A 180 VAL A 189 -1 N ALA A 186 O ALA A 333 SHEET 5 A18 PHE A 7 TRP A 14 -1 N VAL A 8 O ALA A 180 SHEET 6 A18 GLY A 167 SER A 174 -1 O ALA A 168 N TRP A 14 SHEET 7 A18 ALA A 139 ASP A 146 -1 N LEU A 142 O LEU A 171 SHEET 8 A18 VAL A 76 SER A 82 1 N SER A 82 O THR A 143 SHEET 9 A18 ALA A 109 ALA A 113 1 O LEU A 112 N HIS A 81 SHEET 10 A18 ALA B 109 ALA B 113 -1 O ALA B 113 N GLY A 111 SHEET 11 A18 VAL B 76 SER B 82 1 N VAL B 79 O PHE B 110 SHEET 12 A18 ALA B 139 ASP B 146 1 O THR B 143 N LEU B 80 SHEET 13 A18 GLY B 167 SER B 174 -1 O LEU B 171 N LEU B 142 SHEET 14 A18 PHE B 7 TRP B 14 -1 N PHE B 7 O SER B 174 SHEET 15 A18 ALA B 180 VAL B 189 -1 O ALA B 180 N VAL B 8 SHEET 16 A18 THR B 330 ILE B 338 -1 O GLU B 337 N ARG B 181 SHEET 17 A18 ARG B 319 PHE B 323 -1 N LEU B 322 O ALA B 334 SHEET 18 A18 ILE B 258 VAL B 262 1 N VAL B 262 O PHE B 323 SHEET 1 B 2 LEU A 18 THR A 20 0 SHEET 2 B 2 SER A 42 THR A 44 -1 O VAL A 43 N SER A 19 SHEET 1 C 2 LEU B 18 THR B 20 0 SHEET 2 C 2 SER B 42 THR B 44 -1 O VAL B 43 N SER B 19 LINK C ARG B 115 N MCS B 116 1555 1555 1.32 LINK N ASN B 117 C MCS B 116 1555 1555 1.36 SITE 1 AC1 6 LEU A 84 ARG A 115 CYS A 116 TYR A 164 SITE 2 AC1 6 HOH A 432 HOH A 522 SITE 1 AC2 4 MET A 1 TRP A 3 GLU A 4 ASN A 5 SITE 1 AC3 3 TRP B 3 GLU B 4 ASN B 5 CRYST1 106.040 106.040 121.690 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009430 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008218 0.00000