HEADER TRANSPORT PROTEIN 28-JUL-11 3T66 TITLE CRYSTAL STRUCTURE OF NICKEL ABC TRANSPORTER FROM BACILLUS HALODURANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICKEL ABC TRANSPORTER (NICKEL-BINDING PROTEIN); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NICKEL ABC TRANSPORTER; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS; SOURCE 3 ORGANISM_TAXID: 272558; SOURCE 4 STRAIN: C-125; SOURCE 5 GENE: BH1796; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, PERIPLASMIC PROTEIN, NICKEL ABC KEYWDS 3 TRANSPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.AGARWAL,J.B.BONANNO,S.CHAMALA,B.EVANS,R.FOTI,A.GIZZI,B.HILLERICH, AUTHOR 2 A.KAR,J.LAFLEUR,R.SEIDEL,G.VILLIGAS,W.ZENCHECK,S.C.ALMO, AUTHOR 3 S.SWAMINATHAN,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM AUTHOR 4 (NYSGRC) REVDAT 2 13-SEP-23 3T66 1 REMARK SEQADV REVDAT 1 17-AUG-11 3T66 0 JRNL AUTH R.AGARWAL,J.B.BONANNO,S.C.ALMO,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF NICKEL ABC TRANSPORTER FROM BACILLUS JRNL TITL 2 HALODURANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 16232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 864 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1089 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.3470 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.4410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3481 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.778 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.363 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.284 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.638 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3556 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4873 ; 1.863 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 473 ; 7.752 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;40.151 ;24.679 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 472 ;19.315 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;21.980 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 564 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2789 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2369 ; 0.754 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3734 ; 1.452 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1187 ; 2.096 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1139 ; 3.581 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3T66 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067086. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : SI-III REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16232 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 19.60 REMARK 200 R MERGE FOR SHELL (I) : 0.42800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3RQT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CACL2,0.1M HEPES, 28%PEG 400, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.53300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.53300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 62.02350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.56350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 62.02350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.56350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.53300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 62.02350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.56350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.53300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 62.02350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.56350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLN A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 ASN A 7 REMARK 465 GLU A 8 REMARK 465 GLY A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 321 REMARK 465 ASN A 488 REMARK 465 ALA A 489 REMARK 465 GLU A 490 REMARK 465 ASN A 491 REMARK 465 LEU A 492 REMARK 465 TYR A 493 REMARK 465 PHE A 494 REMARK 465 GLN A 495 REMARK 465 SER A 496 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 SER A 22 OG REMARK 470 VAL A 30 CG1 CG2 REMARK 470 ASP A 31 CG OD1 OD2 REMARK 470 GLU A 50 CG CD OE1 OE2 REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 ASP A 64 CG OD1 OD2 REMARK 470 THR A 66 OG1 CG2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 ASP A 118 CG OD1 OD2 REMARK 470 THR A 121 OG1 CG2 REMARK 470 ILE A 145 CG1 CG2 CD1 REMARK 470 THR A 148 OG1 CG2 REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 470 VAL A 176 CG1 CG2 REMARK 470 VAL A 214 CG1 CG2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 SER A 221 OG REMARK 470 ILE A 222 CG1 CG2 CD1 REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 THR A 224 OG1 CG2 REMARK 470 GLU A 229 CG CD OE1 OE2 REMARK 470 THR A 238 OG1 CG2 REMARK 470 SER A 252 OG REMARK 470 VAL A 256 CG1 CG2 REMARK 470 VAL A 264 CG1 CG2 REMARK 470 LEU A 265 CG CD1 CD2 REMARK 470 THR A 274 OG1 CG2 REMARK 470 TYR A 279 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 281 CG CD OE1 OE2 REMARK 470 SER A 296 OG REMARK 470 GLU A 298 CG CD OE1 OE2 REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 THR A 302 OG1 CG2 REMARK 470 THR A 304 OG1 CG2 REMARK 470 ASP A 305 CG OD1 OD2 REMARK 470 ILE A 308 CG1 CG2 CD1 REMARK 470 LEU A 311 CG CD1 CD2 REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 GLU A 313 CG CD OE1 OE2 REMARK 470 THR A 317 OG1 CG2 REMARK 470 LEU A 318 CG CD1 CD2 REMARK 470 ASN A 320 CG OD1 ND2 REMARK 470 GLN A 322 CG CD OE1 NE2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 ASP A 326 CG OD1 OD2 REMARK 470 GLU A 328 CG CD OE1 OE2 REMARK 470 THR A 333 OG1 CG2 REMARK 470 VAL A 334 CG1 CG2 REMARK 470 SER A 339 OG REMARK 470 ILE A 346 CG1 CG2 CD1 REMARK 470 GLN A 348 CG CD OE1 NE2 REMARK 470 SER A 352 OG REMARK 470 LYS A 355 CG CD CE NZ REMARK 470 GLN A 356 CG CD OE1 NE2 REMARK 470 ILE A 357 CG1 CG2 CD1 REMARK 470 GLU A 360 CG CD OE1 OE2 REMARK 470 VAL A 361 CG1 CG2 REMARK 470 GLU A 362 CG CD OE1 OE2 REMARK 470 ILE A 363 CG1 CG2 CD1 REMARK 470 ARG A 364 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 365 CG CD OE1 NE2 REMARK 470 ILE A 366 CG1 CG2 CD1 REMARK 470 GLU A 367 CG CD OE1 OE2 REMARK 470 VAL A 368 CG1 CG2 REMARK 470 PRO A 369 CG CD REMARK 470 GLU A 370 CB CG CD OE1 OE2 REMARK 470 TYR A 372 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET A 373 CG SD CE REMARK 470 SER A 375 OG REMARK 470 ASN A 376 CB CG OD1 ND2 REMARK 470 ARG A 377 CB CG CD NE CZ NH1 NH2 REMARK 470 THR A 383 OG1 CG2 REMARK 470 THR A 405 OG1 CG2 REMARK 470 SER A 412 OG REMARK 470 GLU A 424 CG CD OE1 OE2 REMARK 470 ARG A 427 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 431 CG CD OE1 NE2 REMARK 470 LYS A 436 CG CD CE NZ REMARK 470 GLU A 447 CG CD OE1 OE2 REMARK 470 GLU A 465 CG CD OE1 OE2 REMARK 470 LYS A 469 CG CD CE NZ REMARK 470 VAL A 472 CG1 CG2 REMARK 470 ASP A 486 CG OD1 OD2 REMARK 470 VAL A 487 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 32 -2.54 77.30 REMARK 500 TRP A 58 -89.48 -125.18 REMARK 500 HIS A 155 70.71 -160.32 REMARK 500 SER A 171 -75.03 -124.97 REMARK 500 ARG A 260 -34.84 -38.23 REMARK 500 ILE A 275 -51.49 -122.62 REMARK 500 TYR A 279 47.23 -71.07 REMARK 500 THR A 302 97.94 -161.12 REMARK 500 ASP A 326 -132.70 58.12 REMARK 500 SER A 339 -34.20 -35.61 REMARK 500 VAL A 368 162.84 89.57 REMARK 500 ASN A 376 -121.20 42.57 REMARK 500 ARG A 377 -95.62 20.76 REMARK 500 THR A 383 94.10 -64.89 REMARK 500 ASN A 414 80.31 -157.08 REMARK 500 LYS A 449 55.89 37.21 REMARK 500 LEU A 454 -78.32 -89.40 REMARK 500 MET A 480 -67.26 -139.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 497 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-000813 RELATED DB: TARGETDB DBREF 3T66 A 3 488 UNP Q9KBX8 Q9KBX8_BACHD 43 528 SEQADV 3T66 MET A 1 UNP Q9KBX8 EXPRESSION TAG SEQADV 3T66 VAL A 2 UNP Q9KBX8 EXPRESSION TAG SEQADV 3T66 ALA A 489 UNP Q9KBX8 EXPRESSION TAG SEQADV 3T66 GLU A 490 UNP Q9KBX8 EXPRESSION TAG SEQADV 3T66 ASN A 491 UNP Q9KBX8 EXPRESSION TAG SEQADV 3T66 LEU A 492 UNP Q9KBX8 EXPRESSION TAG SEQADV 3T66 TYR A 493 UNP Q9KBX8 EXPRESSION TAG SEQADV 3T66 PHE A 494 UNP Q9KBX8 EXPRESSION TAG SEQADV 3T66 GLN A 495 UNP Q9KBX8 EXPRESSION TAG SEQADV 3T66 SER A 496 UNP Q9KBX8 EXPRESSION TAG SEQRES 1 A 496 MET VAL GLN SER SER SER ASN GLU GLY ALA GLY GLU LYS SEQRES 2 A 496 HIS ILE HIS PHE LEU PHE ASN VAL SER THR ASN SER LEU SEQRES 3 A 496 ASP PRO HIS VAL ASP MET THR TYR ILE PRO VAL ARG ALA SEQRES 4 A 496 GLY ILE THR GLU THR LEU VAL ARG VAL ASP GLU GLU ASN SEQRES 5 A 496 VAL THR ILE ALA PRO TRP LEU ALA GLU SER TRP ASP SER SEQRES 6 A 496 THR ASP GLY GLN HIS TRP THR ILE LYS LEU ARG GLU ASP SEQRES 7 A 496 VAL THR PHE GLN ASN GLY LYS GLU MET ASP ALA GLU ALA SEQRES 8 A 496 VAL LYS ALA SER LEU GLU ARG ALA LEU ASP GLU SER VAL SEQRES 9 A 496 ALA ILE GLU ASN ALA LEU LYS ILE ASP GLU ILE GLU ALA SEQRES 10 A 496 ASP GLY TYR THR LEU HIS ILE THR THR LYS GLU PRO PHE SEQRES 11 A 496 PRO GLU PHE ILE SER GLU LEU VAL ASN PRO ASN VAL SER SEQRES 12 A 496 ILE ILE ASP VAL THR GLU GLU ASP PHE THR ASN HIS PRO SEQRES 13 A 496 VAL GLY THR GLY PRO PHE ALA LEU GLU SER PHE THR PRO SEQRES 14 A 496 GLY SER LYS LEU GLU LEU VAL ARG TYR ASP GLU TYR TRP SEQRES 15 A 496 ASP GLY ALA SER LYS LEU ASP SER VAL THR PHE SER PHE SEQRES 16 A 496 ASN GLU ASP ALA SER ALA ARG SER LEU ALA LEU GLU SER SEQRES 17 A 496 GLY GLN ALA ASP ILE VAL TYR ARG PRO GLU VAL GLU SER SEQRES 18 A 496 ILE GLU THR LEU GLN ALA ASN GLU GLY ILE MET VAL GLU SEQRES 19 A 496 ALA THR GLU THR PHE ARG THR HIS ASN LEU THR MET ASN SEQRES 20 A 496 LEU ASP ARG ASP SER LEU LYS ASP VAL ASN VAL ARG ARG SEQRES 21 A 496 ALA VAL ASP VAL LEU LEU ASP ARG GLN GLU ILE VAL ASP SEQRES 22 A 496 THR ILE MET LEU GLY TYR ALA GLU VAL ALA ASP GLY PRO SEQRES 23 A 496 PHE ILE PRO THR LEU PRO PHE ALA PRO SER TYR GLU LYS SEQRES 24 A 496 LYS GLU THR GLY THR ASP ILE ALA ILE GLN TYR LEU GLU SEQRES 25 A 496 GLU ALA GLY TYR THR LEU GLU ASN GLY GLN MET GLN LYS SEQRES 26 A 496 ASP GLY GLU PRO LEU HIS PHE THR VAL LEU THR TYR GLY SEQRES 27 A 496 SER ARG ALA GLU LEU PRO LEU ILE ALA GLN VAL PHE GLN SEQRES 28 A 496 SER ASN ALA LYS GLN ILE GLY ILE GLU VAL GLU ILE ARG SEQRES 29 A 496 GLN ILE GLU VAL PRO GLU GLU TYR MET ALA SER ASN ARG SEQRES 30 A 496 ASP TRP ASP LEU ILE THR TYR SER ASN VAL THR SER PRO SEQRES 31 A 496 ARG GLY ASP ALA GLY TYR TYR LEU ASN ALA THR TYR HIS SEQRES 32 A 496 PRO THR GLY ALA LEU ASN PHE SER SER VAL ASN ASP PRO SEQRES 33 A 496 GLU LEU THR GLY ILE ILE ASP GLU LEU ASN ARG THR VAL SEQRES 34 A 496 ASP GLN ASP VAL ARG ALA LYS LEU THR GLU GLN ALA ALA SEQRES 35 A 496 ALA TYR ILE ASP GLU GLN LYS ILE HIS SER PHE LEU ILE SEQRES 36 A 496 HIS PRO SER ALA VAL VAL ALA TYR ASP GLU ASN LYS VAL SEQRES 37 A 496 LYS ASN TRP VAL THR THR ARG SER GLU TYR TYR MET ILE SEQRES 38 A 496 THR ASN GLN LEU ASP VAL ASN ALA GLU ASN LEU TYR PHE SEQRES 39 A 496 GLN SER HET CA A 497 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *9(H2 O) HELIX 1 1 TYR A 34 ALA A 39 1 6 HELIX 2 2 ASP A 88 ASP A 101 1 14 HELIX 3 3 SER A 103 LYS A 111 1 9 HELIX 4 4 PHE A 133 SER A 143 5 11 HELIX 5 5 ASP A 198 SER A 208 1 11 HELIX 6 6 SER A 221 ASN A 228 1 8 HELIX 7 7 ASP A 251 LYS A 254 5 4 HELIX 8 8 ASP A 255 LEU A 266 1 12 HELIX 9 9 ASP A 267 ILE A 275 1 9 HELIX 10 10 GLY A 303 GLY A 315 1 13 HELIX 11 11 GLU A 342 ILE A 357 1 16 HELIX 12 12 GLU A 370 SER A 375 1 6 HELIX 13 13 ALA A 394 HIS A 403 1 10 HELIX 14 14 ASP A 415 ARG A 427 1 13 HELIX 15 15 ASP A 430 GLN A 448 1 19 SHEET 1 A 7 PHE A 162 THR A 168 0 SHEET 2 A 7 LYS A 172 ARG A 177 -1 O GLU A 174 N GLU A 165 SHEET 3 A 7 SER A 190 PHE A 195 -1 O VAL A 191 N LEU A 175 SHEET 4 A 7 HIS A 14 PHE A 19 1 N PHE A 19 O SER A 194 SHEET 5 A 7 ILE A 213 TYR A 215 1 O TYR A 215 N LEU A 18 SHEET 6 A 7 HIS A 451 ASP A 464 -1 O ALA A 462 N VAL A 214 SHEET 7 A 7 ALA A 280 VAL A 282 -1 N GLU A 281 O HIS A 456 SHEET 1 B 6 ILE A 231 GLU A 237 0 SHEET 2 B 6 HIS A 451 ASP A 464 -1 O ALA A 459 N THR A 236 SHEET 3 B 6 ARG A 240 MET A 246 -1 N HIS A 242 O ILE A 455 SHEET 4 B 6 LEU A 381 VAL A 387 -1 O ASN A 386 N THR A 241 SHEET 5 B 6 HIS A 331 THR A 336 1 N LEU A 335 O LEU A 381 SHEET 6 B 6 GLU A 360 GLN A 365 1 O GLU A 360 N PHE A 332 SHEET 1 C 2 VAL A 46 VAL A 48 0 SHEET 2 C 2 ILE A 55 PRO A 57 -1 O ALA A 56 N ARG A 47 SHEET 1 D 4 ALA A 60 ASP A 64 0 SHEET 2 D 4 HIS A 70 LEU A 75 -1 O THR A 72 N ASP A 64 SHEET 3 D 4 THR A 121 THR A 126 -1 O ILE A 124 N TRP A 71 SHEET 4 D 4 ILE A 112 ASP A 118 -1 N GLU A 116 O HIS A 123 SHEET 1 E 3 THR A 317 LEU A 318 0 SHEET 2 E 3 MET A 323 LYS A 325 -1 O GLN A 324 N THR A 317 SHEET 3 E 3 GLU A 328 PRO A 329 -1 O GLU A 328 N LYS A 325 LINK OD2 ASP A 179 CA CA A 497 1555 1555 2.41 SITE 1 AC1 2 GLU A 128 ASP A 179 CRYST1 124.047 147.127 75.066 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008061 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013322 0.00000