HEADER IMMUNE SYSTEM 28-JUL-11 3T6Q TITLE CRYSTAL STRUCTURE OF MOUSE RP105/MD-1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD180 ANTIGEN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 21-626; COMPND 5 SYNONYM: LYMPHOCYTE ANTIGEN 78, LY-78, RADIOPROTECTIVE 105 KDA COMPND 6 PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: LYMPHOCYTE ANTIGEN 86; COMPND 10 CHAIN: C, D; COMPND 11 SYNONYM: LY-86, PROTEIN MD-1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CD180, LY78, RP105; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7215; SOURCE 8 EXPRESSION_SYSTEM_CELL: S2; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 GENE: LY86, MD1; SOURCE 14 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7215; SOURCE 16 EXPRESSION_SYSTEM_CELL: S2 KEYWDS PROTEIN-PROTEIN COMPLEX, LEUCINE RICH REPEAT, MD-2 RELATED LIPID KEYWDS 2 RECOGNITION, RECEPTOR, INNATE IMMUNITY, GLYCOSYLATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR U.OHTO,T.SHIMIZU REVDAT 2 29-JUL-20 3T6Q 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 09-NOV-11 3T6Q 0 JRNL AUTH U.OHTO,K.MIYAKE,T.SHIMIZU JRNL TITL CRYSTAL STRUCTURES OF MOUSE AND HUMAN RP105/MD-1 COMPLEXES JRNL TITL 2 REVEAL UNIQUE DIMER ORGANIZATION OF THE TOLL-LIKE RECEPTOR JRNL TITL 3 FAMILY. JRNL REF J.MOL.BIOL. V. 413 815 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21959264 JRNL DOI 10.1016/J.JMB.2011.09.020 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 155202 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8204 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10783 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 536 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 11658 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 556 REMARK 3 SOLVENT ATOMS : 1149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.256 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12704 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 17281 ; 1.622 ; 2.018 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1527 ; 6.238 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 566 ;40.039 ;25.830 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2167 ;16.170 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;19.833 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 2075 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9338 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 626 REMARK 3 ORIGIN FOR THE GROUP (A): 34.5952 -9.1358 -1.7282 REMARK 3 T TENSOR REMARK 3 T11: 0.0162 T22: 0.0308 REMARK 3 T33: 0.0077 T12: -0.0017 REMARK 3 T13: 0.0081 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.0405 L22: 0.0651 REMARK 3 L33: 0.0690 L12: 0.0137 REMARK 3 L13: 0.0297 L23: 0.0213 REMARK 3 S TENSOR REMARK 3 S11: -0.0074 S12: -0.0075 S13: 0.0009 REMARK 3 S21: 0.0043 S22: -0.0019 S23: 0.0078 REMARK 3 S31: 0.0119 S32: 0.0060 S33: 0.0092 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 26 C 164 REMARK 3 ORIGIN FOR THE GROUP (A): 43.2616 -4.3722 -24.1359 REMARK 3 T TENSOR REMARK 3 T11: 0.0305 T22: 0.0334 REMARK 3 T33: 0.0149 T12: -0.0104 REMARK 3 T13: 0.0068 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.1234 L22: 0.1418 REMARK 3 L33: 0.2588 L12: -0.0158 REMARK 3 L13: 0.0210 L23: 0.1168 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: -0.0204 S13: 0.0221 REMARK 3 S21: -0.0443 S22: 0.0297 S23: -0.0065 REMARK 3 S31: -0.0252 S32: 0.0450 S33: -0.0188 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 626 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2406 -40.4882 -55.8968 REMARK 3 T TENSOR REMARK 3 T11: 0.0155 T22: 0.0259 REMARK 3 T33: 0.0087 T12: 0.0112 REMARK 3 T13: -0.0003 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.0228 L22: 0.1561 REMARK 3 L33: 0.1512 L12: 0.0009 REMARK 3 L13: -0.0207 L23: 0.0839 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: 0.0107 S13: -0.0058 REMARK 3 S21: -0.0004 S22: -0.0344 S23: 0.0272 REMARK 3 S31: -0.0174 S32: -0.0276 S33: 0.0183 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 26 D 164 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2138 -50.2285 -33.4735 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.0253 REMARK 3 T33: 0.0150 T12: -0.0111 REMARK 3 T13: 0.0147 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.2107 L22: 0.0796 REMARK 3 L33: 0.3291 L12: 0.0444 REMARK 3 L13: 0.0390 L23: 0.0209 REMARK 3 S TENSOR REMARK 3 S11: 0.0409 S12: 0.0208 S13: -0.0285 REMARK 3 S21: 0.0382 S22: -0.0390 S23: 0.0138 REMARK 3 S31: 0.0586 S32: -0.0011 S33: -0.0019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3T6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 155204 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 115.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% (W/V) PEG 8000, 100MM TRIS HCL (PH REMARK 280 9.0), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 71.87650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 96.39500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 71.87650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 96.39500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D, E, F, G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CU CU A 1 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 21 REMARK 465 THR A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 ASP A 25 REMARK 465 ASP C 20 REMARK 465 HIS C 21 REMARK 465 GLY C 22 REMARK 465 SER C 23 REMARK 465 GLU C 24 REMARK 465 ASN C 25 REMARK 465 THR B 21 REMARK 465 THR B 22 REMARK 465 SER B 23 REMARK 465 SER B 24 REMARK 465 ASP B 25 REMARK 465 ASP D 20 REMARK 465 HIS D 21 REMARK 465 GLY D 22 REMARK 465 SER D 23 REMARK 465 GLU D 24 REMARK 465 ASN D 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 678 O HOH B 1134 2.14 REMARK 500 OE1 GLN A 493 O HOH A 1123 2.18 REMARK 500 ND2 ASN D 156 O5 NAG D 202 2.18 REMARK 500 O HOH C 1035 O HOH B 1036 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 186 CG HIS A 186 CD2 0.061 REMARK 500 HIS B 186 CG HIS B 186 CD2 0.058 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 358 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 358 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 531 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 570 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG C 75 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG C 75 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU C 95 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 ARG B 86 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 86 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 570 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 570 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG D 75 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG D 75 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 34 -1.68 66.25 REMARK 500 ASN A 63 -158.22 -106.88 REMARK 500 GLN A 100 56.00 -94.72 REMARK 500 ASN A 159 -158.37 -114.53 REMARK 500 ASN A 183 -164.48 -128.67 REMARK 500 SER A 221 12.36 59.24 REMARK 500 LYS A 243 130.30 -38.20 REMARK 500 ASN A 244 -0.96 78.67 REMARK 500 THR A 254 -168.93 -122.09 REMARK 500 LYS A 283 -0.36 71.21 REMARK 500 PHE A 287 129.08 -10.53 REMARK 500 ASN A 331 -161.26 -100.33 REMARK 500 ASP A 386 97.76 -160.21 REMARK 500 LEU A 444 65.51 -104.85 REMARK 500 LEU A 468 58.21 -117.98 REMARK 500 ASN A 530 -156.11 -127.09 REMARK 500 ASN A 553 -155.86 -125.13 REMARK 500 CYS A 581 50.45 -113.35 REMARK 500 CYS C 33 126.05 -174.82 REMARK 500 ASN C 34 88.47 -155.60 REMARK 500 GLN C 106 88.89 -166.70 REMARK 500 ASN B 34 13.17 56.30 REMARK 500 LYS B 35 -46.04 -131.14 REMARK 500 ASN B 63 -166.55 -106.29 REMARK 500 ALA B 110 33.75 71.83 REMARK 500 ASN B 159 -156.40 -111.33 REMARK 500 ASN B 183 -163.11 -126.25 REMARK 500 GLN B 225 -83.60 -75.95 REMARK 500 ASN B 244 -7.81 83.37 REMARK 500 THR B 254 -168.61 -123.18 REMARK 500 ASN B 331 -161.18 -102.95 REMARK 500 LYS B 332 44.29 -141.00 REMARK 500 LEU B 369 77.64 -69.52 REMARK 500 ASP B 436 137.10 -31.06 REMARK 500 ALA B 437 12.89 51.76 REMARK 500 ASN B 553 -158.22 -129.36 REMARK 500 SER B 556 -68.21 -121.43 REMARK 500 CYS B 581 43.27 -109.22 REMARK 500 ASN D 34 80.50 -152.48 REMARK 500 GLN D 106 85.67 -164.24 REMARK 500 ASN D 127 47.29 -89.48 REMARK 500 LEU D 131 135.15 177.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 1 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 269 OE2 REMARK 620 2 HIS A 295 NE2 104.3 REMARK 620 N 1 DBREF 3T6Q A 21 626 UNP Q62192 CD180_MOUSE 21 626 DBREF 3T6Q C 20 162 UNP O88188 LY86_MOUSE 20 162 DBREF 3T6Q B 21 626 UNP Q62192 CD180_MOUSE 21 626 DBREF 3T6Q D 20 162 UNP O88188 LY86_MOUSE 20 162 SEQADV 3T6Q GLU C 163 UNP O88188 EXPRESSION TAG SEQADV 3T6Q PHE C 164 UNP O88188 EXPRESSION TAG SEQADV 3T6Q GLU D 163 UNP O88188 EXPRESSION TAG SEQADV 3T6Q PHE D 164 UNP O88188 EXPRESSION TAG SEQRES 1 A 606 THR THR SER SER ASP GLN LYS CYS ILE GLU LYS GLU VAL SEQRES 2 A 606 ASN LYS THR TYR ASN CYS GLU ASN LEU GLY LEU ASN GLU SEQRES 3 A 606 ILE PRO GLY THR LEU PRO ASN SER THR GLU CYS LEU GLU SEQRES 4 A 606 PHE SER PHE ASN VAL LEU PRO THR ILE GLN ASN THR THR SEQRES 5 A 606 PHE SER ARG LEU ILE ASN LEU THR PHE LEU ASP LEU THR SEQRES 6 A 606 ARG CYS GLN ILE TYR TRP ILE HIS GLU ASP THR PHE GLN SEQRES 7 A 606 SER GLN HIS ARG LEU ASP THR LEU VAL LEU THR ALA ASN SEQRES 8 A 606 PRO LEU ILE PHE MET ALA GLU THR ALA LEU SER GLY PRO SEQRES 9 A 606 LYS ALA LEU LYS HIS LEU PHE PHE ILE GLN THR GLY ILE SEQRES 10 A 606 SER SER ILE ASP PHE ILE PRO LEU HIS ASN GLN LYS THR SEQRES 11 A 606 LEU GLU SER LEU TYR LEU GLY SER ASN HIS ILE SER SER SEQRES 12 A 606 ILE LYS LEU PRO LYS GLY PHE PRO THR GLU LYS LEU LYS SEQRES 13 A 606 VAL LEU ASP PHE GLN ASN ASN ALA ILE HIS TYR LEU SER SEQRES 14 A 606 LYS GLU ASP MET SER SER LEU GLN GLN ALA THR ASN LEU SEQRES 15 A 606 SER LEU ASN LEU ASN GLY ASN ASP ILE ALA GLY ILE GLU SEQRES 16 A 606 PRO GLY ALA PHE ASP SER ALA VAL PHE GLN SER LEU ASN SEQRES 17 A 606 PHE GLY GLY THR GLN ASN LEU LEU VAL ILE PHE LYS GLY SEQRES 18 A 606 LEU LYS ASN SER THR ILE GLN SER LEU TRP LEU GLY THR SEQRES 19 A 606 PHE GLU ASP MET ASP ASP GLU ASP ILE SER PRO ALA VAL SEQRES 20 A 606 PHE GLU GLY LEU CYS GLU MET SER VAL GLU SER ILE ASN SEQRES 21 A 606 LEU GLN LYS HIS TYR PHE PHE ASN ILE SER SER ASN THR SEQRES 22 A 606 PHE HIS CYS PHE SER GLY LEU GLN GLU LEU ASP LEU THR SEQRES 23 A 606 ALA THR HIS LEU SER GLU LEU PRO SER GLY LEU VAL GLY SEQRES 24 A 606 LEU SER THR LEU LYS LYS LEU VAL LEU SER ALA ASN LYS SEQRES 25 A 606 PHE GLU ASN LEU CYS GLN ILE SER ALA SER ASN PHE PRO SEQRES 26 A 606 SER LEU THR HIS LEU SER ILE LYS GLY ASN THR LYS ARG SEQRES 27 A 606 LEU GLU LEU GLY THR GLY CYS LEU GLU ASN LEU GLU ASN SEQRES 28 A 606 LEU ARG GLU LEU ASP LEU SER HIS ASP ASP ILE GLU THR SEQRES 29 A 606 SER ASP CYS CYS ASN LEU GLN LEU ARG ASN LEU SER HIS SEQRES 30 A 606 LEU GLN SER LEU ASN LEU SER TYR ASN GLU PRO LEU SER SEQRES 31 A 606 LEU LYS THR GLU ALA PHE LYS GLU CYS PRO GLN LEU GLU SEQRES 32 A 606 LEU LEU ASP LEU ALA PHE THR ARG LEU LYS VAL LYS ASP SEQRES 33 A 606 ALA GLN SER PRO PHE GLN ASN LEU HIS LEU LEU LYS VAL SEQRES 34 A 606 LEU ASN LEU SER HIS SER LEU LEU ASP ILE SER SER GLU SEQRES 35 A 606 GLN LEU PHE ASP GLY LEU PRO ALA LEU GLN HIS LEU ASN SEQRES 36 A 606 LEU GLN GLY ASN HIS PHE PRO LYS GLY ASN ILE GLN LYS SEQRES 37 A 606 THR ASN SER LEU GLN THR LEU GLY ARG LEU GLU ILE LEU SEQRES 38 A 606 VAL LEU SER PHE CYS ASP LEU SER SER ILE ASP GLN HIS SEQRES 39 A 606 ALA PHE THR SER LEU LYS MET MET ASN HIS VAL ASP LEU SEQRES 40 A 606 SER HIS ASN ARG LEU THR SER SER SER ILE GLU ALA LEU SEQRES 41 A 606 SER HIS LEU LYS GLY ILE TYR LEU ASN LEU ALA SER ASN SEQRES 42 A 606 HIS ILE SER ILE ILE LEU PRO SER LEU LEU PRO ILE LEU SEQRES 43 A 606 SER GLN GLN ARG THR ILE ASN LEU ARG GLN ASN PRO LEU SEQRES 44 A 606 ASP CYS THR CYS SER ASN ILE TYR PHE LEU GLU TRP TYR SEQRES 45 A 606 LYS GLU ASN MET GLN LYS LEU GLU ASP THR GLU ASP THR SEQRES 46 A 606 LEU CYS GLU ASN PRO PRO LEU LEU ARG GLY VAL ARG LEU SEQRES 47 A 606 SER ASP VAL THR LEU SER CYS SER SEQRES 1 C 145 ASP HIS GLY SER GLU ASN GLY TRP PRO LYS HIS THR ALA SEQRES 2 C 145 CYS ASN SER GLY GLY LEU GLU VAL VAL TYR GLN SER CYS SEQRES 3 C 145 ASP PRO LEU GLN ASP PHE GLY LEU SER ILE ASP GLN CYS SEQRES 4 C 145 SER LYS GLN ILE GLN SER ASN LEU ASN ILE ARG PHE GLY SEQRES 5 C 145 ILE ILE LEU ARG GLN ASP ILE ARG LYS LEU PHE LEU ASP SEQRES 6 C 145 ILE THR LEU MET ALA LYS GLY SER SER ILE LEU ASN TYR SEQRES 7 C 145 SER TYR PRO LEU CYS GLU GLU ASP GLN PRO LYS PHE SER SEQRES 8 C 145 PHE CYS GLY ARG ARG LYS GLY GLU GLN ILE TYR TYR ALA SEQRES 9 C 145 GLY PRO VAL ASN ASN PRO GLY LEU ASP VAL PRO GLN GLY SEQRES 10 C 145 GLU TYR GLN LEU LEU LEU GLU LEU TYR ASN GLU ASN ARG SEQRES 11 C 145 ALA THR VAL ALA CYS ALA ASN ALA THR VAL THR SER SER SEQRES 12 C 145 GLU PHE SEQRES 1 B 606 THR THR SER SER ASP GLN LYS CYS ILE GLU LYS GLU VAL SEQRES 2 B 606 ASN LYS THR TYR ASN CYS GLU ASN LEU GLY LEU ASN GLU SEQRES 3 B 606 ILE PRO GLY THR LEU PRO ASN SER THR GLU CYS LEU GLU SEQRES 4 B 606 PHE SER PHE ASN VAL LEU PRO THR ILE GLN ASN THR THR SEQRES 5 B 606 PHE SER ARG LEU ILE ASN LEU THR PHE LEU ASP LEU THR SEQRES 6 B 606 ARG CYS GLN ILE TYR TRP ILE HIS GLU ASP THR PHE GLN SEQRES 7 B 606 SER GLN HIS ARG LEU ASP THR LEU VAL LEU THR ALA ASN SEQRES 8 B 606 PRO LEU ILE PHE MET ALA GLU THR ALA LEU SER GLY PRO SEQRES 9 B 606 LYS ALA LEU LYS HIS LEU PHE PHE ILE GLN THR GLY ILE SEQRES 10 B 606 SER SER ILE ASP PHE ILE PRO LEU HIS ASN GLN LYS THR SEQRES 11 B 606 LEU GLU SER LEU TYR LEU GLY SER ASN HIS ILE SER SER SEQRES 12 B 606 ILE LYS LEU PRO LYS GLY PHE PRO THR GLU LYS LEU LYS SEQRES 13 B 606 VAL LEU ASP PHE GLN ASN ASN ALA ILE HIS TYR LEU SER SEQRES 14 B 606 LYS GLU ASP MET SER SER LEU GLN GLN ALA THR ASN LEU SEQRES 15 B 606 SER LEU ASN LEU ASN GLY ASN ASP ILE ALA GLY ILE GLU SEQRES 16 B 606 PRO GLY ALA PHE ASP SER ALA VAL PHE GLN SER LEU ASN SEQRES 17 B 606 PHE GLY GLY THR GLN ASN LEU LEU VAL ILE PHE LYS GLY SEQRES 18 B 606 LEU LYS ASN SER THR ILE GLN SER LEU TRP LEU GLY THR SEQRES 19 B 606 PHE GLU ASP MET ASP ASP GLU ASP ILE SER PRO ALA VAL SEQRES 20 B 606 PHE GLU GLY LEU CYS GLU MET SER VAL GLU SER ILE ASN SEQRES 21 B 606 LEU GLN LYS HIS TYR PHE PHE ASN ILE SER SER ASN THR SEQRES 22 B 606 PHE HIS CYS PHE SER GLY LEU GLN GLU LEU ASP LEU THR SEQRES 23 B 606 ALA THR HIS LEU SER GLU LEU PRO SER GLY LEU VAL GLY SEQRES 24 B 606 LEU SER THR LEU LYS LYS LEU VAL LEU SER ALA ASN LYS SEQRES 25 B 606 PHE GLU ASN LEU CYS GLN ILE SER ALA SER ASN PHE PRO SEQRES 26 B 606 SER LEU THR HIS LEU SER ILE LYS GLY ASN THR LYS ARG SEQRES 27 B 606 LEU GLU LEU GLY THR GLY CYS LEU GLU ASN LEU GLU ASN SEQRES 28 B 606 LEU ARG GLU LEU ASP LEU SER HIS ASP ASP ILE GLU THR SEQRES 29 B 606 SER ASP CYS CYS ASN LEU GLN LEU ARG ASN LEU SER HIS SEQRES 30 B 606 LEU GLN SER LEU ASN LEU SER TYR ASN GLU PRO LEU SER SEQRES 31 B 606 LEU LYS THR GLU ALA PHE LYS GLU CYS PRO GLN LEU GLU SEQRES 32 B 606 LEU LEU ASP LEU ALA PHE THR ARG LEU LYS VAL LYS ASP SEQRES 33 B 606 ALA GLN SER PRO PHE GLN ASN LEU HIS LEU LEU LYS VAL SEQRES 34 B 606 LEU ASN LEU SER HIS SER LEU LEU ASP ILE SER SER GLU SEQRES 35 B 606 GLN LEU PHE ASP GLY LEU PRO ALA LEU GLN HIS LEU ASN SEQRES 36 B 606 LEU GLN GLY ASN HIS PHE PRO LYS GLY ASN ILE GLN LYS SEQRES 37 B 606 THR ASN SER LEU GLN THR LEU GLY ARG LEU GLU ILE LEU SEQRES 38 B 606 VAL LEU SER PHE CYS ASP LEU SER SER ILE ASP GLN HIS SEQRES 39 B 606 ALA PHE THR SER LEU LYS MET MET ASN HIS VAL ASP LEU SEQRES 40 B 606 SER HIS ASN ARG LEU THR SER SER SER ILE GLU ALA LEU SEQRES 41 B 606 SER HIS LEU LYS GLY ILE TYR LEU ASN LEU ALA SER ASN SEQRES 42 B 606 HIS ILE SER ILE ILE LEU PRO SER LEU LEU PRO ILE LEU SEQRES 43 B 606 SER GLN GLN ARG THR ILE ASN LEU ARG GLN ASN PRO LEU SEQRES 44 B 606 ASP CYS THR CYS SER ASN ILE TYR PHE LEU GLU TRP TYR SEQRES 45 B 606 LYS GLU ASN MET GLN LYS LEU GLU ASP THR GLU ASP THR SEQRES 46 B 606 LEU CYS GLU ASN PRO PRO LEU LEU ARG GLY VAL ARG LEU SEQRES 47 B 606 SER ASP VAL THR LEU SER CYS SER SEQRES 1 D 145 ASP HIS GLY SER GLU ASN GLY TRP PRO LYS HIS THR ALA SEQRES 2 D 145 CYS ASN SER GLY GLY LEU GLU VAL VAL TYR GLN SER CYS SEQRES 3 D 145 ASP PRO LEU GLN ASP PHE GLY LEU SER ILE ASP GLN CYS SEQRES 4 D 145 SER LYS GLN ILE GLN SER ASN LEU ASN ILE ARG PHE GLY SEQRES 5 D 145 ILE ILE LEU ARG GLN ASP ILE ARG LYS LEU PHE LEU ASP SEQRES 6 D 145 ILE THR LEU MET ALA LYS GLY SER SER ILE LEU ASN TYR SEQRES 7 D 145 SER TYR PRO LEU CYS GLU GLU ASP GLN PRO LYS PHE SER SEQRES 8 D 145 PHE CYS GLY ARG ARG LYS GLY GLU GLN ILE TYR TYR ALA SEQRES 9 D 145 GLY PRO VAL ASN ASN PRO GLY LEU ASP VAL PRO GLN GLY SEQRES 10 D 145 GLU TYR GLN LEU LEU LEU GLU LEU TYR ASN GLU ASN ARG SEQRES 11 D 145 ALA THR VAL ALA CYS ALA ASN ALA THR VAL THR SER SER SEQRES 12 D 145 GLU PHE MODRES 3T6Q ASN D 156 ASN GLYCOSYLATION SITE MODRES 3T6Q ASN A 244 ASN GLYCOSYLATION SITE MODRES 3T6Q ASN B 53 ASN GLYCOSYLATION SITE MODRES 3T6Q ASN A 451 ASN GLYCOSYLATION SITE MODRES 3T6Q ASN B 394 ASN GLYCOSYLATION SITE MODRES 3T6Q ASN B 70 ASN GLYCOSYLATION SITE MODRES 3T6Q ASN A 402 ASN GLYCOSYLATION SITE MODRES 3T6Q ASN B 34 ASN GLYCOSYLATION SITE MODRES 3T6Q ASN C 96 ASN GLYCOSYLATION SITE MODRES 3T6Q ASN B 451 ASN GLYCOSYLATION SITE MODRES 3T6Q ASN A 53 ASN GLYCOSYLATION SITE MODRES 3T6Q ASN A 70 ASN GLYCOSYLATION SITE MODRES 3T6Q ASN B 402 ASN GLYCOSYLATION SITE MODRES 3T6Q ASN B 244 ASN GLYCOSYLATION SITE MODRES 3T6Q ASN D 96 ASN GLYCOSYLATION SITE MODRES 3T6Q ASN A 34 ASN GLYCOSYLATION SITE MODRES 3T6Q ASN C 156 ASN GLYCOSYLATION SITE MODRES 3T6Q ASN A 394 ASN GLYCOSYLATION SITE HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET MAN E 5 11 HET MAN E 6 11 HET MAN E 7 11 HET MAN E 8 11 HET MAN E 9 11 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET NAG H 1 14 HET NAG H 2 14 HET BMA H 3 11 HET MAN H 4 11 HET MAN H 5 11 HET MAN H 6 11 HET MAN H 7 11 HET MAN H 8 11 HET NAG I 1 14 HET NAG I 2 14 HET CU A 1 1 HET GOL A 3 6 HET GOL A 6 6 HET GOL A 9 6 HET GOL A 10 6 HET GOL A 15 6 HET NAG A 700 14 HET NAG A 701 14 HET NAG A 702 14 HET NAG A 703 14 HET NAG A 704 14 HET GOL C 4 6 HET GOL C 12 6 HET GOL C 13 6 HET NAG C 201 14 HET NAG C 202 14 HET GOL B 5 6 HET GOL B 8 6 HET GOL B 11 6 HET NAG B 700 14 HET NAG B 701 14 HET GOL B 2 6 HET NAG B 703 14 HET NAG B 704 14 HET GOL D 1 6 HET GOL D 7 6 HET GOL D 14 6 HET NAG D 201 14 HET NAG D 202 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CU COPPER (II) ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 NAG 23(C8 H15 N O6) FORMUL 5 BMA 2(C6 H12 O6) FORMUL 5 MAN 11(C6 H12 O6) FORMUL 10 CU CU 2+ FORMUL 11 GOL 15(C3 H8 O3) FORMUL 39 HOH *1149(H2 O) HELIX 1 1 SER A 139 ILE A 143 5 5 HELIX 2 2 SER A 189 SER A 195 1 7 HELIX 3 3 ASN A 234 LEU A 242 1 9 HELIX 4 4 SER A 264 MET A 274 5 11 HELIX 5 5 ASN A 335 PHE A 344 5 10 HELIX 6 6 PHE A 481 LYS A 483 5 3 HELIX 7 7 ASN A 490 LEU A 495 5 6 HELIX 8 8 THR A 533 SER A 541 5 9 HELIX 9 9 LEU A 559 SER A 561 5 3 HELIX 10 10 LEU A 562 GLN A 568 1 7 HELIX 11 11 THR A 582 SER A 584 5 3 HELIX 12 12 ASN A 585 ASN A 595 1 11 HELIX 13 13 ASP A 601 THR A 605 5 5 HELIX 14 14 PRO A 610 ARG A 614 5 5 HELIX 15 15 ARG A 617 VAL A 621 5 5 HELIX 16 16 SER B 139 ILE B 143 5 5 HELIX 17 17 SER B 189 SER B 195 1 7 HELIX 18 18 ASN B 234 LEU B 242 1 9 HELIX 19 19 SER B 264 MET B 274 5 11 HELIX 20 20 PHE B 294 SER B 298 5 5 HELIX 21 21 ASN B 335 PHE B 344 5 10 HELIX 22 22 PHE B 481 LYS B 483 5 3 HELIX 23 23 THR B 533 SER B 541 5 9 HELIX 24 24 LEU B 559 SER B 561 5 3 HELIX 25 25 LEU B 562 GLN B 569 1 8 HELIX 26 26 THR B 582 SER B 584 5 3 HELIX 27 27 ASN B 585 ASN B 595 1 11 HELIX 28 28 ASP B 601 THR B 605 5 5 HELIX 29 29 PRO B 610 ARG B 614 5 5 HELIX 30 30 ARG B 617 VAL B 621 5 5 SHEET 1 A25 ILE A 29 GLU A 32 0 SHEET 2 A25 THR A 36 ASN A 38 -1 O ASN A 38 N ILE A 29 SHEET 3 A25 CYS A 57 GLU A 59 1 O GLU A 59 N TYR A 37 SHEET 4 A25 PHE A 81 ASP A 83 1 O ASP A 83 N LEU A 58 SHEET 5 A25 THR A 105 VAL A 107 1 O VAL A 107 N LEU A 82 SHEET 6 A25 HIS A 129 PHE A 131 1 O PHE A 131 N LEU A 106 SHEET 7 A25 SER A 153 TYR A 155 1 O TYR A 155 N LEU A 130 SHEET 8 A25 VAL A 177 ASP A 179 1 O ASP A 179 N LEU A 154 SHEET 9 A25 LEU A 202 ASN A 205 1 O SER A 203 N LEU A 178 SHEET 10 A25 VAL A 223 ASN A 228 1 O SER A 226 N LEU A 204 SHEET 11 A25 THR A 246 TRP A 251 1 O THR A 246 N PHE A 224 SHEET 12 A25 SER A 275 ASN A 280 1 O SER A 278 N LEU A 250 SHEET 13 A25 GLU A 302 ASP A 304 1 O ASP A 304 N ILE A 279 SHEET 14 A25 LYS A 325 VAL A 327 1 O VAL A 327 N LEU A 303 SHEET 15 A25 HIS A 349 SER A 351 1 O SER A 351 N LEU A 326 SHEET 16 A25 GLU A 374 ASP A 376 1 O ASP A 376 N LEU A 350 SHEET 17 A25 SER A 400 ASN A 402 1 O ASN A 402 N LEU A 375 SHEET 18 A25 LEU A 424 ASP A 426 1 O ASP A 426 N LEU A 401 SHEET 19 A25 VAL A 449 ASN A 451 1 O VAL A 449 N LEU A 425 SHEET 20 A25 HIS A 473 ASN A 475 1 O HIS A 473 N LEU A 450 SHEET 21 A25 ILE A 500 VAL A 502 1 O ILE A 500 N LEU A 474 SHEET 22 A25 HIS A 524 ASP A 526 1 O ASP A 526 N LEU A 501 SHEET 23 A25 TYR A 547 ASN A 549 1 O TYR A 547 N VAL A 525 SHEET 24 A25 THR A 571 ASN A 573 1 O THR A 571 N LEU A 548 SHEET 25 A25 LEU A 599 GLU A 600 1 O GLU A 600 N ILE A 572 SHEET 1 B 3 THR A 67 ILE A 68 0 SHEET 2 B 3 TRP A 91 ILE A 92 1 O TRP A 91 N ILE A 68 SHEET 3 B 3 PHE A 115 MET A 116 1 O PHE A 115 N ILE A 92 SHEET 1 C 2 TYR A 187 LEU A 188 0 SHEET 2 C 2 GLY A 213 ILE A 214 1 O GLY A 213 N LEU A 188 SHEET 1 D 3 THR A 384 CYS A 387 0 SHEET 2 D 3 LEU A 409 LEU A 411 1 O SER A 410 N CYS A 387 SHEET 3 D 3 LEU A 432 LYS A 433 1 O LYS A 433 N LEU A 409 SHEET 1 E 2 ASN A 485 ILE A 486 0 SHEET 2 E 2 SER A 510 ILE A 511 1 O SER A 510 N ILE A 486 SHEET 1 F 2 LEU A 579 ASP A 580 0 SHEET 2 F 2 CYS A 607 ASN A 609 1 O GLU A 608 N LEU A 579 SHEET 1 G 7 HIS C 30 SER C 35 0 SHEET 2 G 7 LEU C 38 SER C 44 -1 O TYR C 42 N HIS C 30 SHEET 3 G 7 THR C 151 SER C 161 -1 O THR C 158 N VAL C 41 SHEET 4 G 7 GLY C 136 TYR C 145 -1 N LEU C 140 O ALA C 157 SHEET 5 G 7 LEU C 81 ALA C 89 -1 N ASP C 84 O GLU C 143 SHEET 6 G 7 SER C 92 GLU C 103 -1 O TYR C 97 N ILE C 85 SHEET 7 G 7 GLN C 106 PRO C 107 -1 O GLN C 106 N GLU C 103 SHEET 1 H 3 GLY C 52 ILE C 55 0 SHEET 2 H 3 ASN C 67 ILE C 73 -1 O ARG C 69 N SER C 54 SHEET 3 H 3 GLN C 119 PRO C 125 -1 O ILE C 120 N ILE C 72 SHEET 1 I 2 GLN C 61 ILE C 62 0 SHEET 2 I 2 LEU C 131 ASP C 132 -1 O LEU C 131 N ILE C 62 SHEET 1 J25 ILE B 29 GLU B 32 0 SHEET 2 J25 THR B 36 ASN B 38 -1 O ASN B 38 N ILE B 29 SHEET 3 J25 CYS B 57 GLU B 59 1 O GLU B 59 N TYR B 37 SHEET 4 J25 PHE B 81 ASP B 83 1 O PHE B 81 N LEU B 58 SHEET 5 J25 THR B 105 VAL B 107 1 O VAL B 107 N LEU B 82 SHEET 6 J25 HIS B 129 PHE B 131 1 O PHE B 131 N LEU B 106 SHEET 7 J25 SER B 153 TYR B 155 1 O TYR B 155 N LEU B 130 SHEET 8 J25 VAL B 177 ASP B 179 1 O ASP B 179 N LEU B 154 SHEET 9 J25 SER B 203 ASN B 205 1 O ASN B 205 N LEU B 178 SHEET 10 J25 VAL B 223 ASN B 228 1 O SER B 226 N LEU B 204 SHEET 11 J25 THR B 246 TRP B 251 1 O TRP B 251 N LEU B 227 SHEET 12 J25 SER B 275 ASN B 280 1 O SER B 275 N ILE B 247 SHEET 13 J25 GLU B 302 ASP B 304 1 O ASP B 304 N ILE B 279 SHEET 14 J25 LYS B 325 VAL B 327 1 O VAL B 327 N LEU B 303 SHEET 15 J25 HIS B 349 SER B 351 1 O HIS B 349 N LEU B 326 SHEET 16 J25 GLU B 374 ASP B 376 1 O GLU B 374 N LEU B 350 SHEET 17 J25 SER B 400 ASN B 402 1 O SER B 400 N LEU B 375 SHEET 18 J25 LEU B 424 ASP B 426 1 O ASP B 426 N LEU B 401 SHEET 19 J25 VAL B 449 ASN B 451 1 O VAL B 449 N LEU B 425 SHEET 20 J25 HIS B 473 ASN B 475 1 O HIS B 473 N LEU B 450 SHEET 21 J25 ILE B 500 VAL B 502 1 O ILE B 500 N LEU B 474 SHEET 22 J25 HIS B 524 ASP B 526 1 O HIS B 524 N LEU B 501 SHEET 23 J25 TYR B 547 ASN B 549 1 O TYR B 547 N VAL B 525 SHEET 24 J25 THR B 571 ASN B 573 1 O THR B 571 N LEU B 548 SHEET 25 J25 LEU B 599 GLU B 600 1 O GLU B 600 N ILE B 572 SHEET 1 K 3 THR B 67 ILE B 68 0 SHEET 2 K 3 TRP B 91 ILE B 92 1 O TRP B 91 N ILE B 68 SHEET 3 K 3 PHE B 115 MET B 116 1 O PHE B 115 N ILE B 92 SHEET 1 L 2 TYR B 187 LEU B 188 0 SHEET 2 L 2 GLY B 213 ILE B 214 1 O GLY B 213 N LEU B 188 SHEET 1 M 3 THR B 384 CYS B 387 0 SHEET 2 M 3 LEU B 409 LEU B 411 1 O SER B 410 N THR B 384 SHEET 3 M 3 LEU B 432 LYS B 433 1 O LYS B 433 N LEU B 409 SHEET 1 N 2 ASN B 485 ILE B 486 0 SHEET 2 N 2 SER B 510 ILE B 511 1 O SER B 510 N ILE B 486 SHEET 1 O 2 LEU B 579 ASP B 580 0 SHEET 2 O 2 CYS B 607 ASN B 609 1 O GLU B 608 N LEU B 579 SHEET 1 P 7 HIS D 30 SER D 35 0 SHEET 2 P 7 LEU D 38 SER D 44 -1 O TYR D 42 N HIS D 30 SHEET 3 P 7 THR D 151 SER D 161 -1 O ASN D 156 N GLN D 43 SHEET 4 P 7 GLY D 136 TYR D 145 -1 N GLY D 136 O SER D 161 SHEET 5 P 7 LEU D 81 ALA D 89 -1 N PHE D 82 O TYR D 145 SHEET 6 P 7 SER D 92 GLU D 103 -1 O LEU D 95 N LEU D 87 SHEET 7 P 7 GLN D 106 PRO D 107 -1 O GLN D 106 N GLU D 103 SHEET 1 Q 3 GLY D 52 ILE D 55 0 SHEET 2 Q 3 ASN D 67 ILE D 73 -1 O GLY D 71 N GLY D 52 SHEET 3 Q 3 GLN D 119 PRO D 125 -1 O TYR D 122 N PHE D 70 SHEET 1 R 2 GLN D 61 ILE D 62 0 SHEET 2 R 2 LEU D 131 ASP D 132 -1 O LEU D 131 N ILE D 62 SSBOND 1 CYS A 28 CYS A 39 1555 1555 2.73 SSBOND 2 CYS A 272 CYS A 296 1555 1555 2.15 SSBOND 3 CYS A 337 CYS A 365 1555 1555 2.10 SSBOND 4 CYS A 387 CYS A 388 1555 1555 2.06 SSBOND 5 CYS A 581 CYS A 607 1555 1555 2.06 SSBOND 6 CYS A 583 CYS A 625 1555 1555 2.10 SSBOND 7 CYS C 33 CYS C 58 1555 1555 2.04 SSBOND 8 CYS C 45 CYS C 154 1555 1555 2.14 SSBOND 9 CYS C 102 CYS C 112 1555 1555 2.14 SSBOND 10 CYS B 28 CYS B 39 1555 1555 2.10 SSBOND 11 CYS B 272 CYS B 296 1555 1555 2.89 SSBOND 12 CYS B 337 CYS B 365 1555 1555 2.08 SSBOND 13 CYS B 387 CYS B 388 1555 1555 2.04 SSBOND 14 CYS B 581 CYS B 607 1555 1555 2.04 SSBOND 15 CYS B 583 CYS B 625 1555 1555 2.09 SSBOND 16 CYS D 33 CYS D 58 1555 1555 2.04 SSBOND 17 CYS D 45 CYS D 154 1555 1555 2.10 SSBOND 18 CYS D 102 CYS D 112 1555 1555 2.13 LINK ND2 ASN A 34 C1 NAG A 700 1555 1555 1.45 LINK ND2 ASN A 53 C1 NAG A 701 1555 1555 1.45 LINK ND2 ASN A 70 C1 NAG A 702 1555 1555 1.45 LINK ND2 ASN A 244 C1 NAG A 703 1555 1555 1.43 LINK ND2 ASN A 394 C1 NAG A 704 1555 1555 1.46 LINK ND2 ASN A 402 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN A 451 C1 NAG F 1 1555 1555 1.43 LINK ND2 ASN C 96 C1 NAG C 201 1555 1555 1.44 LINK ND2 ASN C 156 C1 NAG C 202 1555 1555 1.45 LINK ND2 ASN B 34 C1 NAG B 700 1555 1555 1.44 LINK ND2 ASN B 53 C1 NAG B 701 1555 1555 1.43 LINK ND2 ASN B 70 C1 NAG G 1 1555 1555 1.44 LINK ND2 ASN B 244 C1 NAG B 703 1555 1555 1.45 LINK ND2 ASN B 394 C1 NAG B 704 1555 1555 1.44 LINK ND2 ASN B 402 C1 NAG H 1 1555 1555 1.45 LINK ND2 ASN B 451 C1 NAG I 1 1555 1555 1.44 LINK ND2 ASN D 96 C1 NAG D 201 1555 1555 1.45 LINK ND2 ASN D 156 C1 NAG D 202 1555 1555 1.43 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.43 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.42 LINK O6 BMA E 3 C1 MAN E 4 1555 1555 1.46 LINK O3 BMA E 3 C1 MAN E 9 1555 1555 1.46 LINK O3 MAN E 4 C1 MAN E 5 1555 1555 1.45 LINK O6 MAN E 4 C1 MAN E 7 1555 1555 1.43 LINK O2 MAN E 5 C1 MAN E 6 1555 1555 1.46 LINK O2 MAN E 7 C1 MAN E 8 1555 1555 1.47 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.41 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.46 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.42 LINK O4 NAG H 2 C1 BMA H 3 1555 1555 1.44 LINK O6 BMA H 3 C1 MAN H 4 1555 1555 1.44 LINK O3 BMA H 3 C1 MAN H 8 1555 1555 1.46 LINK O6 MAN H 4 C1 MAN H 5 1555 1555 1.43 LINK O3 MAN H 4 C1 MAN H 7 1555 1555 1.45 LINK O2 MAN H 5 C1 MAN H 6 1555 1555 1.44 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.43 LINK CU CU A 1 OE2 GLU A 269 1555 1555 2.00 LINK CU CU A 1 NE2 HIS A 295 1555 1555 2.04 CISPEP 1 GLN A 26 LYS A 27 0 -1.95 CISPEP 2 CYS A 387 CYS A 388 0 2.59 CISPEP 3 ASN A 609 PRO A 610 0 -0.52 CISPEP 4 GLN B 26 LYS B 27 0 2.68 CISPEP 5 CYS B 387 CYS B 388 0 3.97 CISPEP 6 ASN B 609 PRO B 610 0 2.23 CRYST1 143.753 192.790 75.799 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006956 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013193 0.00000