HEADER TRANSPORT PROTEIN 30-JUL-11 3T7L TITLE CRYSTAL STRUCTURE OF THE FYVE DOMAIN OF ENDOFIN (ZFYVE16) AT 1.1A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 16; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FYVE DOMAIN (UNP RESIDUES 733-820); COMPND 5 SYNONYM: ENDOFIN, ENDOSOME-ASSOCIATED FYVE DOMAIN PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA0305, ZFYVE16; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-ZB KEYWDS STRUCTURAL GENOMICS CONSORTIUM, SGC, ZINC FINGER, LIPID BINDING KEYWDS 2 PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,E.WILLIAMS,K.GUO,C.SANVITALE,G.BERRIDGE,T.KROJER, AUTHOR 2 J.R.C.MUNIZ,P.CANNING,C.PHILLIPS,A.SHRESTHA,F.VON DELFT,J.WEIGELT, AUTHOR 3 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,A.BULLOCK,STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (SGC) REVDAT 2 28-FEB-24 3T7L 1 REMARK SEQADV LINK REVDAT 1 31-AUG-11 3T7L 0 JRNL AUTH A.CHAIKUAD,E.WILLIAMS,K.GUO,C.SANVITALE,G.BERRIDGE,T.KROJER, JRNL AUTH 2 J.R.C.MUNIZ,P.CANNING,C.PHILLIPS,A.SHRESTHA,F.VON DELFT, JRNL AUTH 3 J.WEIGELT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,A.BULLOCK, JRNL AUTH 4 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF THE FYVE DOMAIN OF ENDOFIN (ZFYVE16) AT JRNL TITL 2 1.1A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.154 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1550 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1914 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 581 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : -0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.027 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.017 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.747 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 685 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 504 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 931 ; 1.676 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1220 ; 1.014 ; 3.013 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 95 ; 6.421 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 30 ;32.763 ;22.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 130 ;12.062 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;18.662 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 100 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 774 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 144 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2 ; 2.375 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 735 A 740 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4120 7.8220 26.6450 REMARK 3 T TENSOR REMARK 3 T11: 0.0969 T22: 0.1332 REMARK 3 T33: 0.2007 T12: 0.0567 REMARK 3 T13: -0.0049 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 14.1987 L22: 17.1932 REMARK 3 L33: 7.2081 L12: -14.4191 REMARK 3 L13: -2.2279 L23: 2.4162 REMARK 3 S TENSOR REMARK 3 S11: -0.2879 S12: -0.2712 S13: 0.8081 REMARK 3 S21: 0.2995 S22: 0.0881 S23: -0.4700 REMARK 3 S31: -0.2554 S32: 0.2499 S33: 0.1998 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 741 A 764 REMARK 3 ORIGIN FOR THE GROUP (A): 29.9690 -6.7740 28.6050 REMARK 3 T TENSOR REMARK 3 T11: 0.0197 T22: 0.0293 REMARK 3 T33: 0.0121 T12: 0.0075 REMARK 3 T13: 0.0044 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.4491 L22: 2.0909 REMARK 3 L33: 1.3914 L12: -1.0862 REMARK 3 L13: 0.4221 L23: -0.9250 REMARK 3 S TENSOR REMARK 3 S11: 0.0491 S12: 0.1172 S13: -0.0112 REMARK 3 S21: -0.1264 S22: -0.0624 S23: -0.0347 REMARK 3 S31: 0.0509 S32: 0.1412 S33: 0.0132 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 765 A 808 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7170 -4.4710 28.9500 REMARK 3 T TENSOR REMARK 3 T11: 0.0258 T22: 0.0642 REMARK 3 T33: 0.0502 T12: -0.0116 REMARK 3 T13: -0.0133 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.9349 L22: 1.5511 REMARK 3 L33: 2.6406 L12: -0.3126 REMARK 3 L13: -0.1566 L23: -0.7472 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: 0.1130 S13: -0.0846 REMARK 3 S21: -0.1064 S22: 0.0771 S23: 0.2576 REMARK 3 S31: 0.1003 S32: -0.3675 S33: -0.0796 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3T7L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9611 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30734 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.090 REMARK 200 RESOLUTION RANGE LOW (A) : 28.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.74800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 28.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M NANO3, 10% REMARK 280 ETHYLENE GLYCOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.43950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 21.47200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 21.47200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.65925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 21.47200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 21.47200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.21975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 21.47200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 21.47200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.65925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 21.47200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 21.47200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.21975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.43950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 731 REMARK 465 MET A 732 REMARK 465 GLU A 733 REMARK 465 GLY A 734 REMARK 465 ALA A 809 REMARK 465 PHE A 810 REMARK 465 GLU A 811 REMARK 465 ARG A 812 REMARK 465 MET A 813 REMARK 465 MET A 814 REMARK 465 SER A 815 REMARK 465 PRO A 816 REMARK 465 THR A 817 REMARK 465 GLY A 818 REMARK 465 SER A 819 REMARK 465 ASN A 820 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 735 CG CD1 CD2 REMARK 470 LYS A 806 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 54 O HOH A 82 1.92 REMARK 500 O HOH A 12 O HOH A 90 1.99 REMARK 500 O HOH A 35 O HOH A 78 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 755 -62.85 -104.99 REMARK 500 CYS A 781 80.52 -155.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 753 SG REMARK 620 2 CYS A 756 SG 106.6 REMARK 620 3 CYS A 777 SG 115.6 113.8 REMARK 620 4 CYS A 780 SG 107.2 110.3 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 769 SG REMARK 620 2 CYS A 772 SG 103.2 REMARK 620 3 CYS A 797 SG 112.7 117.3 REMARK 620 4 CYS A 800 SG 106.3 112.1 104.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 821 DBREF 3T7L A 733 820 UNP Q7Z3T8 ZFY16_HUMAN 733 820 SEQADV 3T7L SER A 731 UNP Q7Z3T8 EXPRESSION TAG SEQADV 3T7L MET A 732 UNP Q7Z3T8 EXPRESSION TAG SEQRES 1 A 90 SER MET GLU GLY LEU VAL LEU GLY GLN LYS GLN PRO THR SEQRES 2 A 90 TRP VAL PRO ASP SER GLU ALA PRO ASN CYS MET ASN CYS SEQRES 3 A 90 GLN VAL LYS PHE THR PHE THR LYS ARG ARG HIS HIS CYS SEQRES 4 A 90 ARG ALA CYS GLY LYS VAL PHE CYS GLY VAL CYS CYS ASN SEQRES 5 A 90 ARG LYS CYS LYS LEU GLN TYR LEU GLU LYS GLU ALA ARG SEQRES 6 A 90 VAL CYS VAL VAL CYS TYR GLU THR ILE SER LYS ALA GLN SEQRES 7 A 90 ALA PHE GLU ARG MET MET SER PRO THR GLY SER ASN HET ZN A 1 1 HET ZN A 2 1 HET EDO A 821 4 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *86(H2 O) HELIX 1 1 PRO A 746 ALA A 750 5 5 HELIX 2 2 CYS A 777 CYS A 781 5 5 HELIX 3 3 CYS A 797 GLN A 808 1 12 SHEET 1 A 2 HIS A 767 HIS A 768 0 SHEET 2 A 2 VAL A 775 PHE A 776 -1 O PHE A 776 N HIS A 767 SHEET 1 B 2 ARG A 783 LYS A 786 0 SHEET 2 B 2 GLU A 793 VAL A 796 -1 O VAL A 796 N ARG A 783 LINK ZN ZN A 1 SG CYS A 753 1555 1555 2.37 LINK ZN ZN A 1 SG CYS A 756 1555 1555 2.32 LINK ZN ZN A 1 SG CYS A 777 1555 1555 2.35 LINK ZN ZN A 1 SG CYS A 780 1555 1555 2.33 LINK ZN ZN A 2 SG CYS A 769 1555 1555 2.37 LINK ZN ZN A 2 SG CYS A 772 1555 1555 2.34 LINK ZN ZN A 2 SG CYS A 797 1555 1555 2.35 LINK ZN ZN A 2 SG CYS A 800 1555 1555 2.32 SITE 1 AC1 4 CYS A 753 CYS A 756 CYS A 777 CYS A 780 SITE 1 AC2 4 CYS A 769 CYS A 772 CYS A 797 CYS A 800 SITE 1 AC3 8 HOH A 26 HOH A 52 HOH A 63 HOH A 82 SITE 2 AC3 8 MET A 754 ASN A 755 GLN A 757 PHE A 762 CRYST1 42.944 42.944 76.879 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023286 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023286 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013007 0.00000