HEADER HYDROLASE 01-AUG-11 3T8J TITLE STRUCTURAL ANALYSIS OF THERMOSTABLE S. SOLFATARICUS PYRIMIDINE- TITLE 2 SPECIFIC NUCLEOSIDE HYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE NUCLEOSIDASE, (IUNH-1); COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.2.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 GENE: IUNH-1, SSO0505; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-22B KEYWDS NUCLEOSIDE HYDROLASE, THERMOSTABLE PROTEIN, OPEN (ALPHA, BETA) KEYWDS 2 STRUCTURE, ROSSMANN FOLD, NH-FOLD, NUCLEOTIDE METABOLISM, N- KEYWDS 3 GLYCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.MINICI,G.CACCIAPUOTI,E.DE LEO,M.PORCELLI,M.DEGANO REVDAT 3 13-SEP-23 3T8J 1 REMARK LINK REVDAT 2 03-OCT-12 3T8J 1 JRNL REVDAT 1 16-MAY-12 3T8J 0 JRNL AUTH C.MINICI,G.CACCIAPUOTI,E.DE LEO,M.PORCELLI,M.DEGANO JRNL TITL NEW DETERMINANTS IN THE CATALYTIC MECHANISM OF NUCLEOSIDE JRNL TITL 2 HYDROLASES FROM THE STRUCTURES OF TWO ISOZYMES FROM JRNL TITL 3 SULFOLOBUS SOLFATARICUS. JRNL REF BIOCHEMISTRY V. 51 4590 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22551416 JRNL DOI 10.1021/BI300209G REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.PORCELLI,L.CONCILIO,I.PELUSO,A.MARABOTTI,A.FACCHIANO, REMARK 1 AUTH 2 G.CACCIAPUOTI REMARK 1 TITL PYRIMIDINE-SPECIFIC RIBONUCLEOSIDE HYDROLASE FROM THE REMARK 1 TITL 2 ARCHAEON SULFOLOBUS SOLFATARICUS--BIOCHEMICAL REMARK 1 TITL 3 CHARACTERIZATION AND HOMOLOGY MODELING. REMARK 1 REF FEBS J. V. 275 1900 2008 REMARK 1 REFN ISSN 1742-464X REMARK 1 PMID 18355316 REMARK 1 DOI 10.1111/J.1742-4658.2008.06348.X REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 63536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3224 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4401 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.1550 REMARK 3 BIN FREE R VALUE SET COUNT : 223 REMARK 3 BIN FREE R VALUE : 0.1600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2484 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.62000 REMARK 3 B22 (A**2) : -0.62000 REMARK 3 B33 (A**2) : 0.93000 REMARK 3 B12 (A**2) : -0.31000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.147 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2618 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1730 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3579 ; 1.399 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4264 ; 0.933 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 331 ; 6.217 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;33.670 ;25.246 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 465 ;12.585 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.755 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 411 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2912 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 504 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1591 ; 0.704 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 637 ; 0.215 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2606 ; 1.278 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1027 ; 2.090 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 964 ; 3.356 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 78 REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): -16.1650 83.2820 2.7760 REMARK 3 T TENSOR REMARK 3 T11: 0.0617 T22: 0.1584 REMARK 3 T33: 0.0357 T12: -0.0225 REMARK 3 T13: -0.0015 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.1639 L22: 0.1878 REMARK 3 L33: 0.5902 L12: 0.2875 REMARK 3 L13: -0.0757 L23: 0.0187 REMARK 3 S TENSOR REMARK 3 S11: -0.0421 S12: -0.1466 S13: -0.0844 REMARK 3 S21: 0.0270 S22: -0.0058 S23: -0.0614 REMARK 3 S31: 0.0055 S32: 0.1189 S33: 0.0478 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9750 86.3300 11.8040 REMARK 3 T TENSOR REMARK 3 T11: 0.0756 T22: 0.2429 REMARK 3 T33: 0.0357 T12: -0.0574 REMARK 3 T13: -0.0295 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.7745 L22: 1.3551 REMARK 3 L33: 1.3522 L12: 0.7375 REMARK 3 L13: 1.1679 L23: 0.9466 REMARK 3 S TENSOR REMARK 3 S11: 0.0728 S12: -0.2647 S13: 0.0211 REMARK 3 S21: 0.1522 S22: -0.1116 S23: -0.0738 REMARK 3 S31: -0.0175 S32: 0.0648 S33: 0.0388 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): -24.1110 81.4780 -8.1820 REMARK 3 T TENSOR REMARK 3 T11: 0.0701 T22: 0.1372 REMARK 3 T33: 0.0272 T12: -0.0224 REMARK 3 T13: 0.0022 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.9234 L22: 0.4652 REMARK 3 L33: 0.5142 L12: 0.2857 REMARK 3 L13: -0.1261 L23: -0.1306 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: 0.0825 S13: -0.0814 REMARK 3 S21: -0.0280 S22: -0.0034 S23: -0.0547 REMARK 3 S31: 0.0083 S32: 0.0380 S33: 0.0280 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 196 A 234 REMARK 3 ORIGIN FOR THE GROUP (A): -17.5450 64.8400 11.1550 REMARK 3 T TENSOR REMARK 3 T11: 0.0949 T22: 0.1525 REMARK 3 T33: 0.1401 T12: -0.0274 REMARK 3 T13: -0.0324 T23: 0.1310 REMARK 3 L TENSOR REMARK 3 L11: 4.6869 L22: 3.1197 REMARK 3 L33: 1.6008 L12: 0.5390 REMARK 3 L13: -0.7480 L23: -0.1043 REMARK 3 S TENSOR REMARK 3 S11: 0.0962 S12: -0.4271 S13: -0.6299 REMARK 3 S21: 0.2502 S22: -0.2480 S23: -0.3262 REMARK 3 S31: 0.1461 S32: 0.0668 S33: 0.1518 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 235 A 296 REMARK 3 ORIGIN FOR THE GROUP (A): -29.7820 71.7290 -12.1260 REMARK 3 T TENSOR REMARK 3 T11: 0.0932 T22: 0.1148 REMARK 3 T33: 0.0452 T12: -0.0357 REMARK 3 T13: 0.0242 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.5825 L22: 0.3692 REMARK 3 L33: 0.5720 L12: 0.3012 REMARK 3 L13: 0.1086 L23: -0.1690 REMARK 3 S TENSOR REMARK 3 S11: -0.0517 S12: 0.1633 S13: -0.1544 REMARK 3 S21: -0.1060 S22: 0.0325 S23: -0.0720 REMARK 3 S31: 0.1220 S32: 0.0173 S33: 0.0191 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 297 A 311 REMARK 3 ORIGIN FOR THE GROUP (A): -8.6040 64.7580 1.1000 REMARK 3 T TENSOR REMARK 3 T11: 0.0187 T22: 0.1229 REMARK 3 T33: 0.2784 T12: 0.0436 REMARK 3 T13: 0.0458 T23: 0.1003 REMARK 3 L TENSOR REMARK 3 L11: 9.0860 L22: 4.5357 REMARK 3 L33: 7.9111 L12: 5.0029 REMARK 3 L13: 5.3479 L23: 2.4978 REMARK 3 S TENSOR REMARK 3 S11: 0.0349 S12: 0.0919 S13: -0.6685 REMARK 3 S21: 0.0269 S22: -0.0745 S23: -0.5602 REMARK 3 S31: 0.2137 S32: 0.5073 S33: 0.0397 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3T8J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067171. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : SI (111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63536 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 11.91 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3T8I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BICINE, 1.5 M AMMONIUM SULFATE, REMARK 280 PH 9.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 14.28667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.57333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 14.28667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.57333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 14.28667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 28.57333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 14.28667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.57333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -97.47000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 168.82299 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -14.28667 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 -97.47000 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 168.82299 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -14.28667 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 184 CG - SD - CE ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG A 253 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 253 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 93 -43.00 -132.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 9 THR A 10 -146.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD2 REMARK 620 2 ASP A 14 OD1 107.3 REMARK 620 3 ILE A 121 O 119.3 131.1 REMARK 620 4 SER A 122 OG 75.9 94.6 83.7 REMARK 620 5 HOH A 468 O 90.2 91.4 101.8 166.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2MAS RELATED DB: PDB REMARK 900 RELATED ID: 1Q8F RELATED DB: PDB REMARK 900 RELATED ID: 3G5I RELATED DB: PDB DBREF 3T8J A 1 311 UNP Q97ZS5 Q97ZS5_SULSO 1 311 SEQRES 1 A 311 MET ARG HIS PHE ILE ILE ASP CYS ASP THR ALA GLU ASP SEQRES 2 A 311 ASP VAL LEU SER LEU TYR LEU LEU LEU LYS ASN ASN ILE SEQRES 3 A 311 ASP VAL VAL ALA VAL THR ILE VAL GLU GLY ASN ILE SER SEQRES 4 A 311 TYR GLU GLN GLU VAL LYS ASN ALA LEU TRP ALA LEU GLU SEQRES 5 A 311 GLN VAL ASN ARG GLU ILE PRO VAL TYR PRO GLY ALA ASN SEQRES 6 A 311 LYS PRO LEU LEU LYS ASN TYR ILE THR VAL GLU LYS VAL SEQRES 7 A 311 HIS GLY LYS GLY GLY ILE GLY ASP VAL THR VAL GLU PRO SEQRES 8 A 311 LYS ARG LEU LYS ALA GLN GLU LYS HIS ALA ALA LEU ALA SEQRES 9 A 311 ILE ILE ASP LEU ALA ASN GLU TYR ALA GLY GLU LEU GLU SEQRES 10 A 311 PHE LEU ALA ILE SER PRO LEU THR ASN LEU ALA LEU ALA SEQRES 11 A 311 TYR LEU LEU ASP ASN SER ILE VAL LYS LYS ILE LYS LYS SEQRES 12 A 311 VAL TRP VAL MET GLY GLY ALA VAL PHE GLY ILE GLY ASN SEQRES 13 A 311 ILE THR PRO VAL ALA GLU PHE ASN ILE TRP VAL ASP PRO SEQRES 14 A 311 ASP ALA ALA LYS ILE VAL PHE ASN ALA GLY PHE ASP ILE SEQRES 15 A 311 THR MET ILE PRO TRP ASP VAL ILE ILE ASN TYR PRO VAL SEQRES 16 A 311 THR ASP GLU GLU TRP ASN VAL ILE LYS ASN MET LYS THR SEQRES 17 A 311 ARG MET SER GLU LEU TYR VAL SER MET TYR LEU HIS TYR SEQRES 18 A 311 ARG GLN TYR SER SER THR VAL GLN LYS ILE ASN GLY HIS SEQRES 19 A 311 PRO HIS PRO ASP ALA ILE THR THR ALA ILE ALA ILE ASP SEQRES 20 A 311 GLY SER ILE ALA THR ARG ARG GLU LYS ARG PHE VAL VAL SEQRES 21 A 311 ILE ASP ASN THR ASP ASN ILE THR ARG GLY MET THR LEU SEQRES 22 A 311 VAL ASP ARG PHE ASP ALA ASP THR SER TRP SER ASP LYS SEQRES 23 A 311 PRO ASN ALA GLU ILE VAL TYR GLU ILE ASN LYS LYS SER SEQRES 24 A 311 PHE MET GLU LYS ILE TYR ASP LEU LEU ASN TRP PHE HET NA A 401 1 HETNAM NA SODIUM ION FORMUL 2 NA NA 1+ FORMUL 3 HOH *161(H2 O) HELIX 1 1 ALA A 11 ASN A 24 1 14 HELIX 2 2 SER A 39 VAL A 54 1 16 HELIX 3 3 VAL A 75 GLY A 80 1 6 HELIX 4 4 HIS A 100 TYR A 112 1 13 HELIX 5 5 LEU A 124 ASP A 134 1 11 HELIX 6 6 SER A 136 LYS A 140 1 5 HELIX 7 7 GLU A 162 ASP A 168 1 7 HELIX 8 8 ASP A 168 ALA A 178 1 11 HELIX 9 9 PRO A 186 ILE A 191 1 6 HELIX 10 10 THR A 196 ASN A 205 1 10 HELIX 11 11 THR A 208 VAL A 228 1 21 HELIX 12 12 HIS A 236 ASP A 247 1 12 HELIX 13 13 ASN A 296 ASN A 309 1 14 SHEET 1 A 9 VAL A 60 PRO A 62 0 SHEET 2 A 9 ASP A 27 ILE A 33 1 N VAL A 31 O TYR A 61 SHEET 3 A 9 HIS A 3 CYS A 8 1 N CYS A 8 O THR A 32 SHEET 4 A 9 LEU A 116 ALA A 120 1 O LEU A 119 N ILE A 5 SHEET 5 A 9 ILE A 141 MET A 147 1 O TRP A 145 N PHE A 118 SHEET 6 A 9 ILE A 182 ILE A 185 1 O ILE A 185 N VAL A 146 SHEET 7 A 9 ALA A 289 ILE A 295 1 O GLU A 290 N MET A 184 SHEET 8 A 9 ALA A 251 ILE A 261 -1 N GLU A 255 O ILE A 291 SHEET 9 A 9 THR A 272 ASP A 275 -1 O ASP A 275 N PHE A 258 LINK OD2 ASP A 9 NA NA A 401 1555 1555 2.28 LINK OD1 ASP A 14 NA NA A 401 1555 1555 2.30 LINK O ILE A 121 NA NA A 401 1555 1555 2.28 LINK OG SER A 122 NA NA A 401 1555 1555 2.48 LINK NA NA A 401 O HOH A 468 1555 1555 2.35 SITE 1 AC1 5 ASP A 9 ASP A 14 ILE A 121 SER A 122 SITE 2 AC1 5 HOH A 468 CRYST1 194.940 194.940 42.860 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005130 0.002962 0.000000 0.00000 SCALE2 0.000000 0.005923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023332 0.00000