HEADER ISOMERASE 01-AUG-11 3T8Q TITLE CRYSTAL STRUCTURE OF MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME TITLE 2 FAMILY PROTEIN FROM HOEFLEA PHOTOTROPHICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME FAMILY COMPND 3 PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME FAMILY COMPND 6 PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOEFLEA PHOTOTROPHICA; SOURCE 3 ORGANISM_TAXID: 411684; SOURCE 4 STRAIN: DFL-43; SOURCE 5 GENE: HPDFL43_14512; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, MADELATE RACEMASE/MUCONATE LACTONIZING KEYWDS 3 ENZYME FAMILY PROTEIN, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.AGARWAL,S.CHAMALA,B.EVANS,R.FOTI,A.GIZZI,B.HILLERICH,A.KAR, AUTHOR 2 J.LAFLEUR,R.SEIDEL,G.VILLIGAS,W.ZENCHECK,S.C.ALMO,S.SWAMINATHAN,NEW AUTHOR 3 YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 3 13-SEP-23 3T8Q 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3T8Q 1 REMARK REVDAT 1 17-AUG-11 3T8Q 0 JRNL AUTH R.AGARWAL,S.C.ALMO,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF MANDELATE RACEMASE/MUCONATE LACTONIZING JRNL TITL 2 ENZYME FAMILY PROTEIN FROM HOEFLEA PHOTOTROPHICA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 53224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2843 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3642 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.1410 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.2190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5766 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 626 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.654 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5916 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8047 ; 2.085 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 734 ; 6.654 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 274 ;36.837 ;24.015 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 953 ;14.871 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;17.697 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 871 ; 0.181 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4578 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3657 ; 1.101 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5893 ; 1.847 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2259 ; 3.425 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2154 ; 5.230 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3T8Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067178. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : SI-III REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56296 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3N4E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60% V/V TACSIMATE PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.77850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 94.73050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.77850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 94.73050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 ARG A 368 REMARK 465 ARG B 368 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 367 CG CD OE1 NE2 REMARK 470 GLN B -1 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 11 -164.65 -129.17 REMARK 500 TYR A 34 127.05 92.86 REMARK 500 LEU A 289 34.85 -93.87 REMARK 500 SER A 290 -165.00 -71.59 REMARK 500 TYR B 34 124.62 90.65 REMARK 500 CYS B 152 45.75 35.01 REMARK 500 SER B 290 -168.50 -76.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 369 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 183 OD2 REMARK 620 2 GLU A 209 OE2 91.8 REMARK 620 3 HOH A 586 O 99.1 166.5 REMARK 620 4 HOH A 606 O 94.6 101.2 70.1 REMARK 620 5 HOH A 778 O 82.1 91.8 97.6 166.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 369 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 183 OD2 REMARK 620 2 GLU B 209 OE2 100.6 REMARK 620 3 GLU B 235 OE1 158.3 78.9 REMARK 620 4 HOH B 442 O 95.7 163.1 87.5 REMARK 620 5 HOH B 484 O 80.3 90.1 78.0 96.9 REMARK 620 6 HOH B 501 O 93.9 105.9 107.1 68.5 163.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI B 370 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-200881 RELATED DB: TARGETDB DBREF 3T8Q A 1 368 UNP A9D2J3 A9D2J3_9RHIZ 1 368 DBREF 3T8Q B 1 368 UNP A9D2J3 A9D2J3_9RHIZ 1 368 SEQADV 3T8Q GLN A -1 UNP A9D2J3 EXPRESSION TAG SEQADV 3T8Q SER A 0 UNP A9D2J3 EXPRESSION TAG SEQADV 3T8Q GLN B -1 UNP A9D2J3 EXPRESSION TAG SEQADV 3T8Q SER B 0 UNP A9D2J3 EXPRESSION TAG SEQRES 1 A 370 GLN SER MET LYS ILE ALA ASP ILE GLU THR PHE ALA ASN SEQRES 2 A 370 GLU PHE VAL CYS PHE VAL LYS VAL THR THR ASP SER GLY SEQRES 3 A 370 GLU THR GLY TRP GLY GLN VAL ALA PRO TYR TYR ALA ASP SEQRES 4 A 370 ILE THR ALA GLN VAL LEU HIS ARG GLN VAL ALA PRO TYR SEQRES 5 A 370 ALA LEU GLY LYS PRO ALA LEU ASP ILE ASP TYR LEU VAL SEQRES 6 A 370 ASP ILE ILE PRO GLU LYS GLU HIS LYS PHE PRO GLY SER SEQRES 7 A 370 TYR LEU ARG ARG ALA LEU GLY GLY LEU ASP THR ALA LEU SEQRES 8 A 370 TRP ASP LEU ARG GLY ARG LEU GLU GLY LYS PRO VAL CYS SEQRES 9 A 370 GLU LEU ILE GLY GLY THR PRO GLY THR VAL ARG ALA TYR SEQRES 10 A 370 GLY SER SER MET LYS ARG ASP ILE THR PRO LYS ASP GLU SEQRES 11 A 370 ALA ALA ARG LEU SER ARG LEU ARG ASP ARG PHE GLY PHE SEQRES 12 A 370 ASP ALA PHE LYS PHE ARG ILE GLY ALA GLU CYS GLY ARG SEQRES 13 A 370 GLY GLN ASP GLU TRP PRO GLY ARG THR GLU GLU ILE VAL SEQRES 14 A 370 PRO THR ILE ARG ALA ALA MET ASP ASP SER VAL ALA LEU SEQRES 15 A 370 LEU VAL ASP ALA ASN SER CYS TYR GLY PRO GLU GLN ALA SEQRES 16 A 370 ILE GLU VAL GLY LYS MET LEU GLU GLN ASN GLY ILE SER SEQRES 17 A 370 HIS TYR GLU GLU PRO CYS PRO TYR TRP GLU TYR GLU GLN SEQRES 18 A 370 THR GLN GLN VAL THR ASN ALA LEU SER ILE ASP VAL THR SEQRES 19 A 370 GLY GLY GLU GLN ASP CYS GLU LEU GLN ASN TRP ARG ARG SEQRES 20 A 370 MET ILE GLU MET LYS ALA VAL ASP ILE VAL GLN PRO ASP SEQRES 21 A 370 ILE CYS TYR LEU GLY GLY ILE THR ARG THR LEU ARG VAL SEQRES 22 A 370 ALA GLU MET ALA HIS LYS ALA GLY LEU PRO CYS THR PRO SEQRES 23 A 370 HIS ALA ALA ASN LEU SER MET VAL THR LEU PHE THR MET SEQRES 24 A 370 HIS LEU LEU ARG ALA ILE PRO ASN ALA GLY LYS TYR LEU SEQRES 25 A 370 GLU PHE SER ILE GLU GLY GLU ASP TYR TYR PRO TRP GLN SEQRES 26 A 370 ASP ASP LEU PHE VAL ALA SER PRO TYR GLU ILE VAL ASP SEQRES 27 A 370 GLY LYS ALA THR VAL THR ASP LEU PRO GLY TRP GLY VAL SEQRES 28 A 370 GLU VAL SER PRO THR TRP LEU GLU THR SER ALA HIS GLN SEQRES 29 A 370 ILE SER THR TRP GLN ARG SEQRES 1 B 370 GLN SER MET LYS ILE ALA ASP ILE GLU THR PHE ALA ASN SEQRES 2 B 370 GLU PHE VAL CYS PHE VAL LYS VAL THR THR ASP SER GLY SEQRES 3 B 370 GLU THR GLY TRP GLY GLN VAL ALA PRO TYR TYR ALA ASP SEQRES 4 B 370 ILE THR ALA GLN VAL LEU HIS ARG GLN VAL ALA PRO TYR SEQRES 5 B 370 ALA LEU GLY LYS PRO ALA LEU ASP ILE ASP TYR LEU VAL SEQRES 6 B 370 ASP ILE ILE PRO GLU LYS GLU HIS LYS PHE PRO GLY SER SEQRES 7 B 370 TYR LEU ARG ARG ALA LEU GLY GLY LEU ASP THR ALA LEU SEQRES 8 B 370 TRP ASP LEU ARG GLY ARG LEU GLU GLY LYS PRO VAL CYS SEQRES 9 B 370 GLU LEU ILE GLY GLY THR PRO GLY THR VAL ARG ALA TYR SEQRES 10 B 370 GLY SER SER MET LYS ARG ASP ILE THR PRO LYS ASP GLU SEQRES 11 B 370 ALA ALA ARG LEU SER ARG LEU ARG ASP ARG PHE GLY PHE SEQRES 12 B 370 ASP ALA PHE LYS PHE ARG ILE GLY ALA GLU CYS GLY ARG SEQRES 13 B 370 GLY GLN ASP GLU TRP PRO GLY ARG THR GLU GLU ILE VAL SEQRES 14 B 370 PRO THR ILE ARG ALA ALA MET ASP ASP SER VAL ALA LEU SEQRES 15 B 370 LEU VAL ASP ALA ASN SER CYS TYR GLY PRO GLU GLN ALA SEQRES 16 B 370 ILE GLU VAL GLY LYS MET LEU GLU GLN ASN GLY ILE SER SEQRES 17 B 370 HIS TYR GLU GLU PRO CYS PRO TYR TRP GLU TYR GLU GLN SEQRES 18 B 370 THR GLN GLN VAL THR ASN ALA LEU SER ILE ASP VAL THR SEQRES 19 B 370 GLY GLY GLU GLN ASP CYS GLU LEU GLN ASN TRP ARG ARG SEQRES 20 B 370 MET ILE GLU MET LYS ALA VAL ASP ILE VAL GLN PRO ASP SEQRES 21 B 370 ILE CYS TYR LEU GLY GLY ILE THR ARG THR LEU ARG VAL SEQRES 22 B 370 ALA GLU MET ALA HIS LYS ALA GLY LEU PRO CYS THR PRO SEQRES 23 B 370 HIS ALA ALA ASN LEU SER MET VAL THR LEU PHE THR MET SEQRES 24 B 370 HIS LEU LEU ARG ALA ILE PRO ASN ALA GLY LYS TYR LEU SEQRES 25 B 370 GLU PHE SER ILE GLU GLY GLU ASP TYR TYR PRO TRP GLN SEQRES 26 B 370 ASP ASP LEU PHE VAL ALA SER PRO TYR GLU ILE VAL ASP SEQRES 27 B 370 GLY LYS ALA THR VAL THR ASP LEU PRO GLY TRP GLY VAL SEQRES 28 B 370 GLU VAL SER PRO THR TRP LEU GLU THR SER ALA HIS GLN SEQRES 29 B 370 ILE SER THR TRP GLN ARG HET MG A 369 1 HET MLI A 370 7 HET MG B 369 1 HET MLI B 370 7 HETNAM MG MAGNESIUM ION HETNAM MLI MALONATE ION FORMUL 3 MG 2(MG 2+) FORMUL 4 MLI 2(C3 H2 O4 2-) FORMUL 7 HOH *626(H2 O) HELIX 1 1 TYR A 35 VAL A 47 1 13 HELIX 2 2 VAL A 47 LEU A 52 1 6 HELIX 3 3 ASP A 58 GLU A 70 1 13 HELIX 4 4 GLY A 75 GLY A 98 1 24 HELIX 5 5 PRO A 100 ILE A 105 1 6 HELIX 6 6 THR A 124 GLY A 140 1 17 HELIX 7 7 GLY A 161 MET A 174 1 14 HELIX 8 8 GLY A 189 ASN A 203 1 15 HELIX 9 9 GLU A 216 LEU A 227 1 12 HELIX 10 10 GLU A 239 MET A 249 1 11 HELIX 11 11 ASP A 258 GLY A 263 1 6 HELIX 12 12 GLY A 264 ALA A 278 1 15 HELIX 13 13 MET A 291 ARG A 301 1 11 HELIX 14 14 TYR A 320 ASP A 324 5 5 HELIX 15 15 SER A 352 THR A 358 1 7 HELIX 16 16 TYR B 35 VAL B 47 1 13 HELIX 17 17 VAL B 47 LEU B 52 1 6 HELIX 18 18 ASP B 58 GLU B 70 1 13 HELIX 19 19 GLY B 75 GLY B 98 1 24 HELIX 20 20 PRO B 100 ILE B 105 1 6 HELIX 21 21 THR B 124 GLY B 140 1 17 HELIX 22 22 GLY B 161 MET B 174 1 14 HELIX 23 23 GLY B 189 GLN B 202 1 14 HELIX 24 24 GLU B 216 LEU B 227 1 12 HELIX 25 25 GLU B 239 MET B 249 1 11 HELIX 26 26 ASP B 258 GLY B 263 1 6 HELIX 27 27 GLY B 264 ALA B 278 1 15 HELIX 28 28 SER B 290 ILE B 303 1 14 HELIX 29 29 TYR B 320 ASP B 324 5 5 HELIX 30 30 SER B 352 GLU B 357 1 6 SHEET 1 A 4 THR A 26 GLN A 30 0 SHEET 2 A 4 CYS A 15 THR A 21 -1 N VAL A 17 O GLY A 29 SHEET 3 A 4 ILE A 3 ALA A 10 -1 N GLU A 7 O LYS A 18 SHEET 4 A 4 ALA A 360 THR A 365 -1 O GLN A 362 N THR A 8 SHEET 1 B 7 ILE A 254 VAL A 255 0 SHEET 2 B 7 ASP A 230 GLY A 233 1 N GLY A 233 O ILE A 254 SHEET 3 B 7 HIS A 207 GLU A 209 1 N TYR A 208 O ASP A 230 SHEET 4 B 7 ALA A 179 ASP A 183 1 N VAL A 182 O GLU A 209 SHEET 5 B 7 ALA A 143 ARG A 147 1 N PHE A 144 O LEU A 181 SHEET 6 B 7 GLY A 110 SER A 117 1 N GLY A 116 O ALA A 143 SHEET 7 B 7 LEU A 310 SER A 313 1 O LEU A 310 N ARG A 113 SHEET 1 C 7 ILE A 254 VAL A 255 0 SHEET 2 C 7 ASP A 230 GLY A 233 1 N GLY A 233 O ILE A 254 SHEET 3 C 7 HIS A 207 GLU A 209 1 N TYR A 208 O ASP A 230 SHEET 4 C 7 ALA A 179 ASP A 183 1 N VAL A 182 O GLU A 209 SHEET 5 C 7 ALA A 143 ARG A 147 1 N PHE A 144 O LEU A 181 SHEET 6 C 7 GLY A 110 SER A 117 1 N GLY A 116 O ALA A 143 SHEET 7 C 7 LYS A 338 VAL A 341 -1 O VAL A 341 N GLY A 110 SHEET 1 D 4 THR B 26 GLN B 30 0 SHEET 2 D 4 CYS B 15 THR B 21 -1 N VAL B 17 O GLY B 29 SHEET 3 D 4 ILE B 3 ALA B 10 -1 N GLU B 7 O LYS B 18 SHEET 4 D 4 ALA B 360 THR B 365 -1 O ALA B 360 N ALA B 10 SHEET 1 E 7 ILE B 254 VAL B 255 0 SHEET 2 E 7 ASP B 230 GLY B 233 1 N GLY B 233 O ILE B 254 SHEET 3 E 7 ILE B 205 GLU B 209 1 N TYR B 208 O ASP B 230 SHEET 4 E 7 ALA B 179 ASP B 183 1 N LEU B 180 O SER B 206 SHEET 5 E 7 ALA B 143 ARG B 147 1 N PHE B 144 O LEU B 181 SHEET 6 E 7 GLY B 110 SER B 117 1 N GLY B 116 O LYS B 145 SHEET 7 E 7 LEU B 310 SER B 313 1 O LEU B 310 N ARG B 113 SHEET 1 F 7 ILE B 254 VAL B 255 0 SHEET 2 F 7 ASP B 230 GLY B 233 1 N GLY B 233 O ILE B 254 SHEET 3 F 7 ILE B 205 GLU B 209 1 N TYR B 208 O ASP B 230 SHEET 4 F 7 ALA B 179 ASP B 183 1 N LEU B 180 O SER B 206 SHEET 5 F 7 ALA B 143 ARG B 147 1 N PHE B 144 O LEU B 181 SHEET 6 F 7 GLY B 110 SER B 117 1 N GLY B 116 O LYS B 145 SHEET 7 F 7 LYS B 338 VAL B 341 -1 O VAL B 341 N GLY B 110 LINK OD2 ASP A 183 MG MG A 369 1555 1555 2.06 LINK OE2 GLU A 209 MG MG A 369 1555 1555 2.41 LINK MG MG A 369 O HOH A 586 1555 1555 2.37 LINK MG MG A 369 O HOH A 606 1555 1555 2.78 LINK MG MG A 369 O HOH A 778 1555 1555 2.19 LINK OD2 ASP B 183 MG MG B 369 1555 1555 2.28 LINK OE2 GLU B 209 MG MG B 369 1555 1555 2.41 LINK OE1 GLU B 235 MG MG B 369 1555 1555 2.41 LINK MG MG B 369 O HOH B 442 1555 1555 2.47 LINK MG MG B 369 O HOH B 484 1555 1555 2.46 LINK MG MG B 369 O HOH B 501 1555 1555 2.80 SITE 1 AC1 6 ASP A 183 GLU A 209 GLU A 235 HOH A 586 SITE 2 AC1 6 HOH A 606 HOH A 778 SITE 1 AC2 5 ARG A 79 GLU A 239 GLN A 241 TYR B 214 SITE 2 AC2 5 TRP B 215 SITE 1 AC3 6 ASP B 183 GLU B 209 GLU B 235 HOH B 442 SITE 2 AC3 6 HOH B 484 HOH B 501 SITE 1 AC4 9 TYR A 214 PRO B 67 PRO B 74 ARG B 79 SITE 2 AC4 9 GLU B 239 GLN B 241 HOH B 473 HOH B 545 SITE 3 AC4 9 HOH B 757 CRYST1 75.557 189.461 57.995 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013235 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005278 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017243 0.00000