HEADER METAL BINDING PROTEIN 03-AUG-11 3T9O TITLE REGULATORY CZB DOMAIN OF DGCZ COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIGUANYLATE CYCLASE DGCZ; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-126; COMPND 5 SYNONYM: DGC; COMPND 6 EC: 2.7.7.65; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: B1535, JW1528, YDEG, YDEH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS DIGUANYLATE CYCLASE, PUTATIVE ZINC SENSOR, CZB DOMAIN, METAL BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.ZAEHRINGER,T.SCHIRMER REVDAT 4 28-FEB-24 3T9O 1 REMARK SEQADV LINK REVDAT 3 27-APR-16 3T9O 1 COMPND TITLE REVDAT 2 13-APR-16 3T9O 1 JRNL REVDAT 1 05-SEP-12 3T9O 0 JRNL AUTH F.ZAHRINGER,E.LACANNA,U.JENAL,T.SCHIRMER,A.BOEHM JRNL TITL STRUCTURE AND SIGNALING MECHANISM OF A ZINC-SENSORY JRNL TITL 2 DIGUANYLATE CYCLASE. JRNL REF STRUCTURE V. 21 1149 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23769666 JRNL DOI 10.1016/J.STR.2013.04.026 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 698 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 980 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1837 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.50000 REMARK 3 B22 (A**2) : -1.31000 REMARK 3 B33 (A**2) : -1.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.271 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.147 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.787 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1897 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1196 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2573 ; 1.206 ; 1.913 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2903 ; 1.521 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 225 ; 4.374 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;34.380 ;24.184 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 293 ;14.613 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;30.011 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 282 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2117 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 406 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1133 ; 0.578 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 458 ; 0.111 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1809 ; 1.102 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 764 ; 1.623 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 764 ; 2.556 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 135 B 174 REMARK 3 RESIDUE RANGE : A 135 A 155 REMARK 3 RESIDUE RANGE : B 502 B 502 REMARK 3 RESIDUE RANGE : A 502 A 502 REMARK 3 RESIDUE RANGE : B 7 B 126 REMARK 3 RESIDUE RANGE : A 5 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4987 37.0022 8.5617 REMARK 3 T TENSOR REMARK 3 T11: 0.0832 T22: 0.0306 REMARK 3 T33: 0.0791 T12: 0.0087 REMARK 3 T13: 0.0120 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.8160 L22: 0.5372 REMARK 3 L33: 1.6811 L12: 0.0042 REMARK 3 L13: 0.4005 L23: -0.0408 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: -0.1350 S13: 0.0179 REMARK 3 S21: 0.0870 S22: 0.0369 S23: -0.0066 REMARK 3 S31: 0.0708 S32: -0.0598 S33: -0.0620 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3T9O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27196 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : 0.05900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : 0.38200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.710 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM AMMONIUM TARTRATE, 12.5% PEG REMARK 280 3350, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.73000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.13000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.73000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.13000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 ILE A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 4 REMARK 465 ALA A 38 REMARK 465 SER A 39 REMARK 465 LYS A 40 REMARK 465 PRO A 41 REMARK 465 GLU A 42 REMARK 465 ILE A 43 REMARK 465 THR A 44 REMARK 465 ASP A 45 REMARK 465 ASN A 46 REMARK 465 HIS A 47 REMARK 465 SER A 48 REMARK 465 TYR A 49 REMARK 465 GLY A 50 REMARK 465 LEU A 51 REMARK 465 LEU A 127 REMARK 465 GLU A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 133 REMARK 465 HIS A 134 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 ILE B 2 REMARK 465 LYS B 3 REMARK 465 LYS B 4 REMARK 465 THR B 5 REMARK 465 THR B 6 REMARK 465 LEU B 127 REMARK 465 GLU B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 HIS B 134 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 108 CG CD OE1 OE2 REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 GLU B 108 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 53 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 39 -159.06 43.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 22 NE2 REMARK 620 2 CYS A 52 SG 118.2 REMARK 620 3 HIS A 79 NE2 101.5 103.0 REMARK 620 4 HIS A 83 NE2 110.2 117.7 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 22 NE2 REMARK 620 2 CYS B 52 SG 125.3 REMARK 620 3 HIS B 79 NE2 95.8 97.5 REMARK 620 4 HIS B 83 NE2 105.9 122.7 101.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TVK RELATED DB: PDB DBREF 3T9O A 2 126 UNP P31129 YDEH_ECOLI 2 126 DBREF 3T9O B 2 126 UNP P31129 YDEH_ECOLI 2 126 SEQADV 3T9O MET A 0 UNP P31129 EXPRESSION TAG SEQADV 3T9O ALA A 1 UNP P31129 EXPRESSION TAG SEQADV 3T9O LEU A 127 UNP P31129 EXPRESSION TAG SEQADV 3T9O GLU A 128 UNP P31129 EXPRESSION TAG SEQADV 3T9O HIS A 129 UNP P31129 EXPRESSION TAG SEQADV 3T9O HIS A 130 UNP P31129 EXPRESSION TAG SEQADV 3T9O HIS A 131 UNP P31129 EXPRESSION TAG SEQADV 3T9O HIS A 132 UNP P31129 EXPRESSION TAG SEQADV 3T9O HIS A 133 UNP P31129 EXPRESSION TAG SEQADV 3T9O HIS A 134 UNP P31129 EXPRESSION TAG SEQADV 3T9O MET B 0 UNP P31129 EXPRESSION TAG SEQADV 3T9O ALA B 1 UNP P31129 EXPRESSION TAG SEQADV 3T9O LEU B 127 UNP P31129 EXPRESSION TAG SEQADV 3T9O GLU B 128 UNP P31129 EXPRESSION TAG SEQADV 3T9O HIS B 129 UNP P31129 EXPRESSION TAG SEQADV 3T9O HIS B 130 UNP P31129 EXPRESSION TAG SEQADV 3T9O HIS B 131 UNP P31129 EXPRESSION TAG SEQADV 3T9O HIS B 132 UNP P31129 EXPRESSION TAG SEQADV 3T9O HIS B 133 UNP P31129 EXPRESSION TAG SEQADV 3T9O HIS B 134 UNP P31129 EXPRESSION TAG SEQRES 1 A 135 MET ALA ILE LYS LYS THR THR GLU ILE ASP ALA ILE LEU SEQRES 2 A 135 LEU ASN LEU ASN LYS ALA ILE ASP ALA HIS TYR GLN TRP SEQRES 3 A 135 LEU VAL SER MET PHE HIS SER VAL VAL ALA ARG ASP ALA SEQRES 4 A 135 SER LYS PRO GLU ILE THR ASP ASN HIS SER TYR GLY LEU SEQRES 5 A 135 CYS GLN PHE GLY ARG TRP ILE ASP HIS LEU GLY PRO LEU SEQRES 6 A 135 ASP ASN ASP GLU LEU PRO TYR VAL ARG LEU MET ASP SER SEQRES 7 A 135 ALA HIS GLN HIS MET HIS ASN CYS GLY ARG GLU LEU MET SEQRES 8 A 135 LEU ALA ILE VAL GLU ASN HIS TRP GLN ASP ALA HIS PHE SEQRES 9 A 135 ASP ALA PHE GLN GLU GLY LEU LEU SER PHE THR ALA ALA SEQRES 10 A 135 LEU THR ASP TYR LYS ILE TYR LEU LEU THR LEU GLU HIS SEQRES 11 A 135 HIS HIS HIS HIS HIS SEQRES 1 B 135 MET ALA ILE LYS LYS THR THR GLU ILE ASP ALA ILE LEU SEQRES 2 B 135 LEU ASN LEU ASN LYS ALA ILE ASP ALA HIS TYR GLN TRP SEQRES 3 B 135 LEU VAL SER MET PHE HIS SER VAL VAL ALA ARG ASP ALA SEQRES 4 B 135 SER LYS PRO GLU ILE THR ASP ASN HIS SER TYR GLY LEU SEQRES 5 B 135 CYS GLN PHE GLY ARG TRP ILE ASP HIS LEU GLY PRO LEU SEQRES 6 B 135 ASP ASN ASP GLU LEU PRO TYR VAL ARG LEU MET ASP SER SEQRES 7 B 135 ALA HIS GLN HIS MET HIS ASN CYS GLY ARG GLU LEU MET SEQRES 8 B 135 LEU ALA ILE VAL GLU ASN HIS TRP GLN ASP ALA HIS PHE SEQRES 9 B 135 ASP ALA PHE GLN GLU GLY LEU LEU SER PHE THR ALA ALA SEQRES 10 B 135 LEU THR ASP TYR LYS ILE TYR LEU LEU THR LEU GLU HIS SEQRES 11 B 135 HIS HIS HIS HIS HIS HET ZN A 502 1 HET ZN B 502 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *61(H2 O) HELIX 1 1 THR A 5 ARG A 36 1 32 HELIX 2 2 CYS A 52 HIS A 60 1 9 HELIX 3 3 GLU A 68 GLU A 95 1 28 HELIX 4 4 GLN A 99 THR A 126 1 28 HELIX 5 5 GLU B 7 ARG B 36 1 30 HELIX 6 6 LYS B 40 ASP B 45 1 6 HELIX 7 7 HIS B 47 LEU B 51 5 5 HELIX 8 8 CYS B 52 HIS B 60 1 9 HELIX 9 9 GLU B 68 GLU B 95 1 28 HELIX 10 10 GLN B 99 THR B 126 1 28 LINK NE2 HIS A 22 ZN ZN A 502 1555 1555 2.11 LINK SG CYS A 52 ZN ZN A 502 1555 1555 2.32 LINK NE2 HIS A 79 ZN ZN A 502 1555 1555 2.16 LINK NE2 HIS A 83 ZN ZN A 502 1555 1555 2.17 LINK NE2 HIS B 22 ZN ZN B 502 1555 1555 2.23 LINK SG CYS B 52 ZN ZN B 502 1555 1555 2.34 LINK NE2 HIS B 79 ZN ZN B 502 1555 1555 2.20 LINK NE2 HIS B 83 ZN ZN B 502 1555 1555 2.15 SITE 1 AC1 4 HIS A 22 CYS A 52 HIS A 79 HIS A 83 SITE 1 AC2 4 HIS B 22 CYS B 52 HIS B 79 HIS B 83 CRYST1 121.460 60.260 38.460 90.00 99.04 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008233 0.000000 0.001310 0.00000 SCALE2 0.000000 0.016595 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026328 0.00000