HEADER ISOMERASE 03-AUG-11 3T9P TITLE CRYSTAL STRUCTURE OF A PUTATIVE MANDELATE RACEMASE/MUCONATE TITLE 2 LACTONIZING ENZYME FAMILY PROTEIN FROM ROSEOVARIUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME FAMILY COMPND 3 PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROSEOVARIUS SP. TM1035; SOURCE 3 ORGANISM_TAXID: 391613; SOURCE 4 STRAIN: TM1035; SOURCE 5 GENE: RTM1035_01290; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.AGARWAL,S.CHAMALA,B.EVANS,R.FOTI,A.GIZZI,B.HILLERICH,A.KAR, AUTHOR 2 J.LAFLEUR,R.SEIDEL,G.VILLIGAS,W.ZENCHECK,S.C.ALMO,S.SWAMINATHAN,NEW AUTHOR 3 YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 2 13-SEP-23 3T9P 1 REMARK SEQADV REVDAT 1 17-AUG-11 3T9P 0 JRNL AUTH R.AGARWAL,S.C.ALMO,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE MANDELATE RACEMASE/MUCONATE JRNL TITL 2 LACTONIZING ENZYME FAMILY PROTEIN FROM ROSEOVARIUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 67733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3617 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4912 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 268 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5679 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.909 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5856 ; 0.031 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7961 ; 2.179 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 731 ; 6.980 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 275 ;35.076 ;23.309 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 910 ;13.731 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;16.164 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 848 ; 0.178 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4556 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3635 ; 1.465 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5811 ; 2.310 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2221 ; 3.852 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2150 ; 5.853 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3T9P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067213. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : SI-III REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71641 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.60 REMARK 200 R MERGE FOR SHELL (I) : 0.23300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, CCP4 REMARK 200 STARTING MODEL: 3T8Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NACL, 0.1M HEPES PH 7.5, 1.6M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 54.79700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.13550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.68100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.13550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 54.79700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.68100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 VAL A 11 REMARK 465 ASP A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 THR A 15 REMARK 465 GLU A 16 REMARK 465 ASN A 17 REMARK 465 LEU A 18 REMARK 465 TYR A 19 REMARK 465 PHE A 20 REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 VAL B 11 REMARK 465 ASP B 12 REMARK 465 LEU B 13 REMARK 465 GLY B 14 REMARK 465 THR B 15 REMARK 465 GLU B 16 REMARK 465 ASN B 17 REMARK 465 LEU B 18 REMARK 465 TYR B 19 REMARK 465 PHE B 20 REMARK 465 GLN B 21 REMARK 465 SER B 22 REMARK 465 ARG B 388 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 340 CG CD OE1 OE2 REMARK 470 GLU A 357 CG CD OE1 OE2 REMARK 470 ARG A 388 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 362 CD1 REMARK 470 GLU B 372 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 56 122.04 84.81 REMARK 500 ASN A 207 56.65 30.70 REMARK 500 GLU A 232 63.69 34.11 REMARK 500 GLN A 278 59.44 -141.23 REMARK 500 LEU A 311 36.51 -96.42 REMARK 500 SER A 312 -162.94 -74.02 REMARK 500 TYR A 342 71.00 -119.96 REMARK 500 ASN B 33 -157.21 -121.17 REMARK 500 TYR B 56 130.80 86.05 REMARK 500 ASP B 177 -1.34 77.42 REMARK 500 ASN B 207 57.70 28.31 REMARK 500 LEU B 311 34.04 -96.10 REMARK 500 SER B 312 -169.25 -72.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 392 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-200689 RELATED DB: TARGETDB DBREF 3T9P A 23 388 UNP A6E1Q0 A6E1Q0_9RHOB 1 366 DBREF 3T9P B 23 388 UNP A6E1Q0 A6E1Q0_9RHOB 1 366 SEQADV 3T9P MET A 1 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P HIS A 2 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P HIS A 3 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P HIS A 4 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P HIS A 5 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P HIS A 6 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P HIS A 7 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P SER A 8 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P SER A 9 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P GLY A 10 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P VAL A 11 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P ASP A 12 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P LEU A 13 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P GLY A 14 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P THR A 15 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P GLU A 16 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P ASN A 17 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P LEU A 18 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P TYR A 19 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P PHE A 20 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P GLN A 21 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P SER A 22 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P MET B 1 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P HIS B 2 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P HIS B 3 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P HIS B 4 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P HIS B 5 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P HIS B 6 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P HIS B 7 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P SER B 8 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P SER B 9 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P GLY B 10 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P VAL B 11 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P ASP B 12 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P LEU B 13 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P GLY B 14 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P THR B 15 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P GLU B 16 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P ASN B 17 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P LEU B 18 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P TYR B 19 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P PHE B 20 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P GLN B 21 UNP A6E1Q0 EXPRESSION TAG SEQADV 3T9P SER B 22 UNP A6E1Q0 EXPRESSION TAG SEQRES 1 A 388 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 388 GLY THR GLU ASN LEU TYR PHE GLN SER MET ARG ILE ALA SEQRES 3 A 388 ARG LEU GLU THR PHE CYS ASN GLU PHE VAL GLY PHE VAL SEQRES 4 A 388 ARG VAL THR THR ASP SER GLY ALA GLN GLY TRP GLY GLN SEQRES 5 A 388 VAL SER THR TYR ASN ALA ASP ILE THR CYS THR ILE PHE SEQRES 6 A 388 HIS ARG GLN ILE ALA PRO HIS ALA LEU GLY THR ASP ALA SEQRES 7 A 388 LEU ASP PHE ALA ASP THR LEU ASP LEU ILE TYR GLU ARG SEQRES 8 A 388 GLU LEU LYS TYR PRO GLY SER TYR LEU ARG ARG ALA MET SEQRES 9 A 388 THR GLY LEU ASP THR ALA LEU TRP ASP MET ARG GLY LYS SEQRES 10 A 388 LEU GLU GLY LYS PRO VAL ALA THR LEU LEU GLY GLY SER SEQRES 11 A 388 PRO GLY PRO VAL ARG ALA TYR ALA SER SER MET ARG ARG SEQRES 12 A 388 ASP ILE THR PRO GLU ASP GLU ALA GLU ARG PHE CYS ARG SEQRES 13 A 388 LEU ARG ASP ASP LYS GLY PHE THR ALA PHE LYS TRP ARG SEQRES 14 A 388 VAL GLY ALA GLU ALA GLY ARG ASP HIS ASP GLU TRP PRO SEQRES 15 A 388 GLY ARG THR GLU ALA VAL VAL PRO THR VAL SER ARG ALA SEQRES 16 A 388 LEU GLY ASP GLY ILE GLU LYS LEU VAL ASP GLY ASN SER SEQRES 17 A 388 CYS TYR SER PRO ALA ARG ALA ILE GLU VAL GLY LYS LEU SEQRES 18 A 388 LEU GLN ASP ASN GLY ILE GLY HIS PHE GLU GLU PRO CYS SEQRES 19 A 388 PRO TYR TRP GLU TYR ASP GLN THR ALA ALA VAL ARG ALA SEQRES 20 A 388 ALA LEU LEU LEU ASP VAL ALA GLY GLY GLU GLN ASP CYS SEQRES 21 A 388 GLU TYR SER SER TRP GLN LEU MET LEU ASP ARG GLY ALA SEQRES 22 A 388 VAL ASP ILE VAL GLN PRO ASP VAL MET TYR MET GLY GLY SEQRES 23 A 388 MET HIS ARG THR LEU GLN VAL CYS GLN MET ALA ALA ARG SEQRES 24 A 388 ALA GLY LEU PRO VAL THR PRO HIS ALA ALA ASN LEU SER SEQRES 25 A 388 LEU VAL THR MET CYS THR MET HIS LEU LEU ARG ALA ILE SEQRES 26 A 388 PRO ASN ALA GLY LYS TYR LEU GLU PHE SER ILE GLU GLY SEQRES 27 A 388 PRO GLU TYR TYR PRO TRP GLN GLU GLY LEU PHE LEU GLY SEQRES 28 A 388 ASP PRO TYR ARG ILE GLU GLY GLY GLN ALA ILE VAL THR SEQRES 29 A 388 ASP ALA PRO GLY TRP GLY VAL GLU ILE SER PRO THR TRP SEQRES 30 A 388 LEU ASP SER ALA THR TYR GLN VAL SER GLU ARG SEQRES 1 B 388 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 388 GLY THR GLU ASN LEU TYR PHE GLN SER MET ARG ILE ALA SEQRES 3 B 388 ARG LEU GLU THR PHE CYS ASN GLU PHE VAL GLY PHE VAL SEQRES 4 B 388 ARG VAL THR THR ASP SER GLY ALA GLN GLY TRP GLY GLN SEQRES 5 B 388 VAL SER THR TYR ASN ALA ASP ILE THR CYS THR ILE PHE SEQRES 6 B 388 HIS ARG GLN ILE ALA PRO HIS ALA LEU GLY THR ASP ALA SEQRES 7 B 388 LEU ASP PHE ALA ASP THR LEU ASP LEU ILE TYR GLU ARG SEQRES 8 B 388 GLU LEU LYS TYR PRO GLY SER TYR LEU ARG ARG ALA MET SEQRES 9 B 388 THR GLY LEU ASP THR ALA LEU TRP ASP MET ARG GLY LYS SEQRES 10 B 388 LEU GLU GLY LYS PRO VAL ALA THR LEU LEU GLY GLY SER SEQRES 11 B 388 PRO GLY PRO VAL ARG ALA TYR ALA SER SER MET ARG ARG SEQRES 12 B 388 ASP ILE THR PRO GLU ASP GLU ALA GLU ARG PHE CYS ARG SEQRES 13 B 388 LEU ARG ASP ASP LYS GLY PHE THR ALA PHE LYS TRP ARG SEQRES 14 B 388 VAL GLY ALA GLU ALA GLY ARG ASP HIS ASP GLU TRP PRO SEQRES 15 B 388 GLY ARG THR GLU ALA VAL VAL PRO THR VAL SER ARG ALA SEQRES 16 B 388 LEU GLY ASP GLY ILE GLU LYS LEU VAL ASP GLY ASN SER SEQRES 17 B 388 CYS TYR SER PRO ALA ARG ALA ILE GLU VAL GLY LYS LEU SEQRES 18 B 388 LEU GLN ASP ASN GLY ILE GLY HIS PHE GLU GLU PRO CYS SEQRES 19 B 388 PRO TYR TRP GLU TYR ASP GLN THR ALA ALA VAL ARG ALA SEQRES 20 B 388 ALA LEU LEU LEU ASP VAL ALA GLY GLY GLU GLN ASP CYS SEQRES 21 B 388 GLU TYR SER SER TRP GLN LEU MET LEU ASP ARG GLY ALA SEQRES 22 B 388 VAL ASP ILE VAL GLN PRO ASP VAL MET TYR MET GLY GLY SEQRES 23 B 388 MET HIS ARG THR LEU GLN VAL CYS GLN MET ALA ALA ARG SEQRES 24 B 388 ALA GLY LEU PRO VAL THR PRO HIS ALA ALA ASN LEU SER SEQRES 25 B 388 LEU VAL THR MET CYS THR MET HIS LEU LEU ARG ALA ILE SEQRES 26 B 388 PRO ASN ALA GLY LYS TYR LEU GLU PHE SER ILE GLU GLY SEQRES 27 B 388 PRO GLU TYR TYR PRO TRP GLN GLU GLY LEU PHE LEU GLY SEQRES 28 B 388 ASP PRO TYR ARG ILE GLU GLY GLY GLN ALA ILE VAL THR SEQRES 29 B 388 ASP ALA PRO GLY TRP GLY VAL GLU ILE SER PRO THR TRP SEQRES 30 B 388 LEU ASP SER ALA THR TYR GLN VAL SER GLU ARG HET SO4 A 389 5 HET SO4 A 390 5 HET FMT A 391 3 HET SO4 B 389 5 HET SO4 B 390 5 HET FMT B 391 3 HET GOL B 392 6 HETNAM SO4 SULFATE ION HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 FMT 2(C H2 O2) FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *620(H2 O) HELIX 1 1 ASN A 57 ILE A 69 1 13 HELIX 2 2 ILE A 69 LEU A 74 1 6 HELIX 3 3 PHE A 81 GLU A 92 1 12 HELIX 4 4 GLY A 97 GLY A 120 1 24 HELIX 5 5 PRO A 122 LEU A 127 1 6 HELIX 6 6 THR A 146 GLY A 162 1 17 HELIX 7 7 GLY A 183 GLY A 197 1 15 HELIX 8 8 SER A 211 ASN A 225 1 15 HELIX 9 9 GLU A 238 LEU A 249 1 12 HELIX 10 10 GLU A 261 ARG A 271 1 11 HELIX 11 11 ASP A 280 GLY A 285 1 6 HELIX 12 12 GLY A 286 ALA A 300 1 15 HELIX 13 13 LEU A 313 ARG A 323 1 11 HELIX 14 14 TYR A 342 GLU A 346 5 5 HELIX 15 15 SER A 374 SER A 380 1 7 HELIX 16 16 ASN B 57 ILE B 69 1 13 HELIX 17 17 ILE B 69 LEU B 74 1 6 HELIX 18 18 PHE B 81 GLU B 92 1 12 HELIX 19 19 GLY B 97 GLY B 120 1 24 HELIX 20 20 PRO B 122 LEU B 127 1 6 HELIX 21 21 THR B 146 GLY B 162 1 17 HELIX 22 22 GLY B 183 GLY B 197 1 15 HELIX 23 23 SER B 211 ASN B 225 1 15 HELIX 24 24 GLU B 238 LEU B 249 1 12 HELIX 25 25 GLU B 261 ARG B 271 1 11 HELIX 26 26 ASP B 280 GLY B 285 1 6 HELIX 27 27 GLY B 286 ALA B 300 1 15 HELIX 28 28 SER B 312 ARG B 323 1 12 HELIX 29 29 TYR B 342 GLU B 346 5 5 HELIX 30 30 SER B 374 ALA B 381 1 8 SHEET 1 A 4 GLN A 48 GLN A 52 0 SHEET 2 A 4 GLY A 37 THR A 43 -1 N VAL A 39 O GLY A 51 SHEET 3 A 4 ILE A 25 CYS A 32 -1 N GLU A 29 O ARG A 40 SHEET 4 A 4 THR A 382 GLU A 387 -1 O THR A 382 N CYS A 32 SHEET 1 B 7 ILE A 276 VAL A 277 0 SHEET 2 B 7 ASP A 252 GLY A 255 1 N GLY A 255 O ILE A 276 SHEET 3 B 7 HIS A 229 GLU A 231 1 N PHE A 230 O ASP A 252 SHEET 4 B 7 GLU A 201 ASP A 205 1 N VAL A 204 O GLU A 231 SHEET 5 B 7 ALA A 165 ARG A 169 1 N PHE A 166 O LEU A 203 SHEET 6 B 7 GLY A 132 SER A 139 1 N ALA A 138 O LYS A 167 SHEET 7 B 7 LEU A 332 SER A 335 1 O LEU A 332 N TYR A 137 SHEET 1 C 7 ILE A 276 VAL A 277 0 SHEET 2 C 7 ASP A 252 GLY A 255 1 N GLY A 255 O ILE A 276 SHEET 3 C 7 HIS A 229 GLU A 231 1 N PHE A 230 O ASP A 252 SHEET 4 C 7 GLU A 201 ASP A 205 1 N VAL A 204 O GLU A 231 SHEET 5 C 7 ALA A 165 ARG A 169 1 N PHE A 166 O LEU A 203 SHEET 6 C 7 GLY A 132 SER A 139 1 N ALA A 138 O LYS A 167 SHEET 7 C 7 GLN A 360 VAL A 363 -1 O VAL A 363 N GLY A 132 SHEET 1 D 4 GLN B 48 GLN B 52 0 SHEET 2 D 4 GLY B 37 THR B 43 -1 N VAL B 39 O GLY B 51 SHEET 3 D 4 ILE B 25 CYS B 32 -1 N ALA B 26 O THR B 42 SHEET 4 D 4 THR B 382 SER B 386 -1 O THR B 382 N CYS B 32 SHEET 1 E 7 ILE B 276 VAL B 277 0 SHEET 2 E 7 ASP B 252 GLY B 255 1 N GLY B 255 O ILE B 276 SHEET 3 E 7 HIS B 229 GLU B 231 1 N PHE B 230 O ASP B 252 SHEET 4 E 7 GLU B 201 ASP B 205 1 N VAL B 204 O GLU B 231 SHEET 5 E 7 ALA B 165 ARG B 169 1 N PHE B 166 O LEU B 203 SHEET 6 E 7 GLY B 132 SER B 139 1 N ALA B 138 O LYS B 167 SHEET 7 E 7 LEU B 332 SER B 335 1 O PHE B 334 N SER B 139 SHEET 1 F 7 ILE B 276 VAL B 277 0 SHEET 2 F 7 ASP B 252 GLY B 255 1 N GLY B 255 O ILE B 276 SHEET 3 F 7 HIS B 229 GLU B 231 1 N PHE B 230 O ASP B 252 SHEET 4 F 7 GLU B 201 ASP B 205 1 N VAL B 204 O GLU B 231 SHEET 5 F 7 ALA B 165 ARG B 169 1 N PHE B 166 O LEU B 203 SHEET 6 F 7 GLY B 132 SER B 139 1 N ALA B 138 O LYS B 167 SHEET 7 F 7 GLN B 360 VAL B 363 -1 O VAL B 363 N GLY B 132 SITE 1 AC1 1 ARG A 323 SITE 1 AC2 3 ARG A 67 GLN A 384 HOH A 560 SITE 1 AC3 4 HIS B 178 ASP B 179 PRO B 182 HOH B 596 SITE 1 AC4 2 PRO B 133 ARG B 323 SITE 1 AC5 4 LYS A 94 GLU B 257 TYR B 283 HIS B 307 SITE 1 AC6 5 GLU A 257 TYR A 283 HIS A 307 ALA A 309 SITE 2 AC6 5 LYS B 94 SITE 1 AC7 10 ARG A 24 ASP A 77 HOH A 620 HOH A 629 SITE 2 AC7 10 ASP B 83 THR B 84 LEU B 87 HOH B 425 SITE 3 AC7 10 HOH B 444 HOH B 523 CRYST1 109.594 91.362 100.271 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009125 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009973 0.00000