HEADER OXIDOREDUCTASE 03-AUG-11 3T9W TITLE SMALL LACCASE FROM AMYCOLATOPSIS SP. ATCC 39116 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL LACCASE, MULTI-COPPER OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.10.3.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS SP. ATCC 39116; SOURCE 3 ORGANISM_TAXID: 385957; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS TWO-DOMAIN COPPER OXIDASE, OXIDASE, CU-BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.LUKK,S.MAJUMDAR,J.A.GERLT,S.K.NAIR REVDAT 5 13-SEP-23 3T9W 1 REMARK LINK REVDAT 4 25-OCT-17 3T9W 1 REMARK REVDAT 3 01-OCT-14 3T9W 1 JRNL REVDAT 2 11-JUN-14 3T9W 1 JRNL REVDAT 1 29-AUG-12 3T9W 0 JRNL AUTH S.MAJUMDAR,T.LUKK,J.O.SOLBIATI,S.BAUER,S.K.NAIR,J.E.CRONAN, JRNL AUTH 2 J.A.GERLT JRNL TITL ROLES OF SMALL LACCASES FROM STREPTOMYCES IN LIGNIN JRNL TITL 2 DEGRADATION. JRNL REF BIOCHEMISTRY V. 53 4047 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 24870309 JRNL DOI 10.1021/BI500285T REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_764 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 66780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6589 - 4.3121 1.00 2786 146 0.1546 0.1862 REMARK 3 2 4.3121 - 3.4285 1.00 2688 142 0.1299 0.1383 REMARK 3 3 3.4285 - 2.9969 1.00 2690 141 0.1583 0.2119 REMARK 3 4 2.9969 - 2.7236 1.00 2651 140 0.1802 0.2116 REMARK 3 5 2.7236 - 2.5288 1.00 2682 141 0.1794 0.2230 REMARK 3 6 2.5288 - 2.3800 1.00 2644 139 0.1736 0.2025 REMARK 3 7 2.3800 - 2.2610 1.00 2643 139 0.1736 0.2041 REMARK 3 8 2.2610 - 2.1627 1.00 2636 139 0.1653 0.1930 REMARK 3 9 2.1627 - 2.0795 1.00 2628 138 0.1630 0.1719 REMARK 3 10 2.0795 - 2.0079 1.00 2654 140 0.1736 0.2048 REMARK 3 11 2.0079 - 1.9451 1.00 2628 138 0.1788 0.2343 REMARK 3 12 1.9451 - 1.8896 1.00 2636 139 0.1859 0.1984 REMARK 3 13 1.8896 - 1.8399 1.00 2631 138 0.1837 0.2094 REMARK 3 14 1.8399 - 1.7950 1.00 2634 139 0.1878 0.2116 REMARK 3 15 1.7950 - 1.7542 1.00 2618 138 0.1974 0.2376 REMARK 3 16 1.7542 - 1.7169 1.00 2617 138 0.2033 0.2320 REMARK 3 17 1.7169 - 1.6826 1.00 2655 139 0.2098 0.2408 REMARK 3 18 1.6826 - 1.6509 1.00 2599 137 0.2183 0.2424 REMARK 3 19 1.6509 - 1.6214 1.00 2621 138 0.2272 0.2595 REMARK 3 20 1.6214 - 1.5939 1.00 2621 138 0.2314 0.2884 REMARK 3 21 1.5939 - 1.5682 1.00 2626 138 0.2291 0.2614 REMARK 3 22 1.5682 - 1.5441 1.00 2631 139 0.2440 0.2418 REMARK 3 23 1.5441 - 1.5214 1.00 2620 138 0.2519 0.3188 REMARK 3 24 1.5214 - 1.5000 1.00 2602 137 0.2736 0.2777 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 54.83 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2266 REMARK 3 ANGLE : 1.389 3088 REMARK 3 CHIRALITY : 0.121 314 REMARK 3 PLANARITY : 0.011 411 REMARK 3 DIHEDRAL : 12.673 830 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T9W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067220. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66783 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.81000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3CG8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN CONCENTRATION WAS 20 MG/ML REMARK 280 BUFFERED WITH 20 MM TRIS (PH 7.9), THE PRECIPITANT CONTAINED 3.0 REMARK 280 M NACL AND 100 MM HEPES, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 55.09000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.80623 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 59.60667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 55.09000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 31.80623 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 59.60667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 55.09000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 31.80623 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.60667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 55.09000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 31.80623 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 59.60667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 55.09000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 31.80623 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 59.60667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 55.09000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 31.80623 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 59.60667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.61245 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 119.21333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 63.61245 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 119.21333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 63.61245 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 119.21333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 63.61245 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 119.21333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 63.61245 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 119.21333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 63.61245 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 119.21333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DETERMINED VIA GEL-FILTRATION CHROMATOGRAPHY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -176.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 376 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 417 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 461 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 749 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 GLY A 20 REMARK 465 LEU A 21 REMARK 465 VAL A 22 REMARK 465 PRO A 23 REMARK 465 ARG A 24 REMARK 465 GLY A 25 REMARK 465 SER A 26 REMARK 465 HIS A 27 REMARK 465 MET A 28 REMARK 465 PRO A 29 REMARK 465 VAL A 30 REMARK 465 ARG A 31 REMARK 465 ALA A 32 REMARK 465 GLN A 33 REMARK 465 HIS A 304 REMARK 465 GLU A 305 REMARK 465 HIS A 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 317 O HOH A 552 1.55 REMARK 500 O HOH A 328 O HOH A 623 1.55 REMARK 500 O HOH A 479 O HOH A 609 1.69 REMARK 500 O HOH A 464 O HOH A 576 1.76 REMARK 500 O HOH A 541 O HOH A 611 1.81 REMARK 500 O HOH A 479 O HOH A 586 1.97 REMARK 500 NE2 HIS A 194 O HOH A 494 1.97 REMARK 500 O HOH A 457 O HOH A 565 1.98 REMARK 500 O HOH A 530 O HOH A 615 1.99 REMARK 500 SD MET A 271 O HOH A 593 2.01 REMARK 500 O HOH A 380 O HOH A 611 2.01 REMARK 500 O HOH A 595 O HOH A 750 2.02 REMARK 500 O HOH A 364 O HOH A 486 2.02 REMARK 500 O HOH A 533 O HOH A 743 2.03 REMARK 500 O HOH A 599 O HOH A 712 2.04 REMARK 500 O HOH A 503 O HOH A 592 2.05 REMARK 500 NH1 ARG A 37 O HOH A 627 2.06 REMARK 500 O HOH A 592 O HOH A 641 2.07 REMARK 500 O HOH A 366 O HOH A 635 2.07 REMARK 500 O HOH A 581 O HOH A 712 2.08 REMARK 500 O HOH A 381 O HOH A 622 2.08 REMARK 500 O TRP A 272 O HOH A 575 2.09 REMARK 500 O HOH A 360 O HOH A 362 2.10 REMARK 500 O HOH A 487 O HOH A 495 2.11 REMARK 500 ND2 ASN A 280 O HOH A 606 2.11 REMARK 500 O HOH A 431 O HOH A 625 2.11 REMARK 500 O HOH A 507 O HOH A 725 2.12 REMARK 500 OD1 ASN A 190 O HOH A 639 2.13 REMARK 500 O HOH A 320 O HOH A 615 2.13 REMARK 500 O HOH A 392 O HOH A 594 2.14 REMARK 500 C TRP A 272 O HOH A 575 2.15 REMARK 500 OD2 ASP A 97 O HOH A 629 2.16 REMARK 500 N GLU A 49 O HOH A 622 2.18 REMARK 500 SD MET A 284 O HOH A 619 2.19 REMARK 500 O HOH A 422 O HOH A 559 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 464 O HOH A 560 3555 1.65 REMARK 500 O HOH A 374 O HOH A 632 3555 1.93 REMARK 500 NH2 ARG A 121 O HOH A 594 2555 1.95 REMARK 500 O HOH A 483 O HOH A 616 3555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 242 C - N - CA ANGL. DEV. = 11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 185 -123.08 47.72 REMARK 500 ASN A 231 -169.23 -161.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HIS A 146 10.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 307 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 193 NE2 REMARK 620 2 HIS A 194 NE2 76.6 REMARK 620 3 HOH A 364 O 61.2 88.8 REMARK 620 4 HOH A 407 O 167.3 90.9 121.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 311 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 219 ND1 REMARK 620 2 CYS A 276 SG 128.3 REMARK 620 3 HIS A 281 ND1 103.1 127.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 308 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 222 NE2 REMARK 620 2 PEO A 312 O2 90.8 REMARK 620 3 HOH A 375 O 97.8 159.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 310 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 224 NE2 REMARK 620 2 HIS A 275 NE2 100.9 REMARK 620 3 PEO A 312 O1 148.7 95.8 REMARK 620 4 PEO A 312 O2 113.2 107.0 35.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 309 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 277 NE2 REMARK 620 2 PEO A 312 O2 94.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEO A 312 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T9W RELATED DB: PDB DBREF 3T9W A 8 306 PDB 3T9W 3T9W 8 306 SEQRES 1 A 299 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 299 LEU VAL PRO ARG GLY SER HIS MET PRO VAL ARG ALA GLN SEQRES 3 A 299 GLY THR THR ARG ARG ILE THR MET TYR ALA GLU LYS ILE SEQRES 4 A 299 SER ASP GLU LEU TYR GLY TYR GLY LEU ALA PRO GLY GLY SEQRES 5 A 299 ALA THR VAL PRO GLY PRO VAL LEU GLU MET TRP GLU GLY SEQRES 6 A 299 ASP THR LEU GLU ILE ASP LEU VAL ASN THR THR ASP ARG SEQRES 7 A 299 VAL LEU SER LEU HIS PRO HIS GLY VAL ASP TYR ASP VAL SEQRES 8 A 299 ASN SER ASP GLY THR LEU MET ASN GLY SER ALA VAL MET SEQRES 9 A 299 PRO GLY GLN THR ARG ARG TYR THR TRP ARG SER HIS VAL SEQRES 10 A 299 GLY TYR ARG ARG ALA ASP GLY SER TRP ALA GLU GLY THR SEQRES 11 A 299 ALA GLY TYR TRP HIS TYR HIS ASP HIS ALA MET GLY THR SEQRES 12 A 299 GLU HIS GLY THR GLU GLY VAL LEU LYS GLY LEU TYR GLY SEQRES 13 A 299 ALA LEU VAL VAL ARG ARG GLN GLY ASP LEU LEU PRO LYS SEQRES 14 A 299 ARG GLN PHE THR VAL VAL PHE ASN ASP MET MET ILE ASN SEQRES 15 A 299 ASN ARG ALA HIS HIS ASP ALA PRO THR PHE GLU ALA ASN SEQRES 16 A 299 LEU GLY GLU ARG VAL GLU TRP ILE ALA ILE GLY HIS GLY SEQRES 17 A 299 SER ASN PHE HIS THR PHE HIS LEU HIS GLY HIS ARG TRP SEQRES 18 A 299 LEU ASP ASN ARG THR GLY MET ARG THR SER GLU TYR ASP SEQRES 19 A 299 PRO SER PRO LEU ILE ASP ILE LYS ASP LEU ASN PRO GLY SEQRES 20 A 299 VAL SER PHE GLY PHE GLN VAL ILE ALA GLY GLU GLY VAL SEQRES 21 A 299 GLY PRO GLY MET TRP MET TYR HIS CYS HIS VAL GLN ASN SEQRES 22 A 299 HIS SER ASP MET GLY MET ALA GLY MET PHE LEU VAL ARG SEQRES 23 A 299 ASN ALA ASP GLY THR MET PRO ALA GLY VAL HIS GLU HIS HET NI A 307 1 HET CU A 308 1 HET CU A 309 1 HET CU A 310 1 HET CU A 311 1 HET PEO A 312 2 HETNAM NI NICKEL (II) ION HETNAM CU COPPER (II) ION HETNAM PEO HYDROGEN PEROXIDE FORMUL 2 NI NI 2+ FORMUL 3 CU 4(CU 2+) FORMUL 7 PEO H2 O2 FORMUL 8 HOH *468(H2 O) HELIX 1 1 ASP A 97 ASP A 101 5 5 HELIX 2 2 GLY A 153 GLY A 160 1 8 HELIX 3 3 VAL A 278 MET A 284 1 7 SHEET 1 A 4 LEU A 50 GLY A 54 0 SHEET 2 A 4 THR A 36 SER A 47 -1 N GLU A 44 O GLY A 52 SHEET 3 A 4 THR A 74 ASN A 81 1 O GLU A 76 N ARG A 37 SHEET 4 A 4 THR A 115 TRP A 120 -1 O TYR A 118 N ILE A 77 SHEET 1 B 4 LEU A 67 TRP A 70 0 SHEET 2 B 4 TYR A 162 ARG A 168 1 O ARG A 168 N MET A 69 SHEET 3 B 4 GLY A 139 HIS A 144 -1 N TRP A 141 O LEU A 165 SHEET 4 B 4 HIS A 90 PRO A 91 -1 N HIS A 90 O HIS A 144 SHEET 1 C 2 TYR A 126 ARG A 127 0 SHEET 2 C 2 TRP A 133 ALA A 134 -1 O ALA A 134 N TYR A 126 SHEET 1 D 4 MET A 187 ILE A 188 0 SHEET 2 D 4 ARG A 177 ASN A 184 -1 N ASN A 184 O MET A 187 SHEET 3 D 4 ARG A 206 HIS A 214 1 O ILE A 210 N VAL A 181 SHEET 4 D 4 SER A 256 ILE A 262 -1 O VAL A 261 N VAL A 207 SHEET 1 E 5 THR A 198 ASN A 202 0 SHEET 2 E 5 ALA A 287 ARG A 293 1 O ARG A 293 N ALA A 201 SHEET 3 E 5 GLY A 270 CYS A 276 -1 N GLY A 270 O VAL A 292 SHEET 4 E 5 THR A 220 LEU A 223 -1 N HIS A 222 O HIS A 275 SHEET 5 E 5 ILE A 248 ASP A 250 -1 O LYS A 249 N PHE A 221 SHEET 1 F 2 TRP A 228 LEU A 229 0 SHEET 2 F 2 LEU A 245 ILE A 246 -1 O ILE A 246 N TRP A 228 LINK NE2 HIS A 193 NI NI A 307 1555 1555 2.43 LINK NE2 HIS A 194 NI NI A 307 1555 1555 2.71 LINK ND1 HIS A 219 CU CU A 311 1555 1555 2.04 LINK NE2 HIS A 222 CU CU A 308 1555 1555 2.17 LINK NE2 HIS A 224 CU CU A 310 1555 1555 2.10 LINK NE2 HIS A 275 CU CU A 310 1555 1555 2.10 LINK SG CYS A 276 CU CU A 311 1555 1555 2.13 LINK NE2 HIS A 277 CU CU A 309 1555 1555 1.98 LINK ND1 HIS A 281 CU CU A 311 1555 1555 2.02 LINK NI NI A 307 O HOH A 364 1555 1555 2.58 LINK NI NI A 307 O HOH A 407 1555 1555 2.58 LINK CU CU A 308 O2 PEO A 312 1555 1555 2.63 LINK CU CU A 308 O HOH A 375 1555 1555 2.42 LINK CU CU A 309 O2 PEO A 312 1555 1555 2.06 LINK CU CU A 310 O1 PEO A 312 1555 1555 2.20 LINK CU CU A 310 O2 PEO A 312 1555 1555 2.54 CISPEP 1 VAL A 62 PRO A 63 0 -2.68 SITE 1 AC1 7 HIS A 193 HIS A 194 HOH A 364 HOH A 407 SITE 2 AC1 7 HOH A 478 HOH A 486 HOH A 494 SITE 1 AC2 7 HIS A 90 HIS A 92 HIS A 222 HIS A 224 SITE 2 AC2 7 CU A 310 PEO A 312 HOH A 375 SITE 1 AC3 4 HIS A 92 HIS A 144 HIS A 277 PEO A 312 SITE 1 AC4 5 HIS A 146 HIS A 224 HIS A 275 CU A 308 SITE 2 AC4 5 PEO A 312 SITE 1 AC5 5 PHE A 218 HIS A 219 CYS A 276 HIS A 281 SITE 2 AC5 5 MET A 286 SITE 1 AC6 11 HIS A 90 HIS A 92 HIS A 144 HIS A 146 SITE 2 AC6 11 HIS A 222 HIS A 275 HIS A 277 CU A 308 SITE 3 AC6 11 CU A 309 CU A 310 HOH A 526 CRYST1 110.180 110.180 178.820 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009076 0.005240 0.000000 0.00000 SCALE2 0.000000 0.010480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005592 0.00000