HEADER HYDROLASE 04-AUG-11 3TAW TITLE CRYSTAL STRUCTURE OF A PUTATIVE GLYCOSIDE HYDROLASE (BDI_3141) FROM TITLE 2 PARABACTEROIDES DISTASONIS ATCC 8503 AT 1.70 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL GLYCOSIDE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 32-386; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARABACTEROIDES DISTASONIS; SOURCE 3 ORGANISM_TAXID: 435591; SOURCE 4 STRAIN: ATCC 8503 / DSM 20701 / NCTC 11152; SOURCE 5 GENE: BDI_3141; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS 5-BLADED BETA-PROPELLER, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3TAW 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3TAW 1 REMARK REVDAT 2 24-DEC-14 3TAW 1 TITLE REVDAT 1 24-AUG-11 3TAW 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL GLYCOSIDE HYDROLASE JRNL TITL 2 (BDI_3141) FROM PARABACTEROIDES DISTASONIS ATCC 8503 AT 1.70 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0116 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 42405 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2138 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2560 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2753 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 327 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.33000 REMARK 3 B22 (A**2) : -0.33000 REMARK 3 B33 (A**2) : 0.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.872 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2970 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2059 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4026 ; 1.386 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5017 ; 0.863 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 373 ; 6.867 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;30.533 ;24.710 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 477 ;11.950 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;12.256 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 418 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3346 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 604 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 386 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5353 25.3691 72.5084 REMARK 3 T TENSOR REMARK 3 T11: 0.0125 T22: 0.0430 REMARK 3 T33: 0.0240 T12: -0.0090 REMARK 3 T13: -0.0073 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.7388 L22: 0.5828 REMARK 3 L33: 0.5119 L12: 0.2998 REMARK 3 L13: -0.2191 L23: -0.1402 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: 0.0518 S13: 0.0333 REMARK 3 S21: -0.0299 S22: 0.0500 S23: 0.0227 REMARK 3 S31: -0.0296 S32: -0.0073 S33: -0.0227 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. WATERS WERE EXCLUDED FROM TLS REFINEMENT. REMARK 3 4.MAGNESIUM FROM THE CRYSTALLIZATION AND 1,2-ETHANEDIOL (EDO) REMARK 3 USED AS A CRYOPROTECTANT WERE MODELED INTO THE STRUCTURE. REMARK 3 5.UNKNOWN LIGANDS (UNL) WAS MODELED INTO THE PUTATIVE ACTIVE REMARK 3 SITE. THE POSITIONINGS OF THE UNL'S ARE SIMILAR TO THE REMARK 3 POSITIONING OF FRUCTOSE INTO THE ACTIVE SITE ON A RELATED REMARK 3 STRUCTURE, AN INVERTASE FROM SCHWANNOCYMES OCCIDENTALIS (PDB ID REMARK 3 3KF3). 6. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 7. REMARK 3 ASN A82 IS A RAMACHANDRAN OUTLIER IN MOLPROBITY EVEN THOUGH ITS REMARK 3 POSITIONING IS SUPPORTED BY ELECTRON DENSITY. REMARK 4 REMARK 4 3TAW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97907 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42521 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 28.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12400 REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 0.89200 REMARK 200 R SYM FOR SHELL (I) : 0.89200 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% POLYETHYLENE GLYCOL 3350, 0.2M REMARK 280 MAGNESIUM ACETATE, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.87950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.18050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.18050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.93975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.18050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.18050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 173.81925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.18050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.18050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.93975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.18050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.18050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 173.81925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 115.87950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 32 REMARK 465 VAL A 33 REMARK 465 SER A 34 REMARK 465 GLU A 35 REMARK 465 THR A 36 REMARK 465 ILE A 37 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 45 -160.59 -113.95 REMARK 500 PHE A 81 -158.84 -152.84 REMARK 500 ASN A 82 78.52 22.40 REMARK 500 ARG A 109 -156.73 -120.43 REMARK 500 ASP A 137 -168.88 -122.87 REMARK 500 LYS A 184 -35.39 -132.59 REMARK 500 SER A 208 79.95 70.82 REMARK 500 LEU A 246 -6.95 72.04 REMARK 500 THR A 338 -55.57 -132.23 REMARK 500 GLU A 355 -22.10 -154.44 REMARK 500 SER A 373 -33.43 -134.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 389 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 385 OD1 REMARK 620 2 PHE A 386 O 90.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 392 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 393 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 397 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 398 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 393092 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 GLY 0 FOLLOWED BY RESIDUES 32-386 OF THE TARGET SEQUENCE. DBREF 3TAW A 32 386 UNP A6LGN3 A6LGN3_PARD8 32 386 SEQADV 3TAW GLY A 0 UNP A6LGN3 EXPRESSION TAG SEQRES 1 A 356 GLY ALA VAL SER GLU THR ILE SER GLU THR ALA TRP CYS SEQRES 2 A 356 LEU ASP GLY PHE GLU ARG PRO THR GLY VAL ASN PRO VAL SEQRES 3 A 356 ILE LYS PRO LEU PRO THR LYS PHE TYR CYS PRO MSE ARG SEQRES 4 A 356 GLU ASP SER VAL ALA TRP GLU GLU SER ASP THR PHE ASN SEQRES 5 A 356 PRO ALA ALA THR ILE TYR ASP GLY LYS ILE VAL VAL MSE SEQRES 6 A 356 TYR ARG ALA GLU ASP ASN SER ALA GLN GLY ILE GLY SER SEQRES 7 A 356 ARG THR SER ARG LEU GLY TYR ALA THR SER THR ASP GLY SEQRES 8 A 356 ILE HIS PHE GLU ARG ASP THR LYS PRO ALA PHE TYR PRO SEQRES 9 A 356 ALA LYS ASP ASN GLN ALA GLU ASN GLU CYS PRO GLY GLY SEQRES 10 A 356 THR GLU ASP PRO ARG ILE ALA MSE THR GLU ASP GLY THR SEQRES 11 A 356 TYR VAL LEU LEU TYR THR GLN TRP ASN ARG LYS VAL PRO SEQRES 12 A 356 ARG LEU ALA VAL ALA THR SER LYS ASP LEU LYS HIS TRP SEQRES 13 A 356 THR LYS PHE GLY PRO ALA PHE GLU LYS ALA TYR ASN GLY SEQRES 14 A 356 LYS PHE LYS ASP GLU ALA THR LYS SER ALA SER LEU VAL SEQRES 15 A 356 THR THR LEU LYS GLY ASP LYS GLN VAL ILE ALA LYS VAL SEQRES 16 A 356 ASN GLY LYS TYR PHE MSE TYR TRP GLY GLU LYS ASN VAL SEQRES 17 A 356 TYR ALA ALA THR SER ASP ASN LEU ILE ASP TRP ASP PRO SEQRES 18 A 356 LEU LEU ASP GLU ASN GLY GLU LEU LEU LYS LEU PHE SER SEQRES 19 A 356 PRO ARG SER GLY TYR PHE ASP SER GLN LEU THR GLU CYS SEQRES 20 A 356 GLY PRO PRO ALA ILE LEU THR LYS ASP GLY ILE VAL LEU SEQRES 21 A 356 LEU TYR ASN GLY LYS ASN GLU PRO GLY GLU LYS GLY ASP SEQRES 22 A 356 THR ALA TYR PRO ALA ASN SER TYR CYS ALA GLY GLN ALA SEQRES 23 A 356 LEU PHE ASP VAL ASN ASN PRO THR LYS LEU ILE GLY ARG SEQRES 24 A 356 LEU ASP LYS PRO PHE LEU GLN PRO THR ASP ASP PHE GLU SEQRES 25 A 356 LYS SER GLY GLN TYR PRO ALA GLY THR VAL PHE VAL GLU SEQRES 26 A 356 GLY LEU VAL TYR TYR ARG ASN LYS TRP TYR LEU TYR TYR SEQRES 27 A 356 GLY CYS ALA ASP SER PHE VAL ALA VAL ALA VAL SER ASP SEQRES 28 A 356 LYS GLN LEU ASN PHE MODRES 3TAW MSE A 68 MET SELENOMETHIONINE MODRES 3TAW MSE A 95 MET SELENOMETHIONINE MODRES 3TAW MSE A 155 MET SELENOMETHIONINE MODRES 3TAW MSE A 231 MET SELENOMETHIONINE HET MSE A 68 8 HET MSE A 95 8 HET MSE A 155 8 HET MSE A 231 13 HET UNL A 387 4 HET UNL A 388 4 HET MG A 389 1 HET ACT A 390 4 HET ACT A 391 4 HET EDO A 392 4 HET EDO A 393 4 HET EDO A 394 4 HET EDO A 395 4 HET EDO A 396 4 HET EDO A 397 4 HET EDO A 398 4 HET EDO A 399 4 HET EDO A 400 4 HET EDO A 401 4 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 4 MG MG 2+ FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 EDO 13(C2 H6 O2) FORMUL 20 HOH *327(H2 O) HELIX 1 1 GLN A 139 CYS A 144 1 6 HELIX 2 2 LYS A 195 LYS A 200 1 6 HELIX 3 3 PRO A 298 GLY A 302 5 5 HELIX 4 4 ASP A 339 SER A 344 1 6 SHEET 1 A 2 LYS A 63 CYS A 66 0 SHEET 2 A 2 ASP A 71 ALA A 74 -1 O VAL A 73 N PHE A 64 SHEET 1 B 3 ASP A 79 TYR A 88 0 SHEET 2 B 3 LYS A 91 GLU A 99 -1 O VAL A 93 N THR A 86 SHEET 3 B 3 SER A 111 LEU A 113 -1 O ARG A 112 N ALA A 98 SHEET 1 C 4 ASP A 79 TYR A 88 0 SHEET 2 C 4 LYS A 91 GLU A 99 -1 O VAL A 93 N THR A 86 SHEET 3 C 4 ALA A 116 SER A 118 -1 O ALA A 116 N VAL A 94 SHEET 4 C 4 GLU A 125 ARG A 126 -1 O GLU A 125 N THR A 117 SHEET 1 D 4 GLY A 147 MSE A 155 0 SHEET 2 D 4 TYR A 161 TRP A 168 -1 O VAL A 162 N ALA A 154 SHEET 3 D 4 PRO A 173 SER A 180 -1 O ALA A 178 N LEU A 163 SHEET 4 D 4 THR A 187 PRO A 191 -1 O PHE A 189 N VAL A 177 SHEET 1 E 5 LYS A 219 ILE A 222 0 SHEET 2 E 5 ALA A 209 LYS A 216 -1 N LYS A 216 O LYS A 219 SHEET 3 E 5 ALA A 281 THR A 284 1 O LEU A 283 N THR A 213 SHEET 4 E 5 GLY A 287 LYS A 295 -1 O VAL A 289 N ILE A 282 SHEET 5 E 5 LEU A 274 CYS A 277 -1 N GLU A 276 O ASN A 293 SHEET 1 F 8 ASP A 250 PRO A 251 0 SHEET 2 F 8 TYR A 239 SER A 243 -1 N THR A 242 O ASP A 250 SHEET 3 F 8 TYR A 229 TRP A 233 -1 N TRP A 233 O TYR A 239 SHEET 4 F 8 ALA A 209 LYS A 216 -1 N SER A 210 O TYR A 232 SHEET 5 F 8 ALA A 281 THR A 284 1 O LEU A 283 N THR A 213 SHEET 6 F 8 GLY A 287 LYS A 295 -1 O VAL A 289 N ILE A 282 SHEET 7 F 8 TYR A 311 PHE A 318 -1 O ALA A 316 N LEU A 290 SHEET 8 F 8 LEU A 326 ARG A 329 -1 O ILE A 327 N LEU A 317 SHEET 1 G 3 VAL A 352 TYR A 360 0 SHEET 2 G 3 LYS A 363 CYS A 370 -1 O TYR A 365 N VAL A 358 SHEET 3 G 3 PHE A 374 SER A 380 -1 O SER A 380 N TRP A 364 LINK C PRO A 67 N MSE A 68 1555 1555 1.34 LINK C MSE A 68 N ARG A 69 1555 1555 1.34 LINK C VAL A 94 N MSE A 95 1555 1555 1.33 LINK C MSE A 95 N TYR A 96 1555 1555 1.32 LINK C ALA A 154 N MSE A 155 1555 1555 1.32 LINK C MSE A 155 N THR A 156 1555 1555 1.33 LINK C PHE A 230 N MSE A 231 1555 1555 1.33 LINK C MSE A 231 N TYR A 232 1555 1555 1.33 LINK OD1 ASN A 385 MG MG A 389 1555 1555 2.06 LINK O PHE A 386 MG MG A 389 1555 1555 2.06 CISPEP 1 ASN A 54 PRO A 55 0 -4.34 CISPEP 2 CYS A 144 PRO A 145 0 -0.17 CISPEP 3 CYS A 144 PRO A 145 0 12.78 SITE 1 AC1 6 ASP A 71 ASN A 385 PHE A 386 HOH A 622 SITE 2 AC1 6 HOH A 623 HOH A 624 SITE 1 AC2 5 PRO A 67 TYR A 133 ARG A 361 HOH A 698 SITE 2 AC2 5 HOH A 721 SITE 1 AC3 3 PRO A 333 GLN A 336 HOH A 720 SITE 1 AC4 5 LEU A 260 LYS A 261 ARG A 266 SER A 267 SITE 2 AC4 5 HOH A 432 SITE 1 AC5 3 ASP A 286 ASP A 319 VAL A 320 SITE 1 AC6 10 ALA A 85 THR A 86 ILE A 153 GLN A 220 SITE 2 AC6 10 PRO A 280 LEU A 357 HOH A 407 HOH A 426 SITE 3 AC6 10 HOH A 494 HOH A 658 SITE 1 AC7 7 LYS A 129 TYR A 359 TYR A 360 ARG A 361 SITE 2 AC7 7 ASN A 362 HOH A 428 HOH A 723 SITE 1 AC8 9 ARG A 174 LEU A 175 PRO A 191 ALA A 192 SITE 2 AC8 9 PHE A 193 PHE A 201 GLU A 204 THR A 206 SITE 3 AC8 9 HOH A 679 SITE 1 AC9 5 ASN A 142 PRO A 191 GLU A 194 LYS A 202 SITE 2 AC9 5 ASP A 203 SITE 1 BC1 3 LYS A 91 THR A 117 HOH A 546 SITE 1 BC2 6 PHE A 132 TYR A 133 TRP A 186 LYS A 188 SITE 2 BC2 6 HOH A 638 HOH A 648 SITE 1 BC3 5 GLY A 268 ASP A 303 LYS A 325 ASP A 331 SITE 2 BC3 5 HOH A 613 SITE 1 BC4 4 GLU A 149 TRP A 168 PRO A 173 LYS A 207 SITE 1 BC5 4 VAL A 225 ASN A 226 PRO A 323 EDO A 403 SITE 1 BC6 2 LYS A 301 EDO A 402 SITE 1 BC7 3 VAL A 225 ASN A 226 VAL A 320 CRYST1 56.361 56.361 231.759 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017743 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004315 0.00000