HEADER SUGAR BINDING PROTEIN, VIRAL PROTEIN 04-AUG-11 3TAY TITLE CRYSTAL STRUCTURE OF PORCINE ROTAVIRUS CRW-8 VP8* IN COMPLEX WITH N- TITLE 2 GLYCOLYLNEURAMINIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER CAPSID PROTEIN VP4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HEMAGGLUTININ, OUTER CAPSID PROTEIN VP8*, OUTER CAPSID COMPND 5 PROTEIN VP5*; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORCINE ROTAVIRUS; SOURCE 3 ORGANISM_COMMON: RV-A; SOURCE 4 ORGANISM_TAXID: 31578; SOURCE 5 STRAIN: SEROTYPE 3 / STRAIN CRW-8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P-GEX KEYWDS BETA SANDWICH, LECTIN, SUGAR BINDING PROTEIN, VIRAL PROTEIN, NEU5GC EXPDTA X-RAY DIFFRACTION AUTHOR X.YU,H.BLANCHARD REVDAT 4 28-FEB-24 3TAY 1 HETSYN REVDAT 3 29-JUL-20 3TAY 1 REMARK SEQADV LINK SITE REVDAT 2 05-DEC-12 3TAY 1 JRNL REVDAT 1 17-OCT-12 3TAY 0 JRNL AUTH X.YU,V.T.DANG,F.E.FLEMING,M.VON ITZSTEIN,B.S.COULSON, JRNL AUTH 2 H.BLANCHARD JRNL TITL STRUCTURAL BASIS OF ROTAVIRUS STRAIN PREFERENCE TOWARD JRNL TITL 2 N-ACETYL- OR N-GLYCOLYLNEURAMINIC ACID-CONTAINING RECEPTORS. JRNL REF J.VIROL. V. 86 13456 2012 JRNL REFN ISSN 0022-538X JRNL PMID 23035213 JRNL DOI 10.1128/JVI.06975-11 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1593 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2152 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2606 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 363 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.945 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2811 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3869 ; 1.045 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 5.722 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;31.296 ;24.880 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 411 ;11.662 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 9.260 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 442 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2123 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1241 ; 0.182 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1935 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 324 ; 0.101 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.106 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 88 ; 0.150 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 54 ; 0.087 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1646 ; 0.354 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2719 ; 0.681 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1219 ; 0.944 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1145 ; 1.464 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TAY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067256. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29988 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 59.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.99100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.98200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.82300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.98200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.99100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.82300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 87 -71.23 -111.58 REMARK 500 ILE A 99 -67.46 -128.91 REMARK 500 ASP A 100 16.55 -147.50 REMARK 500 PRO A 182 30.76 -92.57 REMARK 500 THR B 87 -74.63 -118.10 REMARK 500 ILE B 99 -66.32 -130.09 REMARK 500 ASP B 100 20.57 -150.26 REMARK 500 ASN B 111 67.68 63.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 1 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 142 OD2 REMARK 620 2 GLY A 156 O 99.0 REMARK 620 3 TYR A 165 OH 76.8 124.0 REMARK 620 4 THR A 176 OG1 63.8 151.2 76.6 REMARK 620 5 TYR A 177 O 156.1 104.8 87.9 95.1 REMARK 620 6 HOH A 342 O 79.4 95.5 136.3 60.1 100.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 1 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 142 OD2 REMARK 620 2 GLY B 156 O 94.3 REMARK 620 3 TYR B 165 OH 74.7 118.0 REMARK 620 4 THR B 176 OG1 64.1 148.6 79.8 REMARK 620 5 TYR B 177 O 157.9 106.9 89.4 98.5 REMARK 620 6 ASN B 178 OD1 113.9 81.4 158.9 86.9 76.4 REMARK 620 7 HOH B 363 O 81.4 96.8 138.6 59.3 101.8 35.2 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TB0 RELATED DB: PDB DBREF 3TAY A 64 224 UNP P0C6Y8 VP4_ROTP3 64 224 DBREF 3TAY B 64 224 UNP P0C6Y8 VP4_ROTP3 64 224 SEQADV 3TAY GLY A 62 UNP P0C6Y8 EXPRESSION TAG SEQADV 3TAY SER A 63 UNP P0C6Y8 EXPRESSION TAG SEQADV 3TAY GLN A 70 UNP P0C6Y8 ARG 70 ENGINEERED MUTATION SEQADV 3TAY ILE A 82 UNP P0C6Y8 VAL 82 ENGINEERED MUTATION SEQADV 3TAY ASN A 151 UNP P0C6Y8 SER 151 ENGINEERED MUTATION SEQADV 3TAY SER A 157 UNP P0C6Y8 PRO 157 ENGINEERED MUTATION SEQADV 3TAY SER A 201 UNP P0C6Y8 LEU 201 ENGINEERED MUTATION SEQADV 3TAY GLY B 62 UNP P0C6Y8 EXPRESSION TAG SEQADV 3TAY SER B 63 UNP P0C6Y8 EXPRESSION TAG SEQADV 3TAY GLN B 70 UNP P0C6Y8 ARG 70 ENGINEERED MUTATION SEQADV 3TAY ILE B 82 UNP P0C6Y8 VAL 82 ENGINEERED MUTATION SEQADV 3TAY ASN B 151 UNP P0C6Y8 SER 151 ENGINEERED MUTATION SEQADV 3TAY SER B 157 UNP P0C6Y8 PRO 157 ENGINEERED MUTATION SEQADV 3TAY SER B 201 UNP P0C6Y8 LEU 201 ENGINEERED MUTATION SEQRES 1 A 163 GLY SER LEU LEU ASP GLY PRO TYR GLN PRO THR THR PHE SEQRES 2 A 163 ASN PRO PRO THR SER TYR TRP ILE LEU LEU ALA PRO THR SEQRES 3 A 163 VAL GLU GLY VAL VAL ILE GLN GLY THR ASN ASN ILE ASP SEQRES 4 A 163 ARG TRP LEU ALA THR ILE LEU ILE GLU PRO ASN VAL GLN SEQRES 5 A 163 THR THR ASN ARG ILE TYR ASN LEU PHE GLY GLN GLN VAL SEQRES 6 A 163 THR LEU SER VAL GLU ASN THR SER GLN THR GLN TRP LYS SEQRES 7 A 163 PHE ILE ASP VAL SER LYS THR THR PRO THR GLY ASN TYR SEQRES 8 A 163 THR GLN HIS GLY SER LEU PHE SER THR PRO LYS LEU TYR SEQRES 9 A 163 ALA VAL MET LYS PHE SER GLY ARG ILE TYR THR TYR ASN SEQRES 10 A 163 GLY THR THR PRO ASN ALA THR THR GLY TYR TYR SER THR SEQRES 11 A 163 THR ASN TYR ASP THR VAL ASN MET THR SER PHE CYS ASP SEQRES 12 A 163 PHE TYR ILE ILE PRO ARG ASN GLN GLU GLU LYS CYS THR SEQRES 13 A 163 GLU TYR ILE ASN HIS GLY LEU SEQRES 1 B 163 GLY SER LEU LEU ASP GLY PRO TYR GLN PRO THR THR PHE SEQRES 2 B 163 ASN PRO PRO THR SER TYR TRP ILE LEU LEU ALA PRO THR SEQRES 3 B 163 VAL GLU GLY VAL VAL ILE GLN GLY THR ASN ASN ILE ASP SEQRES 4 B 163 ARG TRP LEU ALA THR ILE LEU ILE GLU PRO ASN VAL GLN SEQRES 5 B 163 THR THR ASN ARG ILE TYR ASN LEU PHE GLY GLN GLN VAL SEQRES 6 B 163 THR LEU SER VAL GLU ASN THR SER GLN THR GLN TRP LYS SEQRES 7 B 163 PHE ILE ASP VAL SER LYS THR THR PRO THR GLY ASN TYR SEQRES 8 B 163 THR GLN HIS GLY SER LEU PHE SER THR PRO LYS LEU TYR SEQRES 9 B 163 ALA VAL MET LYS PHE SER GLY ARG ILE TYR THR TYR ASN SEQRES 10 B 163 GLY THR THR PRO ASN ALA THR THR GLY TYR TYR SER THR SEQRES 11 B 163 THR ASN TYR ASP THR VAL ASN MET THR SER PHE CYS ASP SEQRES 12 B 163 PHE TYR ILE ILE PRO ARG ASN GLN GLU GLU LYS CYS THR SEQRES 13 B 163 GLU TYR ILE ASN HIS GLY LEU HET MN0 A1000 23 HET SO4 A2000 5 HET SO4 A 225 5 HET MPD A4210 8 HET MPD A 226 8 HET EPE A2691 15 HET BEN A1561 9 HET NA A 1 1 HET MN0 B1000 23 HET MPD B4210 8 HET MPD B 225 8 HET NA B 1 1 HETNAM MN0 METHYL 3,5-DIDEOXY-5-[(HYDROXYACETYL)AMINO]-D-GLYCERO- HETNAM 2 MN0 ALPHA-D-GALACTO-NON-2-ULOPYRANOSIDONIC ACID HETNAM SO4 SULFATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM BEN BENZAMIDINE HETNAM NA SODIUM ION HETSYN MN0 METHYL 3,5-DIDEOXY-5-[(HYDROXYACETYL)AMINO]-D-GLYCERO- HETSYN 2 MN0 ALPHA-D-GALACTO-NON-2-ULOSIDONIC ACID; METHYL 3,5- HETSYN 3 MN0 DIDEOXY-5-[(HYDROXYACETYL)AMINO]-D-GLYCERO-D-GALACTO- HETSYN 4 MN0 NON-2-ULOSIDONIC ACID; METHYL 3,5-DIDEOXY-5- HETSYN 5 MN0 [(HYDROXYACETYL)AMINO]-D-GLYCERO-GALACTO-NON-2- HETSYN 6 MN0 ULOSIDONIC ACID HETSYN EPE HEPES FORMUL 3 MN0 2(C12 H21 N O10) FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 MPD 4(C6 H14 O2) FORMUL 8 EPE C8 H18 N2 O4 S FORMUL 9 BEN C7 H8 N2 FORMUL 10 NA 2(NA 1+) FORMUL 15 HOH *363(H2 O) HELIX 1 1 ASN A 193 VAL A 197 5 5 HELIX 2 2 GLN A 212 GLY A 223 1 12 HELIX 3 3 ASN B 193 VAL B 197 5 5 HELIX 4 4 GLN B 212 GLY B 223 1 12 SHEET 1 A11 ASP A 66 TYR A 69 0 SHEET 2 A11 ASP A 204 PRO A 209 -1 O PHE A 205 N TYR A 69 SHEET 3 A11 TYR A 80 ALA A 85 -1 N TRP A 81 O ILE A 208 SHEET 4 A11 TYR A 165 PHE A 170 -1 O VAL A 167 N ILE A 82 SHEET 5 A11 ARG A 173 THR A 180 -1 O TYR A 175 N MET A 168 SHEET 6 A11 THR A 153 SER A 160 1 N PHE A 159 O GLY A 179 SHEET 7 A11 TRP A 138 LYS A 145 -1 N TRP A 138 O SER A 160 SHEET 8 A11 TRP A 102 ILE A 108 -1 N ALA A 104 O VAL A 143 SHEET 9 A11 GLY A 90 THR A 96 -1 N GLY A 95 O LEU A 103 SHEET 10 A11 ASN A 198 SER A 201 -1 O THR A 200 N GLN A 94 SHEET 11 A11 THR A 72 PHE A 74 -1 N PHE A 74 O MET A 199 SHEET 1 B 6 ASP A 66 TYR A 69 0 SHEET 2 B 6 ASP A 204 PRO A 209 -1 O PHE A 205 N TYR A 69 SHEET 3 B 6 TYR A 80 ALA A 85 -1 N TRP A 81 O ILE A 208 SHEET 4 B 6 TYR A 165 PHE A 170 -1 O VAL A 167 N ILE A 82 SHEET 5 B 6 ARG A 173 THR A 180 -1 O TYR A 175 N MET A 168 SHEET 6 B 6 THR A 185 SER A 190 -1 O THR A 185 N ASN A 178 SHEET 1 C 2 VAL A 112 LEU A 121 0 SHEET 2 C 2 GLN A 124 ASN A 132 -1 O VAL A 126 N TYR A 119 SHEET 1 D11 ASP B 66 TYR B 69 0 SHEET 2 D11 ASP B 204 PRO B 209 -1 O PHE B 205 N TYR B 69 SHEET 3 D11 TYR B 80 ALA B 85 -1 N TRP B 81 O ILE B 208 SHEET 4 D11 TYR B 165 PHE B 170 -1 O TYR B 165 N LEU B 84 SHEET 5 D11 ARG B 173 THR B 180 -1 O TYR B 175 N MET B 168 SHEET 6 D11 THR B 153 SER B 160 1 N PHE B 159 O GLY B 179 SHEET 7 D11 TRP B 138 LYS B 145 -1 N ASP B 142 O HIS B 155 SHEET 8 D11 TRP B 102 ILE B 108 -1 N ALA B 104 O VAL B 143 SHEET 9 D11 GLY B 90 THR B 96 -1 N GLY B 95 O LEU B 103 SHEET 10 D11 ASN B 198 SER B 201 -1 O THR B 200 N GLN B 94 SHEET 11 D11 THR B 72 PHE B 74 -1 N PHE B 74 O MET B 199 SHEET 1 E 6 ASP B 66 TYR B 69 0 SHEET 2 E 6 ASP B 204 PRO B 209 -1 O PHE B 205 N TYR B 69 SHEET 3 E 6 TYR B 80 ALA B 85 -1 N TRP B 81 O ILE B 208 SHEET 4 E 6 TYR B 165 PHE B 170 -1 O TYR B 165 N LEU B 84 SHEET 5 E 6 ARG B 173 THR B 180 -1 O TYR B 175 N MET B 168 SHEET 6 E 6 THR B 185 SER B 190 -1 O THR B 185 N ASN B 178 SHEET 1 F 2 VAL B 112 LEU B 121 0 SHEET 2 F 2 GLN B 124 ASN B 132 -1 O VAL B 126 N TYR B 119 LINK NA NA A 1 OD2 ASP A 142 1555 1555 2.49 LINK NA NA A 1 O GLY A 156 1555 1555 2.24 LINK NA NA A 1 OH TYR A 165 1555 1555 2.37 LINK NA NA A 1 OG1 THR A 176 1555 1555 2.83 LINK NA NA A 1 O TYR A 177 1555 1555 2.34 LINK NA NA A 1 O HOH A 342 1555 1555 2.88 LINK NA NA B 1 OD2 ASP B 142 1555 1555 2.63 LINK NA NA B 1 O GLY B 156 1555 1555 2.24 LINK NA NA B 1 OH TYR B 165 1555 1555 2.33 LINK NA NA B 1 OG1 THR B 176 1555 1555 2.65 LINK NA NA B 1 O TYR B 177 1555 1555 2.38 LINK NA NA B 1 OD1AASN B 178 1555 1555 2.32 LINK NA NA B 1 O HOH B 363 1555 1555 2.74 CISPEP 1 GLY A 67 PRO A 68 0 4.80 CISPEP 2 THR A 181 PRO A 182 0 6.45 CISPEP 3 GLY B 67 PRO B 68 0 3.35 CISPEP 4 THR B 181 PRO B 182 0 7.00 CRYST1 53.982 59.646 111.964 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018525 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008931 0.00000