HEADER HYDROLASE 08-AUG-11 3TC3 TITLE CRYSTAL STRUCTURE OF SACUVDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UV DAMAGE ENDONUCLEASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS ACIDOCALDARIUS; SOURCE 3 ORGANISM_TAXID: 330779; SOURCE 4 STRAIN: ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770; SOURCE 5 GENE: UVDE, SACI_1096; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIM-BARREL, ENDONUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.M.MEULENBROEK,I.JALA,G.F.MOOLENAAR,N.GOOSEN,N.S.PANNU REVDAT 5 13-SEP-23 3TC3 1 REMARK SEQADV LINK REVDAT 4 06-FEB-13 3TC3 1 JRNL REVDAT 3 26-DEC-12 3TC3 1 JRNL REVDAT 2 14-NOV-12 3TC3 1 JRNL REVDAT 1 07-NOV-12 3TC3 0 JRNL AUTH E.M.MEULENBROEK,C.PERON CANE,I.JALA,S.IWAI,G.F.MOOLENAAR, JRNL AUTH 2 N.GOOSEN,N.S.PANNU JRNL TITL UV DAMAGE ENDONUCLEASE EMPLOYS A NOVEL DUAL-DINUCLEOTIDE JRNL TITL 2 FLIPPING MECHANISM TO RECOGNIZE DIFFERENT DNA LESIONS. JRNL REF NUCLEIC ACIDS RES. V. 41 1363 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23221644 JRNL DOI 10.1093/NAR/GKS1127 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0116 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 89933 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4732 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6333 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 338 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4666 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 577 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : 0.54000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.66000 REMARK 3 B23 (A**2) : 0.27000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.826 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4799 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6478 ; 2.211 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 591 ; 5.987 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 225 ;37.140 ;24.578 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 940 ;14.271 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;15.187 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 735 ; 0.158 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3526 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 288 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1140 35.9660 36.9590 REMARK 3 T TENSOR REMARK 3 T11: 0.0249 T22: 0.0376 REMARK 3 T33: 0.0223 T12: 0.0038 REMARK 3 T13: -0.0133 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.1428 L22: 0.8747 REMARK 3 L33: 0.2163 L12: 0.5765 REMARK 3 L13: -0.1559 L23: 0.1257 REMARK 3 S TENSOR REMARK 3 S11: 0.0597 S12: -0.0549 S13: 0.0156 REMARK 3 S21: 0.0646 S22: -0.0601 S23: 0.0375 REMARK 3 S31: 0.0033 S32: 0.0202 S33: 0.0004 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 289 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3800 30.0840 74.5330 REMARK 3 T TENSOR REMARK 3 T11: 0.0304 T22: 0.0484 REMARK 3 T33: 0.0111 T12: 0.0104 REMARK 3 T13: -0.0070 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.6551 L22: 0.7683 REMARK 3 L33: 0.5922 L12: -0.1393 REMARK 3 L13: -0.3329 L23: 0.2641 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: 0.0342 S13: 0.0140 REMARK 3 S21: -0.0564 S22: -0.0146 S23: -0.0294 REMARK 3 S31: -0.0483 S32: -0.0248 S33: -0.0166 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3TC3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067297. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94666 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 46.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : 0.52000 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2J6V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG3350, 0.25 M NH4CL, PH 7.0, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 ILE A -4 REMARK 465 GLU A -3 REMARK 465 GLY A -2 REMARK 465 ARG A -1 REMARK 465 ASP A 289 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 SER B -7 REMARK 465 GLY B -6 REMARK 465 HIS B -5 REMARK 465 ILE B -4 REMARK 465 GLU B -3 REMARK 465 GLY B -2 REMARK 465 ARG B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 442 O HOH A 541 1.82 REMARK 500 O HOH A 341 O HOH A 376 1.98 REMARK 500 NE2 HIS A 100 O HOH A 351 2.04 REMARK 500 NE2 HIS B 100 O HOH B 325 2.15 REMARK 500 SG CYS B 14 CB CYS B 40 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 528 O HOH B 542 1655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 47 CE2 TRP A 47 CD2 0.084 REMARK 500 HIS A 100 CG HIS A 100 CD2 0.055 REMARK 500 GLU A 113 CD GLU A 113 OE2 0.069 REMARK 500 CYS B 14 CB CYS B 14 SG 0.135 REMARK 500 CYS B 40 CA CYS B 40 CB -0.081 REMARK 500 CYS B 40 CB CYS B 40 SG -0.185 REMARK 500 HIS B 81 CG HIS B 81 CD2 0.056 REMARK 500 GLU B 113 CD GLU B 113 OE1 0.100 REMARK 500 HIS B 243 CG HIS B 243 CD2 0.054 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 2 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 PHE A 55 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 96 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 96 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 260 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 CYS B 14 N - CA - CB ANGL. DEV. = 14.4 DEGREES REMARK 500 ARG B 57 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 96 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 170 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP B 177 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 220 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 230 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 260 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 7 -49.21 76.43 REMARK 500 HIS A 72 42.01 -140.44 REMARK 500 GLU A 135 -91.63 -87.75 REMARK 500 VAL A 179 -51.99 -134.09 REMARK 500 ASP A 225 -163.07 -110.55 REMARK 500 GLU A 267 74.54 -108.50 REMARK 500 LYS A 271 -120.46 54.04 REMARK 500 SER B 7 -44.32 70.10 REMARK 500 GLU B 135 -85.32 -88.30 REMARK 500 VAL B 179 -55.09 -129.10 REMARK 500 ASP B 225 -158.12 -107.91 REMARK 500 LYS B 271 -118.58 59.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 290 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 174 OE2 REMARK 620 2 ASP A 199 OD2 90.8 REMARK 620 3 ASP A 230 OD2 85.5 110.0 REMARK 620 4 GLU A 267 OE1 171.5 94.2 99.1 REMARK 620 5 HOH A 538 O 80.5 168.1 77.6 93.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 290 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 174 OE2 REMARK 620 2 ASP B 199 OD2 84.3 REMARK 620 3 GLU B 267 OE1 171.1 99.3 REMARK 620 4 HOH B 441 O 84.0 165.9 93.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 290 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 290 DBREF 3TC3 A 1 289 UNP Q4J9T1 Q4J9T1_SULAC 1 289 DBREF 3TC3 B 1 289 UNP Q4J9T1 Q4J9T1_SULAC 1 289 SEQADV 3TC3 MET A -20 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 GLY A -19 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS A -18 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS A -17 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS A -16 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS A -15 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS A -14 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS A -13 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS A -12 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS A -11 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS A -10 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS A -9 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 SER A -8 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 SER A -7 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 GLY A -6 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS A -5 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 ILE A -4 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 GLU A -3 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 GLY A -2 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 ARG A -1 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS A 0 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 MET B -20 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 GLY B -19 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS B -18 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS B -17 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS B -16 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS B -15 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS B -14 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS B -13 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS B -12 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS B -11 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS B -10 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS B -9 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 SER B -8 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 SER B -7 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 GLY B -6 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS B -5 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 ILE B -4 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 GLU B -3 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 GLY B -2 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 ARG B -1 UNP Q4J9T1 EXPRESSION TAG SEQADV 3TC3 HIS B 0 UNP Q4J9T1 EXPRESSION TAG SEQRES 1 A 310 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 310 SER GLY HIS ILE GLU GLY ARG HIS MET ARG VAL GLY TYR SEQRES 3 A 310 VAL SER THR ASN TYR SER LEU GLY CYS LYS ALA ASP LYS SEQRES 4 A 310 THR ILE LYS LEU SER SER LEU SER GLU GLU ARG VAL LEU SEQRES 5 A 310 LYS VAL SER SER SER ASN LEU LEU CYS LEU LYS ASN ILE SEQRES 6 A 310 LEU GLU TRP ASN LEU LYS HIS GLU ILE LEU PHE PHE ARG SEQRES 7 A 310 ILE SER SER ASN THR ILE PRO LEU ALA SER HIS PRO LYS SEQRES 8 A 310 PHE HIS VAL ASN TRP LYS ASP LYS LEU SER HIS ILE LEU SEQRES 9 A 310 GLY ASP ILE GLY ASP PHE ILE LYS GLU ASN SER ILE ARG SEQRES 10 A 310 ILE SER MET HIS PRO GLY GLN TYR VAL VAL LEU ASN SER SEQRES 11 A 310 VAL ARG GLU GLU VAL VAL ARG SER SER ILE MET GLU LEU SEQRES 12 A 310 LYS TYR HIS ALA ASP LEU LEU ASP SER MET GLY ILE GLU SEQRES 13 A 310 GLY LYS ILE GLN ILE HIS VAL GLY SER SER MET ASN GLY SEQRES 14 A 310 LYS GLU GLU SER LEU ASN ARG PHE ILE GLU ASN PHE ARG SEQRES 15 A 310 LYS LEU PRO SER ASN ILE SER LYS ARG LEU VAL ILE GLU SEQRES 16 A 310 ASN ASP ASP LYS VAL PHE SER VAL LYS ASP CYS LEU TRP SEQRES 17 A 310 ILE SER GLU ARG THR GLY ILE PRO VAL ILE PHE ASP ASN SEQRES 18 A 310 LEU HIS HIS SER ILE LEU ASN ASN GLY GLU SER LEU ASN SEQRES 19 A 310 ASP ALA LEU SER LEU VAL ARG ARG THR TRP LYS ASP ARG SEQRES 20 A 310 PRO MET ILE ASP TYR SER GLU GLN GLU PRO GLY GLU LYS SEQRES 21 A 310 PRO GLY VAL HIS ALA THR THR ILE ASN GLU GLU ASN PHE SEQRES 22 A 310 ARG ARG PHE VAL ASN GLU VAL ASP GLU VAL ASP ILE MET SEQRES 23 A 310 LEU GLU VAL LYS ASP LYS GLU ILE SER ALA LEU LYS ALA SEQRES 24 A 310 VAL LYS VAL LEU LYS GLU LEU ASN LYS LEU ASP SEQRES 1 B 310 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 B 310 SER GLY HIS ILE GLU GLY ARG HIS MET ARG VAL GLY TYR SEQRES 3 B 310 VAL SER THR ASN TYR SER LEU GLY CYS LYS ALA ASP LYS SEQRES 4 B 310 THR ILE LYS LEU SER SER LEU SER GLU GLU ARG VAL LEU SEQRES 5 B 310 LYS VAL SER SER SER ASN LEU LEU CYS LEU LYS ASN ILE SEQRES 6 B 310 LEU GLU TRP ASN LEU LYS HIS GLU ILE LEU PHE PHE ARG SEQRES 7 B 310 ILE SER SER ASN THR ILE PRO LEU ALA SER HIS PRO LYS SEQRES 8 B 310 PHE HIS VAL ASN TRP LYS ASP LYS LEU SER HIS ILE LEU SEQRES 9 B 310 GLY ASP ILE GLY ASP PHE ILE LYS GLU ASN SER ILE ARG SEQRES 10 B 310 ILE SER MET HIS PRO GLY GLN TYR VAL VAL LEU ASN SER SEQRES 11 B 310 VAL ARG GLU GLU VAL VAL ARG SER SER ILE MET GLU LEU SEQRES 12 B 310 LYS TYR HIS ALA ASP LEU LEU ASP SER MET GLY ILE GLU SEQRES 13 B 310 GLY LYS ILE GLN ILE HIS VAL GLY SER SER MET ASN GLY SEQRES 14 B 310 LYS GLU GLU SER LEU ASN ARG PHE ILE GLU ASN PHE ARG SEQRES 15 B 310 LYS LEU PRO SER ASN ILE SER LYS ARG LEU VAL ILE GLU SEQRES 16 B 310 ASN ASP ASP LYS VAL PHE SER VAL LYS ASP CYS LEU TRP SEQRES 17 B 310 ILE SER GLU ARG THR GLY ILE PRO VAL ILE PHE ASP ASN SEQRES 18 B 310 LEU HIS HIS SER ILE LEU ASN ASN GLY GLU SER LEU ASN SEQRES 19 B 310 ASP ALA LEU SER LEU VAL ARG ARG THR TRP LYS ASP ARG SEQRES 20 B 310 PRO MET ILE ASP TYR SER GLU GLN GLU PRO GLY GLU LYS SEQRES 21 B 310 PRO GLY VAL HIS ALA THR THR ILE ASN GLU GLU ASN PHE SEQRES 22 B 310 ARG ARG PHE VAL ASN GLU VAL ASP GLU VAL ASP ILE MET SEQRES 23 B 310 LEU GLU VAL LYS ASP LYS GLU ILE SER ALA LEU LYS ALA SEQRES 24 B 310 VAL LYS VAL LEU LYS GLU LEU ASN LYS LEU ASP HET MN A 290 1 HET MN B 290 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *577(H2 O) HELIX 1 1 LYS A 21 LEU A 25 5 5 HELIX 2 2 SER A 26 HIS A 51 1 26 HELIX 3 3 ASN A 74 LEU A 79 1 6 HELIX 4 4 LEU A 79 ASN A 93 1 15 HELIX 5 5 ARG A 111 GLY A 133 1 23 HELIX 6 6 GLY A 148 ARG A 161 1 14 HELIX 7 7 PRO A 164 LYS A 169 1 6 HELIX 8 8 SER A 181 GLY A 193 1 13 HELIX 9 9 ASN A 200 LEU A 206 1 7 HELIX 10 10 SER A 211 ARG A 221 1 11 HELIX 11 11 ASN A 248 VAL A 259 1 12 HELIX 12 12 LYS A 271 LEU A 285 1 15 HELIX 13 13 LYS B 21 LEU B 25 5 5 HELIX 14 14 SER B 26 HIS B 51 1 26 HELIX 15 15 ASN B 74 LEU B 79 1 6 HELIX 16 16 LEU B 79 ASN B 93 1 15 HELIX 17 17 ARG B 111 GLY B 133 1 23 HELIX 18 18 GLY B 148 ARG B 161 1 14 HELIX 19 19 PRO B 164 LYS B 169 1 6 HELIX 20 20 SER B 181 ARG B 191 1 11 HELIX 21 21 ASN B 200 LEU B 206 1 7 HELIX 22 22 SER B 211 ARG B 221 1 11 HELIX 23 23 ASN B 248 VAL B 259 1 12 HELIX 24 24 LYS B 271 LEU B 285 1 15 SHEET 1 A 9 MET A 1 VAL A 6 0 SHEET 2 A 9 PHE A 55 ARG A 57 1 O ARG A 57 N TYR A 5 SHEET 3 A 9 ARG A 96 MET A 99 1 O SER A 98 N PHE A 56 SHEET 4 A 9 LYS A 137 HIS A 141 1 O GLN A 139 N MET A 99 SHEET 5 A 9 LEU A 171 GLU A 174 1 O VAL A 172 N ILE A 140 SHEET 6 A 9 VAL A 196 ASP A 199 1 O ILE A 197 N ILE A 173 SHEET 7 A 9 MET A 228 TYR A 231 1 O ASP A 230 N PHE A 198 SHEET 8 A 9 VAL A 262 LEU A 266 1 O MET A 265 N ILE A 229 SHEET 9 A 9 MET A 1 VAL A 6 1 N ARG A 2 O ILE A 264 SHEET 1 B 9 ARG B 2 VAL B 6 0 SHEET 2 B 9 PHE B 55 ARG B 57 1 O ARG B 57 N TYR B 5 SHEET 3 B 9 ARG B 96 MET B 99 1 O SER B 98 N PHE B 56 SHEET 4 B 9 LYS B 137 HIS B 141 1 O GLN B 139 N MET B 99 SHEET 5 B 9 LEU B 171 GLU B 174 1 O VAL B 172 N ILE B 138 SHEET 6 B 9 VAL B 196 ASP B 199 1 O ILE B 197 N ILE B 173 SHEET 7 B 9 MET B 228 TYR B 231 1 O ASP B 230 N PHE B 198 SHEET 8 B 9 ASP B 263 LEU B 266 1 O MET B 265 N TYR B 231 SHEET 9 B 9 ARG B 2 VAL B 6 1 N ARG B 2 O ILE B 264 SSBOND 1 CYS A 14 CYS A 40 1555 1555 2.04 SSBOND 2 CYS B 14 CYS B 40 1555 1555 2.13 LINK OE2 GLU A 174 MN MN A 290 1555 1555 2.22 LINK OD2 ASP A 199 MN MN A 290 1555 1555 1.95 LINK OD2 ASP A 230 MN MN A 290 1555 1555 2.79 LINK OE1 GLU A 267 MN MN A 290 1555 1555 2.29 LINK MN MN A 290 O HOH A 538 1555 1555 2.39 LINK OE2 GLU B 174 MN MN B 290 1555 1555 2.16 LINK OD2 ASP B 199 MN MN B 290 1555 1555 2.05 LINK OE1 GLU B 267 MN MN B 290 1555 1555 2.25 LINK MN MN B 290 O HOH B 441 1555 1555 2.47 SITE 1 AC1 6 GLU A 174 ASP A 199 HIS A 202 ASP A 230 SITE 2 AC1 6 GLU A 267 HOH A 538 SITE 1 AC2 5 GLU B 174 ASP B 199 ASP B 230 GLU B 267 SITE 2 AC2 5 HOH B 441 CRYST1 42.075 53.585 77.395 102.10 93.02 111.77 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023767 0.009489 0.003710 0.00000 SCALE2 0.000000 0.020094 0.005121 0.00000 SCALE3 0.000000 0.000000 0.013352 0.00000