HEADER TOXIN/ANTITOXIN 09-AUG-11 3TCJ TITLE CCDB DIMER FROM V. FISHERI IN COMPLEX WITH ONE C-TERMINAL DOMAIN OF F- TITLE 2 PLASMID CCDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CCDB; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN CCDA; COMPND 7 CHAIN: T; COMPND 8 FRAGMENT: UNP RESIDUES 37-72; COMPND 9 SYNONYM: LYNA, PROTEIN H, PROTEIN LETA; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALIIVIBRIO FISCHERI; SOURCE 3 ORGANISM_TAXID: 668; SOURCE 4 GENE: CCDB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B462; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKK223-3; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 13 ORGANISM_TAXID: 83334 KEYWDS ALPHA+BETA SH3 DOMAIN INTRINSICALLY DISORDERED, TOXIN-ANTITOXIN KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.DE JONGE,R.LORIS REVDAT 4 13-SEP-23 3TCJ 1 REMARK REVDAT 3 22-OCT-14 3TCJ 1 JRNL REVDAT 2 08-OCT-14 3TCJ 1 AUTHOR REVDAT 1 15-AUG-12 3TCJ 0 JRNL AUTH I.DROBNAK,N.DE JONGE,S.HAESAERTS,G.VESNAVER,R.LORIS,J.LAH JRNL TITL ENERGETIC BASIS OF UNCOUPLING FOLDING FROM BINDING FOR AN JRNL TITL 2 INTRINSICALLY DISORDERED PROTEIN. JRNL REF J.AM.CHEM.SOC. V. 135 1288 2013 JRNL REFN ISSN 0002-7863 JRNL PMID 23289531 JRNL DOI 10.1021/JA305081B REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.DE JONGE,L.BUTS,J.VANGELOOVEN,N.MINE,L.VAN MELDEREN, REMARK 1 AUTH 2 L.WYNS,R.LORIS REMARK 1 TITL PURIFICATION AND CRYSTALLIZATION OF VIBRIO FISCHERI CCDB AND REMARK 1 TITL 2 ITS COMPLEXES WITH FRAGMENTS OF GYRASE AND CCDA. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 63 356 2007 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 17401216 REMARK 1 DOI 10.1107/S1744309107012092 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 17993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.4713 - 3.6918 1.00 2687 121 0.1676 0.2247 REMARK 3 2 3.6918 - 2.9335 1.00 2546 136 0.1911 0.2310 REMARK 3 3 2.9335 - 2.5636 1.00 2497 143 0.2066 0.2703 REMARK 3 4 2.5636 - 2.3296 0.98 2468 117 0.2018 0.2676 REMARK 3 5 2.3296 - 2.1629 0.95 2355 140 0.1957 0.2464 REMARK 3 6 2.1629 - 2.0355 0.94 2339 129 0.2095 0.3026 REMARK 3 7 2.0355 - 1.9337 0.89 2187 128 0.2277 0.2763 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.29 REMARK 3 B_SOL : 35.99 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.22220 REMARK 3 B22 (A**2) : 5.00820 REMARK 3 B33 (A**2) : -1.78600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1901 REMARK 3 ANGLE : 0.602 2593 REMARK 3 CHIRALITY : 0.043 311 REMARK 3 PLANARITY : 0.002 334 REMARK 3 DIHEDRAL : 15.607 681 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:21) REMARK 3 ORIGIN FOR THE GROUP (A): 44.8935 55.6952 21.9782 REMARK 3 T TENSOR REMARK 3 T11: 0.1274 T22: 0.1649 REMARK 3 T33: 0.1434 T12: 0.0045 REMARK 3 T13: 0.0175 T23: 0.0464 REMARK 3 L TENSOR REMARK 3 L11: 0.2509 L22: 0.6475 REMARK 3 L33: 0.9539 L12: -0.4019 REMARK 3 L13: 0.4034 L23: -0.8118 REMARK 3 S TENSOR REMARK 3 S11: 0.1846 S12: -0.1454 S13: 0.0229 REMARK 3 S21: 0.2969 S22: -0.1707 S23: -0.0852 REMARK 3 S31: -0.1741 S32: 0.0789 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 22:48) REMARK 3 ORIGIN FOR THE GROUP (A): 39.5150 53.8373 26.9955 REMARK 3 T TENSOR REMARK 3 T11: 0.1071 T22: 0.0866 REMARK 3 T33: 0.1051 T12: 0.0030 REMARK 3 T13: -0.0037 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.6742 L22: 0.5575 REMARK 3 L33: 1.4962 L12: 0.0485 REMARK 3 L13: -0.8589 L23: -0.4115 REMARK 3 S TENSOR REMARK 3 S11: -0.0543 S12: 0.3177 S13: 0.1770 REMARK 3 S21: 0.1120 S22: -0.0138 S23: -0.0264 REMARK 3 S31: -0.0260 S32: -0.0118 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 49:79) REMARK 3 ORIGIN FOR THE GROUP (A): 45.4950 51.0753 29.9684 REMARK 3 T TENSOR REMARK 3 T11: 0.1206 T22: 0.1723 REMARK 3 T33: 0.1367 T12: 0.0169 REMARK 3 T13: 0.0106 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.5682 L22: 1.3958 REMARK 3 L33: 0.7787 L12: -0.2804 REMARK 3 L13: 0.5355 L23: -1.0220 REMARK 3 S TENSOR REMARK 3 S11: 0.0340 S12: 0.2987 S13: -0.1690 REMARK 3 S21: -0.0032 S22: -0.0599 S23: 0.0202 REMARK 3 S31: -0.0855 S32: 0.1589 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 80:105) REMARK 3 ORIGIN FOR THE GROUP (A): 38.8532 47.1010 30.7383 REMARK 3 T TENSOR REMARK 3 T11: 0.1809 T22: 0.1012 REMARK 3 T33: 0.1218 T12: -0.0012 REMARK 3 T13: 0.0122 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 0.2036 L22: 0.5781 REMARK 3 L33: 1.0736 L12: 0.1785 REMARK 3 L13: -0.0129 L23: 0.0480 REMARK 3 S TENSOR REMARK 3 S11: -0.0764 S12: 0.0782 S13: -0.2158 REMARK 3 S21: -0.0176 S22: -0.0865 S23: -0.0566 REMARK 3 S31: 0.6575 S32: -0.3189 S33: -0.0007 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 2:42) REMARK 3 ORIGIN FOR THE GROUP (A): 34.6438 66.0989 41.6767 REMARK 3 T TENSOR REMARK 3 T11: 0.1093 T22: 0.0719 REMARK 3 T33: 0.1388 T12: -0.0222 REMARK 3 T13: 0.0151 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 1.3186 L22: 0.8437 REMARK 3 L33: 1.1083 L12: 0.3664 REMARK 3 L13: 0.4884 L23: 1.2194 REMARK 3 S TENSOR REMARK 3 S11: -0.0253 S12: 0.0116 S13: 0.2393 REMARK 3 S21: 0.0217 S22: 0.0683 S23: -0.1957 REMARK 3 S31: -0.1630 S32: 0.2483 S33: 0.0028 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 43:53) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7686 65.1103 32.7600 REMARK 3 T TENSOR REMARK 3 T11: 0.2579 T22: 0.4741 REMARK 3 T33: 0.3696 T12: 0.0043 REMARK 3 T13: -0.0693 T23: 0.1559 REMARK 3 L TENSOR REMARK 3 L11: -0.0841 L22: 0.1600 REMARK 3 L33: 0.1275 L12: -0.0702 REMARK 3 L13: -0.0220 L23: 0.1108 REMARK 3 S TENSOR REMARK 3 S11: 0.2326 S12: 1.1840 S13: -0.1503 REMARK 3 S21: -0.8317 S22: -0.3626 S23: 0.9129 REMARK 3 S31: 0.3152 S32: -0.2157 S33: -0.0048 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 54:86) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1031 66.3614 41.1739 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.1575 REMARK 3 T33: 0.1542 T12: -0.0033 REMARK 3 T13: 0.0235 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.6016 L22: 1.7104 REMARK 3 L33: 1.1862 L12: -0.2082 REMARK 3 L13: 0.5538 L23: 0.2035 REMARK 3 S TENSOR REMARK 3 S11: -0.1232 S12: -0.0211 S13: 0.0743 REMARK 3 S21: -0.0553 S22: 0.1223 S23: 0.0140 REMARK 3 S31: -0.1582 S32: -0.0661 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 87:105) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8152 54.0055 40.8676 REMARK 3 T TENSOR REMARK 3 T11: 0.1202 T22: 0.1077 REMARK 3 T33: 0.1346 T12: -0.0139 REMARK 3 T13: 0.0129 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 0.4299 L22: 0.5121 REMARK 3 L33: 0.1667 L12: 0.2747 REMARK 3 L13: -0.0018 L23: 0.0179 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: 0.0468 S13: 0.0273 REMARK 3 S21: 0.1835 S22: 0.0291 S23: -0.0272 REMARK 3 S31: 0.3386 S32: -0.2389 S33: 0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN T AND RESID 40:47) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0113 50.1352 22.5867 REMARK 3 T TENSOR REMARK 3 T11: 0.2543 T22: 0.4932 REMARK 3 T33: 0.3173 T12: -0.0626 REMARK 3 T13: -0.0169 T23: -0.0928 REMARK 3 L TENSOR REMARK 3 L11: -0.0081 L22: 0.1497 REMARK 3 L33: 0.1785 L12: 0.0517 REMARK 3 L13: 0.0438 L23: 0.0247 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: 1.1865 S13: -0.9200 REMARK 3 S21: -0.2025 S22: 0.1619 S23: 0.8023 REMARK 3 S31: 0.1667 S32: 0.1528 S33: -0.0010 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN T AND RESID 48:57) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3874 61.9933 23.5829 REMARK 3 T TENSOR REMARK 3 T11: 0.4604 T22: 0.3484 REMARK 3 T33: 0.2892 T12: -0.1176 REMARK 3 T13: -0.0143 T23: 0.0391 REMARK 3 L TENSOR REMARK 3 L11: 0.0841 L22: 0.0731 REMARK 3 L33: 0.0420 L12: -0.0077 REMARK 3 L13: -0.0225 L23: -0.1895 REMARK 3 S TENSOR REMARK 3 S11: 0.0171 S12: 0.3371 S13: -0.6072 REMARK 3 S21: -0.7199 S22: 0.3742 S23: 0.1689 REMARK 3 S31: -0.6036 S32: 0.5716 S33: -0.0014 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN T AND RESID 58:63) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9213 71.7120 26.1644 REMARK 3 T TENSOR REMARK 3 T11: 0.8952 T22: 0.4239 REMARK 3 T33: 0.3297 T12: -0.3305 REMARK 3 T13: 0.0093 T23: 0.1655 REMARK 3 L TENSOR REMARK 3 L11: 0.0395 L22: 0.0051 REMARK 3 L33: 0.0202 L12: -0.0158 REMARK 3 L13: 0.0164 L23: -0.0065 REMARK 3 S TENSOR REMARK 3 S11: -0.0837 S12: 0.1160 S13: -0.2886 REMARK 3 S21: 0.5156 S22: -0.1992 S23: 0.3481 REMARK 3 S31: -0.2608 S32: -0.1055 S33: 0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN T AND RESID 64:72) REMARK 3 ORIGIN FOR THE GROUP (A): 38.9205 66.8106 30.4333 REMARK 3 T TENSOR REMARK 3 T11: 0.4848 T22: 0.4900 REMARK 3 T33: 0.5319 T12: -0.0053 REMARK 3 T13: 0.2044 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: -0.0030 L22: 0.0258 REMARK 3 L33: 0.0497 L12: 0.0816 REMARK 3 L13: -0.1520 L23: -0.0035 REMARK 3 S TENSOR REMARK 3 S11: 0.4096 S12: -0.1485 S13: -0.6568 REMARK 3 S21: -1.5195 S22: 0.0394 S23: -1.3948 REMARK 3 S31: 0.2901 S32: 1.6056 S33: 0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TCJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8080 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18030 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45200 REMARK 200 R SYM FOR SHELL (I) : 0.04520 REMARK 200 FOR SHELL : 4.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3JRZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG4000, 0.1M CH3COONA.3H2O, PH REMARK 280 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.43200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.97550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.28050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.97550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.43200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.28050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HETERODIMER CONSISTING OF ONE CCDB DIMER TO WHICH ONE REMARK 300 CCDA37-72 FRAGMENT IS BOUND. THE BIOLOGICAL UNIT CORRESPONDS TO THE REMARK 300 ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 LYS B 48 REMARK 465 ARG T 37 REMARK 465 ARG T 38 REMARK 465 LEU T 39 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 12 CB CG CD CE NZ REMARK 470 LYS A 48 CE NZ REMARK 470 MET A 72 CE REMARK 470 LYS A 78 CD CE NZ REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 THR A 103 CG2 REMARK 470 LYS B 12 CD CE NZ REMARK 470 LEU B 28 CD1 REMARK 470 ASN B 31 CG OD1 ND2 REMARK 470 ILE B 43 CD1 REMARK 470 GLU B 44 CB CG CD OE1 OE2 REMARK 470 ASP B 47 CG OD1 OD2 REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 SER B 52 CB OG REMARK 470 ARG T 40 CG CD NE CZ NH1 NH2 REMARK 470 GLU T 50 CG CD OE1 OE2 REMARK 470 GLU T 54 CG CD OE1 OE2 REMARK 470 ARG T 57 CD NE CZ NH1 NH2 REMARK 470 GLU T 60 CD OE1 OE2 REMARK 470 MET T 61 CG SD CE REMARK 470 SER T 64 OG REMARK 470 GLU T 68 CG CD OE1 OE2 REMARK 470 ASP T 71 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 4 -0.58 80.02 REMARK 500 PHE B 4 3.99 80.12 REMARK 500 ASP T 71 49.15 -99.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 106 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3JRZ RELATED DB: PDB REMARK 900 CCDBVFI-FORMII-PH5.6 REMARK 900 RELATED ID: 3JSC RELATED DB: PDB REMARK 900 CCDBVFI-FORMI-PH7.0 REMARK 900 RELATED ID: 3KU8 RELATED DB: PDB REMARK 900 CCDBVFI:GYRA14EC REMARK 900 RELATED ID: 3KUA RELATED DB: PDB REMARK 900 CCDBVFI:GYRA14VFI REMARK 900 RELATED ID: 3HPW RELATED DB: PDB REMARK 900 F PLASMID CCDB IN COMPLEX WITH F-PLASMID CCDA C-TERMINAL DOMAIN (2: REMARK 900 2 STOICHIOMETRY) REMARK 900 RELATED ID: 3G7F RELATED DB: PDB REMARK 900 F PLASMID CCDB IN COMPLEX WITH F-PLASMID CCDA C-TERMINAL DOMAIN (2: REMARK 900 2 STOICHIOMETRY) DBREF 3TCJ A 1 105 UNP Q84B82 Q84B82_VIBFI 1 105 DBREF 3TCJ B 1 105 UNP Q84B82 Q84B82_VIBFI 1 105 DBREF 3TCJ T 37 72 UNP P62553 CCDA_ECO57 37 72 SEQRES 1 A 105 MET SER GLN PHE THR LEU TYR LYS ASN LYS ASP LYS SER SEQRES 2 A 105 SER ALA LYS THR TYR PRO TYR PHE VAL ASP VAL GLN SER SEQRES 3 A 105 ASP LEU LEU ASP ASN LEU ASN THR ARG LEU VAL ILE PRO SEQRES 4 A 105 LEU THR PRO ILE GLU LEU LEU ASP LYS LYS ALA PRO SER SEQRES 5 A 105 HIS LEU CYS PRO THR ILE HIS ILE ASP GLU GLY ASP PHE SEQRES 6 A 105 ILE MET LEU THR GLN GLN MET THR SER VAL PRO VAL LYS SEQRES 7 A 105 ILE LEU SER GLU PRO VAL ASN GLU LEU SER THR PHE ARG SEQRES 8 A 105 ASN GLU ILE ILE ALA ALA ILE ASP PHE LEU ILE THR GLY SEQRES 9 A 105 ILE SEQRES 1 B 105 MET SER GLN PHE THR LEU TYR LYS ASN LYS ASP LYS SER SEQRES 2 B 105 SER ALA LYS THR TYR PRO TYR PHE VAL ASP VAL GLN SER SEQRES 3 B 105 ASP LEU LEU ASP ASN LEU ASN THR ARG LEU VAL ILE PRO SEQRES 4 B 105 LEU THR PRO ILE GLU LEU LEU ASP LYS LYS ALA PRO SER SEQRES 5 B 105 HIS LEU CYS PRO THR ILE HIS ILE ASP GLU GLY ASP PHE SEQRES 6 B 105 ILE MET LEU THR GLN GLN MET THR SER VAL PRO VAL LYS SEQRES 7 B 105 ILE LEU SER GLU PRO VAL ASN GLU LEU SER THR PHE ARG SEQRES 8 B 105 ASN GLU ILE ILE ALA ALA ILE ASP PHE LEU ILE THR GLY SEQRES 9 B 105 ILE SEQRES 1 T 36 ARG ARG LEU ARG ALA GLU ARG TRP LYS ALA GLU ASN GLN SEQRES 2 T 36 GLU GLY MET ALA GLU VAL ALA ARG PHE ILE GLU MET ASN SEQRES 3 T 36 GLY SER PHE ALA ASP GLU ASN ARG ASP TRP HET ACT B 106 4 HETNAM ACT ACETATE ION FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 HOH *205(H2 O) HELIX 1 1 SER A 26 ASP A 30 5 5 HELIX 2 2 GLU A 44 LEU A 46 5 3 HELIX 3 3 THR A 69 MET A 72 5 4 HELIX 4 4 LYS A 78 LEU A 80 5 3 HELIX 5 5 PHE A 90 GLY A 104 1 15 HELIX 6 6 SER B 26 ASP B 30 5 5 HELIX 7 7 GLU B 44 LEU B 46 5 3 HELIX 8 8 THR B 69 MET B 72 5 4 HELIX 9 9 LYS B 78 LEU B 80 5 3 HELIX 10 10 PHE B 90 GLY B 104 1 15 HELIX 11 11 ALA T 41 ASN T 48 1 8 HELIX 12 12 ASN T 48 GLY T 63 1 16 HELIX 13 13 SER T 64 ARG T 70 1 7 SHEET 1 A 4 THR A 57 ILE A 60 0 SHEET 2 A 4 GLY A 63 MET A 67 -1 O PHE A 65 N ILE A 58 SHEET 3 A 4 THR A 34 PRO A 42 -1 N THR A 41 O ILE A 66 SHEET 4 A 4 THR A 73 PRO A 76 -1 O VAL A 75 N ARG A 35 SHEET 1 B 6 THR A 57 ILE A 60 0 SHEET 2 B 6 GLY A 63 MET A 67 -1 O PHE A 65 N ILE A 58 SHEET 3 B 6 THR A 34 PRO A 42 -1 N THR A 41 O ILE A 66 SHEET 4 B 6 TYR A 20 ASP A 23 -1 N TYR A 20 O LEU A 40 SHEET 5 B 6 THR A 5 LYS A 8 -1 N TYR A 7 O PHE A 21 SHEET 6 B 6 PRO A 83 GLU A 86 -1 O ASN A 85 N LEU A 6 SHEET 1 C 4 THR B 57 ILE B 60 0 SHEET 2 C 4 GLY B 63 MET B 67 -1 O PHE B 65 N ILE B 58 SHEET 3 C 4 THR B 34 PRO B 42 -1 N THR B 41 O ILE B 66 SHEET 4 C 4 THR B 73 PRO B 76 -1 O VAL B 75 N ARG B 35 SHEET 1 D 6 THR B 57 ILE B 60 0 SHEET 2 D 6 GLY B 63 MET B 67 -1 O PHE B 65 N ILE B 58 SHEET 3 D 6 THR B 34 PRO B 42 -1 N THR B 41 O ILE B 66 SHEET 4 D 6 TYR B 20 ASP B 23 -1 N TYR B 20 O LEU B 40 SHEET 5 D 6 THR B 5 LYS B 8 -1 N TYR B 7 O PHE B 21 SHEET 6 D 6 PRO B 83 GLU B 86 -1 O ASN B 85 N LEU B 6 SITE 1 AC1 2 HOH A 132 GLY B 104 CRYST1 46.864 62.561 81.951 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021338 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015984 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012202 0.00000