data_3TD0 # _entry.id 3TD0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3TD0 pdb_00003td0 10.2210/pdb3td0/pdb NDB NA1270 ? ? RCSB RCSB067330 ? ? WWPDB D_1000067330 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-12-07 2 'Structure model' 1 1 2014-03-12 3 'Structure model' 1 2 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.value' 21 3 'Structure model' '_struct_conn.pdbx_dist_value' 22 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 23 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 31 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3TD0 _pdbx_database_status.recvd_initial_deposition_date 2011-08-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3BNL 'Crystal structure of the bacterial wild-type ribosomal decoding site' unspecified PDB 3TD1 'Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticin' unspecified # _audit_author.name 'Kondo, J.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;A structural basis for the antibiotic resistance conferred by an A1408G mutation in 16S rRNA and for the antiprotozoal activity of aminoglycosides ; _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 51 _citation.page_first 465 _citation.page_last 468 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22110016 _citation.pdbx_database_id_DOI 10.1002/anie.201106084 # _citation_author.citation_id primary _citation_author.name 'Kondo, J.' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') ; 7450.304 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 7 ? ? ? ? 3 water nat water 18.015 199 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'UUGCGUCGCG(5BU)CGACGAAGUCGC' _entity_poly.pdbx_seq_one_letter_code_can UUGCGUCGCGUCGACGAAGUCGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 G n 1 4 C n 1 5 G n 1 6 U n 1 7 C n 1 8 G n 1 9 C n 1 10 G n 1 11 5BU n 1 12 C n 1 13 G n 1 14 A n 1 15 C n 1 16 G n 1 17 A n 1 18 A n 1 19 G n 1 20 U n 1 21 C n 1 22 G n 1 23 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthetic RNA' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5BU 'RNA linking' n "5-BROMO-URIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O9 P' 403.077 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 ? ? ? A . n A 1 2 U 2 2 ? ? ? A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 C 7 7 7 C C A . n A 1 8 G 8 8 8 G G A . n A 1 9 C 9 9 9 C C A . n A 1 10 G 10 10 10 G G A . n A 1 11 5BU 11 11 11 5BU 5BU A . n A 1 12 C 12 12 12 C C A . n A 1 13 G 13 13 13 G G A . n A 1 14 A 14 14 14 A A A . n A 1 15 C 15 15 15 C C A . n A 1 16 G 16 16 16 G G A . n A 1 17 A 17 17 17 A A A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 C 21 21 21 C C A . n A 1 22 G 22 22 22 G G A . n A 1 23 C 23 23 23 C C A . n B 1 1 U 1 24 24 U U B . n B 1 2 U 2 25 25 U U B . n B 1 3 G 3 26 26 G G B . n B 1 4 C 4 27 27 C C B . n B 1 5 G 5 28 28 G G B . n B 1 6 U 6 29 29 U U B . n B 1 7 C 7 30 30 C C B . n B 1 8 G 8 31 31 G G B . n B 1 9 C 9 32 32 C C B . n B 1 10 G 10 33 33 G G B . n B 1 11 5BU 11 34 34 5BU 5BU B . n B 1 12 C 12 35 35 C C B . n B 1 13 G 13 36 36 G G B . n B 1 14 A 14 37 37 A A B . n B 1 15 C 15 38 38 C C B . n B 1 16 G 16 39 39 G G B . n B 1 17 A 17 40 40 A A B . n B 1 18 A 18 41 41 A A B . n B 1 19 G 19 42 42 G G B . n B 1 20 U 20 43 43 U U B . n B 1 21 C 21 44 44 C C B . n B 1 22 G 22 45 45 G G B . n B 1 23 C 23 46 46 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 1000 51 MG MO6 A . D 2 MG 1 2000 52 MG MO6 A . E 2 MG 1 3000 53 MG MO6 B . F 2 MG 1 4000 54 MG MO6 B . G 2 MG 1 5000 55 MG MO6 B . H 2 MG 1 6000 56 MG MO5 B . I 2 MG 1 7000 57 MG MO6 B . J 3 HOH 1 101 101 HOH HOH A . J 3 HOH 2 104 104 HOH HOH A . J 3 HOH 3 106 106 HOH HOH A . J 3 HOH 4 107 107 HOH HOH A . J 3 HOH 5 109 109 HOH HOH A . J 3 HOH 6 112 112 HOH HOH A . J 3 HOH 7 117 117 HOH HOH A . J 3 HOH 8 119 119 HOH HOH A . J 3 HOH 9 122 122 HOH HOH A . J 3 HOH 10 123 123 HOH HOH A . J 3 HOH 11 131 131 HOH HOH A . J 3 HOH 12 132 132 HOH HOH A . J 3 HOH 13 136 136 HOH HOH A . J 3 HOH 14 137 137 HOH HOH A . J 3 HOH 15 142 142 HOH HOH A . J 3 HOH 16 143 143 HOH HOH A . J 3 HOH 17 146 146 HOH HOH A . J 3 HOH 18 147 147 HOH HOH A . J 3 HOH 19 148 148 HOH HOH A . J 3 HOH 20 151 151 HOH HOH A . J 3 HOH 21 152 152 HOH HOH A . J 3 HOH 22 153 153 HOH HOH A . J 3 HOH 23 154 154 HOH HOH A . J 3 HOH 24 155 155 HOH HOH A . J 3 HOH 25 157 157 HOH HOH A . J 3 HOH 26 158 158 HOH HOH A . J 3 HOH 27 162 162 HOH HOH A . J 3 HOH 28 163 163 HOH HOH A . J 3 HOH 29 164 164 HOH HOH A . J 3 HOH 30 167 167 HOH HOH A . J 3 HOH 31 168 168 HOH HOH A . J 3 HOH 32 169 169 HOH HOH A . J 3 HOH 33 170 170 HOH HOH A . J 3 HOH 34 172 172 HOH HOH A . J 3 HOH 35 173 173 HOH HOH A . J 3 HOH 36 175 175 HOH HOH A . J 3 HOH 37 177 177 HOH HOH A . J 3 HOH 38 181 181 HOH HOH A . J 3 HOH 39 182 182 HOH HOH A . J 3 HOH 40 183 183 HOH HOH A . J 3 HOH 41 186 186 HOH HOH A . J 3 HOH 42 189 189 HOH HOH A . J 3 HOH 43 190 190 HOH HOH A . J 3 HOH 44 192 192 HOH HOH A . J 3 HOH 45 196 196 HOH HOH A . J 3 HOH 46 197 197 HOH HOH A . J 3 HOH 47 198 198 HOH HOH A . J 3 HOH 48 201 201 HOH HOH A . J 3 HOH 49 202 202 HOH HOH A . J 3 HOH 50 203 203 HOH HOH A . J 3 HOH 51 207 207 HOH HOH A . J 3 HOH 52 208 208 HOH HOH A . J 3 HOH 53 209 209 HOH HOH A . J 3 HOH 54 210 210 HOH HOH A . J 3 HOH 55 212 212 HOH HOH A . J 3 HOH 56 213 213 HOH HOH A . J 3 HOH 57 214 214 HOH HOH A . J 3 HOH 58 216 216 HOH HOH A . J 3 HOH 59 218 218 HOH HOH A . J 3 HOH 60 219 219 HOH HOH A . J 3 HOH 61 220 220 HOH HOH A . J 3 HOH 62 222 222 HOH HOH A . J 3 HOH 63 226 226 HOH HOH A . J 3 HOH 64 233 233 HOH HOH A . J 3 HOH 65 234 234 HOH HOH A . J 3 HOH 66 237 237 HOH HOH A . J 3 HOH 67 238 238 HOH HOH A . J 3 HOH 68 240 240 HOH HOH A . J 3 HOH 69 250 250 HOH HOH A . J 3 HOH 70 252 252 HOH HOH A . J 3 HOH 71 256 256 HOH HOH A . J 3 HOH 72 257 257 HOH HOH A . J 3 HOH 73 258 258 HOH HOH A . J 3 HOH 74 259 259 HOH HOH A . J 3 HOH 75 262 262 HOH HOH A . J 3 HOH 76 264 264 HOH HOH A . J 3 HOH 77 1002 51 HOH MO6 A . J 3 HOH 78 1004 51 HOH MO6 A . J 3 HOH 79 1005 51 HOH MO6 A . J 3 HOH 80 2001 52 HOH MO6 A . J 3 HOH 81 2002 52 HOH MO6 A . J 3 HOH 82 2003 52 HOH MO6 A . J 3 HOH 83 2004 52 HOH MO6 A . J 3 HOH 84 2005 52 HOH MO6 A . J 3 HOH 85 3004 53 HOH MO6 A . J 3 HOH 86 4002 54 HOH MO6 A . J 3 HOH 87 4006 54 HOH MO6 A . J 3 HOH 88 5001 55 HOH MO6 A . J 3 HOH 89 5006 55 HOH MO6 A . J 3 HOH 90 6002 56 HOH MO5 A . J 3 HOH 91 6005 56 HOH MO5 A . K 3 HOH 1 102 102 HOH HOH B . K 3 HOH 2 103 103 HOH HOH B . K 3 HOH 3 105 105 HOH HOH B . K 3 HOH 4 108 108 HOH HOH B . K 3 HOH 5 110 110 HOH HOH B . K 3 HOH 6 111 111 HOH HOH B . K 3 HOH 7 113 113 HOH HOH B . K 3 HOH 8 114 114 HOH HOH B . K 3 HOH 9 115 115 HOH HOH B . K 3 HOH 10 116 116 HOH HOH B . K 3 HOH 11 118 118 HOH HOH B . K 3 HOH 12 120 120 HOH HOH B . K 3 HOH 13 121 121 HOH HOH B . K 3 HOH 14 124 124 HOH HOH B . K 3 HOH 15 125 125 HOH HOH B . K 3 HOH 16 126 126 HOH HOH B . K 3 HOH 17 127 127 HOH HOH B . K 3 HOH 18 128 128 HOH HOH B . K 3 HOH 19 129 129 HOH HOH B . K 3 HOH 20 130 130 HOH HOH B . K 3 HOH 21 133 133 HOH HOH B . K 3 HOH 22 134 134 HOH HOH B . K 3 HOH 23 135 135 HOH HOH B . K 3 HOH 24 138 138 HOH HOH B . K 3 HOH 25 139 139 HOH HOH B . K 3 HOH 26 140 140 HOH HOH B . K 3 HOH 27 141 141 HOH HOH B . K 3 HOH 28 144 144 HOH HOH B . K 3 HOH 29 145 145 HOH HOH B . K 3 HOH 30 149 149 HOH HOH B . K 3 HOH 31 150 150 HOH HOH B . K 3 HOH 32 156 156 HOH HOH B . K 3 HOH 33 159 159 HOH HOH B . K 3 HOH 34 160 160 HOH HOH B . K 3 HOH 35 161 161 HOH HOH B . K 3 HOH 36 165 165 HOH HOH B . K 3 HOH 37 166 166 HOH HOH B . K 3 HOH 38 171 171 HOH HOH B . K 3 HOH 39 174 174 HOH HOH B . K 3 HOH 40 176 176 HOH HOH B . K 3 HOH 41 178 178 HOH HOH B . K 3 HOH 42 179 179 HOH HOH B . K 3 HOH 43 180 180 HOH HOH B . K 3 HOH 44 184 184 HOH HOH B . K 3 HOH 45 185 185 HOH HOH B . K 3 HOH 46 187 187 HOH HOH B . K 3 HOH 47 188 188 HOH HOH B . K 3 HOH 48 191 191 HOH HOH B . K 3 HOH 49 193 193 HOH HOH B . K 3 HOH 50 194 194 HOH HOH B . K 3 HOH 51 195 195 HOH HOH B . K 3 HOH 52 199 199 HOH HOH B . K 3 HOH 53 200 200 HOH HOH B . K 3 HOH 54 204 204 HOH HOH B . K 3 HOH 55 205 205 HOH HOH B . K 3 HOH 56 206 206 HOH HOH B . K 3 HOH 57 211 211 HOH HOH B . K 3 HOH 58 215 215 HOH HOH B . K 3 HOH 59 217 217 HOH HOH B . K 3 HOH 60 221 221 HOH HOH B . K 3 HOH 61 223 223 HOH HOH B . K 3 HOH 62 224 224 HOH HOH B . K 3 HOH 63 225 225 HOH HOH B . K 3 HOH 64 227 227 HOH HOH B . K 3 HOH 65 228 228 HOH HOH B . K 3 HOH 66 229 229 HOH HOH B . K 3 HOH 67 230 230 HOH HOH B . K 3 HOH 68 231 231 HOH HOH B . K 3 HOH 69 232 232 HOH HOH B . K 3 HOH 70 235 235 HOH HOH B . K 3 HOH 71 236 236 HOH HOH B . K 3 HOH 72 239 239 HOH HOH B . K 3 HOH 73 241 241 HOH HOH B . K 3 HOH 74 248 248 HOH HOH B . K 3 HOH 75 249 249 HOH HOH B . K 3 HOH 76 251 251 HOH HOH B . K 3 HOH 77 253 253 HOH HOH B . K 3 HOH 78 254 254 HOH HOH B . K 3 HOH 79 255 255 HOH HOH B . K 3 HOH 80 260 260 HOH HOH B . K 3 HOH 81 261 261 HOH HOH B . K 3 HOH 82 263 263 HOH HOH B . K 3 HOH 83 1001 51 HOH MO6 B . K 3 HOH 84 1003 51 HOH MO6 B . K 3 HOH 85 1006 51 HOH MO6 B . K 3 HOH 86 2006 52 HOH MO6 B . K 3 HOH 87 3001 53 HOH MO6 B . K 3 HOH 88 3002 53 HOH MO6 B . K 3 HOH 89 3003 53 HOH MO6 B . K 3 HOH 90 3005 53 HOH MO6 B . K 3 HOH 91 3006 53 HOH MO6 B . K 3 HOH 92 4001 54 HOH MO6 B . K 3 HOH 93 4003 54 HOH MO6 B . K 3 HOH 94 4004 54 HOH MO6 B . K 3 HOH 95 4005 54 HOH MO6 B . K 3 HOH 96 5002 55 HOH MO6 B . K 3 HOH 97 5003 55 HOH MO6 B . K 3 HOH 98 5004 55 HOH MO6 B . K 3 HOH 99 5005 55 HOH MO6 B . K 3 HOH 100 6001 56 HOH MO5 B . K 3 HOH 101 6003 56 HOH MO5 B . K 3 HOH 102 6004 56 HOH MO5 B . K 3 HOH 103 7001 57 HOH MO6 B . K 3 HOH 104 7002 57 HOH MO6 B . K 3 HOH 105 7003 57 HOH MO6 B . K 3 HOH 106 7004 57 HOH MO6 B . K 3 HOH 107 7005 57 HOH MO6 B . K 3 HOH 108 7006 57 HOH MO6 B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX 'model building' . ? 1 CNS refinement . ? 2 CrystalClear 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 PHENIX phasing . ? 5 # _cell.entry_id 3TD0 _cell.length_a 45.520 _cell.length_b 46.730 _cell.length_c 55.290 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3TD0 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3TD0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_percent_sol 37.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;Sodium Cacodylate, Spermine tetrahydrochloride, Magnesium chloride, 2-methyl-2,4-pentanediol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 210r' 2011-02-19 ? 2 CCD 'ADSC QUANTUM 210r' 2011-12-06 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M ;Numerical link type Si(111) double crystal monochromator, direct water cooling using micro-channel (1st crystal), indirect water cooling (2nd crystal) ; 'SINGLE WAVELENGTH' x-ray 2 1 M ;Numerical link type Si(111) double crystal monochromator, direct water cooling using micro-channel (1st crystal), indirect water cooling (2nd crystal) ; MAD x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0 1.0 2 0.91921 1.0 3 0.92100 1.0 4 0.90615 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'PHOTON FACTORY BEAMLINE BL-5A' 'Photon Factory' BL-5A ? 1.0 2 SYNCHROTRON 'PHOTON FACTORY BEAMLINE BL-5A' 'Photon Factory' BL-5A ? '0.91921, 0.92100, 0.90615' # _reflns.entry_id 3TD0 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35.7 _reflns.d_resolution_high 1.6 _reflns.number_obs 16037 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _reflns_shell.d_res_high 1.6 _reflns_shell.d_res_low 1.7 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.235 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 7.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.entry_id 3TD0 _refine.ls_number_reflns_obs 16031 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.7 _refine.ls_d_res_high 1.6 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.220 _refine.ls_R_factor_R_free 0.256 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1,2 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 939 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 199 _refine_hist.number_atoms_total 1145 _refine_hist.d_res_high 1.6 _refine_hist.d_res_low 35.7 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d 0.005 ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg 0.8 ? ? ? ? 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3TD0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3TD0 _struct.title 'Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3TD0 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'Decoding, ribosome, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 3 ? K N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3TD0 _struct_ref.pdbx_db_accession 3TD0 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3TD0 A 1 ? 23 ? 3TD0 1 ? 23 ? 1 23 2 1 3TD0 B 1 ? 23 ? 3TD0 24 ? 46 ? 24 46 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3260 ? 1 MORE -8 ? 1 'SSA (A^2)' 8110 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 10 "O3'" ? ? ? 1_555 A 5BU 11 P ? ? A G 10 A 5BU 11 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale2 covale both ? A 5BU 11 "O3'" ? ? ? 1_555 A C 12 P ? ? A 5BU 11 A C 12 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale3 covale both ? B G 10 "O3'" ? ? ? 1_555 B 5BU 11 P ? ? B G 33 B 5BU 34 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale4 covale both ? B 5BU 11 "O3'" ? ? ? 1_555 B C 12 P ? ? B 5BU 34 B C 35 1_555 ? ? ? ? ? ? ? 1.607 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 1000 A HOH 1002 1_555 ? ? ? ? ? ? ? 2.014 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 1000 A HOH 1004 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 1000 A HOH 1005 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 1000 B HOH 1001 1_555 ? ? ? ? ? ? ? 2.078 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 1000 B HOH 1003 1_555 ? ? ? ? ? ? ? 2.099 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 1000 B HOH 1006 1_555 ? ? ? ? ? ? ? 2.118 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 2000 A HOH 2001 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 2000 A HOH 2002 1_555 ? ? ? ? ? ? ? 2.016 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 2000 A HOH 2003 1_555 ? ? ? ? ? ? ? 2.092 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 2000 A HOH 2004 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 2000 A HOH 2005 1_555 ? ? ? ? ? ? ? 2.128 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 2000 B HOH 2006 1_555 ? ? ? ? ? ? ? 2.116 ? ? metalc13 metalc ? ? J HOH . O ? ? ? 1_555 E MG . MG ? ? A HOH 3004 B MG 3000 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc14 metalc ? ? J HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 4002 B MG 4000 1_555 ? ? ? ? ? ? ? 2.022 ? ? metalc15 metalc ? ? J HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 4006 B MG 4000 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc16 metalc ? ? J HOH . O ? ? ? 1_555 G MG . MG ? ? A HOH 5001 B MG 5000 1_555 ? ? ? ? ? ? ? 2.077 ? ? metalc17 metalc ? ? J HOH . O ? ? ? 1_555 G MG . MG ? ? A HOH 5006 B MG 5000 1_555 ? ? ? ? ? ? ? 2.122 ? ? metalc18 metalc ? ? J HOH . O ? ? ? 1_555 H MG . MG ? ? A HOH 6002 B MG 6000 1_555 ? ? ? ? ? ? ? 2.017 ? ? metalc19 metalc ? ? J HOH . O ? ? ? 1_555 H MG . MG ? ? A HOH 6005 B MG 6000 1_555 ? ? ? ? ? ? ? 2.123 ? ? metalc20 metalc ? ? B U 2 OP1 ? ? ? 1_555 H MG . MG ? ? B U 25 B MG 6000 1_555 ? ? ? ? ? ? ? 2.270 ? ? metalc21 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 3000 B HOH 3001 1_555 ? ? ? ? ? ? ? 2.074 ? ? metalc22 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 3000 B HOH 3002 1_555 ? ? ? ? ? ? ? 2.013 ? ? metalc23 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 3000 B HOH 3003 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc24 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 3000 B HOH 3005 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc25 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 3000 B HOH 3006 1_555 ? ? ? ? ? ? ? 2.113 ? ? metalc26 metalc ? ? F MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 4000 B HOH 4001 1_555 ? ? ? ? ? ? ? 2.079 ? ? metalc27 metalc ? ? F MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 4000 B HOH 4003 1_555 ? ? ? ? ? ? ? 2.091 ? ? metalc28 metalc ? ? F MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 4000 B HOH 4004 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc29 metalc ? ? F MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 4000 B HOH 4005 1_555 ? ? ? ? ? ? ? 2.129 ? ? metalc30 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 5000 B HOH 5002 1_555 ? ? ? ? ? ? ? 2.013 ? ? metalc31 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 5000 B HOH 5003 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc32 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 5000 B HOH 5004 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc33 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 5000 B HOH 5005 1_555 ? ? ? ? ? ? ? 2.127 ? ? metalc34 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 6000 B HOH 6001 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc35 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 6000 B HOH 6003 1_555 ? ? ? ? ? ? ? 2.099 ? ? metalc36 metalc ? ? H MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 6000 B HOH 6004 1_555 ? ? ? ? ? ? ? 2.064 ? ? metalc37 metalc ? ? I MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 7000 B HOH 7001 1_555 ? ? ? ? ? ? ? 2.074 ? ? metalc38 metalc ? ? I MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 7000 B HOH 7002 1_555 ? ? ? ? ? ? ? 2.015 ? ? metalc39 metalc ? ? I MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 7000 B HOH 7003 1_555 ? ? ? ? ? ? ? 2.099 ? ? metalc40 metalc ? ? I MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 7000 B HOH 7004 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc41 metalc ? ? I MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 7000 B HOH 7005 1_555 ? ? ? ? ? ? ? 2.129 ? ? metalc42 metalc ? ? I MG . MG ? ? ? 1_555 K HOH . O ? ? B MG 7000 B HOH 7006 1_555 ? ? ? ? ? ? ? 2.122 ? ? hydrog1 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 23 N3 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 23 O2 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 23 N4 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 22 N1 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 22 O6 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 22 N2 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 21 N3 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 21 O2 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 21 N4 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 6 O4 ? ? ? 1_555 B U 20 N3 ? ? A U 6 B U 43 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog11 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 8 N1 ? ? ? 1_555 B A 17 N1 ? ? A G 8 B A 40 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog15 hydrog ? ? A G 8 O6 ? ? ? 1_555 B A 17 N6 ? ? A G 8 B A 40 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog16 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 16 N1 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 16 O6 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 16 N2 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A 5BU 11 N3 ? ? ? 1_555 B A 14 N1 ? ? A 5BU 11 B A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A 5BU 11 O4 ? ? ? 1_555 B A 14 N6 ? ? A 5BU 11 B A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 13 N1 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 13 O6 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 13 N2 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A A 14 N1 ? ? ? 1_555 B 5BU 11 N3 ? ? A A 14 B 5BU 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 14 N6 ? ? ? 1_555 B 5BU 11 O4 ? ? A A 14 B 5BU 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 17 N1 ? ? ? 1_555 B G 8 N1 ? ? A A 17 B G 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog39 hydrog ? ? A A 17 N6 ? ? ? 1_555 B G 8 O6 ? ? A A 17 B G 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog40 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A U 20 N3 ? ? ? 1_555 B U 6 O2 ? ? A U 20 B U 29 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog44 hydrog ? ? A U 20 O4 ? ? ? 1_555 B U 6 N3 ? ? A U 20 B U 29 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog45 hydrog ? ? A C 21 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 21 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 21 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 22 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 22 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 22 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 23 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 23 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 23 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? J HOH . ? A HOH 1002 ? 1_555 MG ? C MG . ? A MG 1000 ? 1_555 O ? J HOH . ? A HOH 1004 ? 1_555 90.2 ? 2 O ? J HOH . ? A HOH 1002 ? 1_555 MG ? C MG . ? A MG 1000 ? 1_555 O ? J HOH . ? A HOH 1005 ? 1_555 90.0 ? 3 O ? J HOH . ? A HOH 1004 ? 1_555 MG ? C MG . ? A MG 1000 ? 1_555 O ? J HOH . ? A HOH 1005 ? 1_555 89.8 ? 4 O ? J HOH . ? A HOH 1002 ? 1_555 MG ? C MG . ? A MG 1000 ? 1_555 O ? K HOH . ? B HOH 1001 ? 1_555 179.8 ? 5 O ? J HOH . ? A HOH 1004 ? 1_555 MG ? C MG . ? A MG 1000 ? 1_555 O ? K HOH . ? B HOH 1001 ? 1_555 89.8 ? 6 O ? J HOH . ? A HOH 1005 ? 1_555 MG ? C MG . ? A MG 1000 ? 1_555 O ? K HOH . ? B HOH 1001 ? 1_555 89.8 ? 7 O ? J HOH . ? A HOH 1002 ? 1_555 MG ? C MG . ? A MG 1000 ? 1_555 O ? K HOH . ? B HOH 1003 ? 1_555 90.0 ? 8 O ? J HOH . ? A HOH 1004 ? 1_555 MG ? C MG . ? A MG 1000 ? 1_555 O ? K HOH . ? B HOH 1003 ? 1_555 179.8 ? 9 O ? J HOH . ? A HOH 1005 ? 1_555 MG ? C MG . ? A MG 1000 ? 1_555 O ? K HOH . ? B HOH 1003 ? 1_555 90.2 ? 10 O ? K HOH . ? B HOH 1001 ? 1_555 MG ? C MG . ? A MG 1000 ? 1_555 O ? K HOH . ? B HOH 1003 ? 1_555 90.0 ? 11 O ? J HOH . ? A HOH 1002 ? 1_555 MG ? C MG . ? A MG 1000 ? 1_555 O ? K HOH . ? B HOH 1006 ? 1_555 89.9 ? 12 O ? J HOH . ? A HOH 1004 ? 1_555 MG ? C MG . ? A MG 1000 ? 1_555 O ? K HOH . ? B HOH 1006 ? 1_555 90.0 ? 13 O ? J HOH . ? A HOH 1005 ? 1_555 MG ? C MG . ? A MG 1000 ? 1_555 O ? K HOH . ? B HOH 1006 ? 1_555 179.7 ? 14 O ? K HOH . ? B HOH 1001 ? 1_555 MG ? C MG . ? A MG 1000 ? 1_555 O ? K HOH . ? B HOH 1006 ? 1_555 90.4 ? 15 O ? K HOH . ? B HOH 1003 ? 1_555 MG ? C MG . ? A MG 1000 ? 1_555 O ? K HOH . ? B HOH 1006 ? 1_555 90.1 ? 16 O ? J HOH . ? A HOH 2001 ? 1_555 MG ? D MG . ? A MG 2000 ? 1_555 O ? J HOH . ? A HOH 2002 ? 1_555 179.7 ? 17 O ? J HOH . ? A HOH 2001 ? 1_555 MG ? D MG . ? A MG 2000 ? 1_555 O ? J HOH . ? A HOH 2003 ? 1_555 89.8 ? 18 O ? J HOH . ? A HOH 2002 ? 1_555 MG ? D MG . ? A MG 2000 ? 1_555 O ? J HOH . ? A HOH 2003 ? 1_555 90.0 ? 19 O ? J HOH . ? A HOH 2001 ? 1_555 MG ? D MG . ? A MG 2000 ? 1_555 O ? J HOH . ? A HOH 2004 ? 1_555 90.4 ? 20 O ? J HOH . ? A HOH 2002 ? 1_555 MG ? D MG . ? A MG 2000 ? 1_555 O ? J HOH . ? A HOH 2004 ? 1_555 89.8 ? 21 O ? J HOH . ? A HOH 2003 ? 1_555 MG ? D MG . ? A MG 2000 ? 1_555 O ? J HOH . ? A HOH 2004 ? 1_555 179.8 ? 22 O ? J HOH . ? A HOH 2001 ? 1_555 MG ? D MG . ? A MG 2000 ? 1_555 O ? J HOH . ? A HOH 2005 ? 1_555 89.3 ? 23 O ? J HOH . ? A HOH 2002 ? 1_555 MG ? D MG . ? A MG 2000 ? 1_555 O ? J HOH . ? A HOH 2005 ? 1_555 90.6 ? 24 O ? J HOH . ? A HOH 2003 ? 1_555 MG ? D MG . ? A MG 2000 ? 1_555 O ? J HOH . ? A HOH 2005 ? 1_555 89.5 ? 25 O ? J HOH . ? A HOH 2004 ? 1_555 MG ? D MG . ? A MG 2000 ? 1_555 O ? J HOH . ? A HOH 2005 ? 1_555 90.4 ? 26 O ? J HOH . ? A HOH 2001 ? 1_555 MG ? D MG . ? A MG 2000 ? 1_555 O ? K HOH . ? B HOH 2006 ? 1_555 90.2 ? 27 O ? J HOH . ? A HOH 2002 ? 1_555 MG ? D MG . ? A MG 2000 ? 1_555 O ? K HOH . ? B HOH 2006 ? 1_555 89.9 ? 28 O ? J HOH . ? A HOH 2003 ? 1_555 MG ? D MG . ? A MG 2000 ? 1_555 O ? K HOH . ? B HOH 2006 ? 1_555 90.7 ? 29 O ? J HOH . ? A HOH 2004 ? 1_555 MG ? D MG . ? A MG 2000 ? 1_555 O ? K HOH . ? B HOH 2006 ? 1_555 89.5 ? 30 O ? J HOH . ? A HOH 2005 ? 1_555 MG ? D MG . ? A MG 2000 ? 1_555 O ? K HOH . ? B HOH 2006 ? 1_555 179.5 ? 31 O ? J HOH . ? A HOH 3004 ? 1_555 MG ? E MG . ? B MG 3000 ? 1_555 O ? K HOH . ? B HOH 3001 ? 1_555 89.6 ? 32 O ? J HOH . ? A HOH 3004 ? 1_555 MG ? E MG . ? B MG 3000 ? 1_555 O ? K HOH . ? B HOH 3002 ? 1_555 90.5 ? 33 O ? K HOH . ? B HOH 3001 ? 1_555 MG ? E MG . ? B MG 3000 ? 1_555 O ? K HOH . ? B HOH 3002 ? 1_555 179.9 ? 34 O ? J HOH . ? A HOH 3004 ? 1_555 MG ? E MG . ? B MG 3000 ? 1_555 O ? K HOH . ? B HOH 3003 ? 1_555 179.2 ? 35 O ? K HOH . ? B HOH 3001 ? 1_555 MG ? E MG . ? B MG 3000 ? 1_555 O ? K HOH . ? B HOH 3003 ? 1_555 90.1 ? 36 O ? K HOH . ? B HOH 3002 ? 1_555 MG ? E MG . ? B MG 3000 ? 1_555 O ? K HOH . ? B HOH 3003 ? 1_555 89.8 ? 37 O ? J HOH . ? A HOH 3004 ? 1_555 MG ? E MG . ? B MG 3000 ? 1_555 O ? K HOH . ? B HOH 3005 ? 1_555 90.4 ? 38 O ? K HOH . ? B HOH 3001 ? 1_555 MG ? E MG . ? B MG 3000 ? 1_555 O ? K HOH . ? B HOH 3005 ? 1_555 89.7 ? 39 O ? K HOH . ? B HOH 3002 ? 1_555 MG ? E MG . ? B MG 3000 ? 1_555 O ? K HOH . ? B HOH 3005 ? 1_555 90.4 ? 40 O ? K HOH . ? B HOH 3003 ? 1_555 MG ? E MG . ? B MG 3000 ? 1_555 O ? K HOH . ? B HOH 3005 ? 1_555 90.3 ? 41 O ? J HOH . ? A HOH 3004 ? 1_555 MG ? E MG . ? B MG 3000 ? 1_555 O ? K HOH . ? B HOH 3006 ? 1_555 89.7 ? 42 O ? K HOH . ? B HOH 3001 ? 1_555 MG ? E MG . ? B MG 3000 ? 1_555 O ? K HOH . ? B HOH 3006 ? 1_555 90.5 ? 43 O ? K HOH . ? B HOH 3002 ? 1_555 MG ? E MG . ? B MG 3000 ? 1_555 O ? K HOH . ? B HOH 3006 ? 1_555 89.4 ? 44 O ? K HOH . ? B HOH 3003 ? 1_555 MG ? E MG . ? B MG 3000 ? 1_555 O ? K HOH . ? B HOH 3006 ? 1_555 89.5 ? 45 O ? K HOH . ? B HOH 3005 ? 1_555 MG ? E MG . ? B MG 3000 ? 1_555 O ? K HOH . ? B HOH 3006 ? 1_555 179.7 ? 46 O ? J HOH . ? A HOH 4002 ? 1_555 MG ? F MG . ? B MG 4000 ? 1_555 O ? J HOH . ? A HOH 4006 ? 1_555 89.7 ? 47 O ? J HOH . ? A HOH 4002 ? 1_555 MG ? F MG . ? B MG 4000 ? 1_555 O ? K HOH . ? B HOH 4001 ? 1_555 179.8 ? 48 O ? J HOH . ? A HOH 4006 ? 1_555 MG ? F MG . ? B MG 4000 ? 1_555 O ? K HOH . ? B HOH 4001 ? 1_555 90.1 ? 49 O ? J HOH . ? A HOH 4002 ? 1_555 MG ? F MG . ? B MG 4000 ? 1_555 O ? K HOH . ? B HOH 4003 ? 1_555 90.1 ? 50 O ? J HOH . ? A HOH 4006 ? 1_555 MG ? F MG . ? B MG 4000 ? 1_555 O ? K HOH . ? B HOH 4003 ? 1_555 89.6 ? 51 O ? K HOH . ? B HOH 4001 ? 1_555 MG ? F MG . ? B MG 4000 ? 1_555 O ? K HOH . ? B HOH 4003 ? 1_555 90.0 ? 52 O ? J HOH . ? A HOH 4002 ? 1_555 MG ? F MG . ? B MG 4000 ? 1_555 O ? K HOH . ? B HOH 4004 ? 1_555 90.2 ? 53 O ? J HOH . ? A HOH 4006 ? 1_555 MG ? F MG . ? B MG 4000 ? 1_555 O ? K HOH . ? B HOH 4004 ? 1_555 90.3 ? 54 O ? K HOH . ? B HOH 4001 ? 1_555 MG ? F MG . ? B MG 4000 ? 1_555 O ? K HOH . ? B HOH 4004 ? 1_555 89.8 ? 55 O ? K HOH . ? B HOH 4003 ? 1_555 MG ? F MG . ? B MG 4000 ? 1_555 O ? K HOH . ? B HOH 4004 ? 1_555 179.8 ? 56 O ? J HOH . ? A HOH 4002 ? 1_555 MG ? F MG . ? B MG 4000 ? 1_555 O ? K HOH . ? B HOH 4005 ? 1_555 90.0 ? 57 O ? J HOH . ? A HOH 4006 ? 1_555 MG ? F MG . ? B MG 4000 ? 1_555 O ? K HOH . ? B HOH 4005 ? 1_555 179.6 ? 58 O ? K HOH . ? B HOH 4001 ? 1_555 MG ? F MG . ? B MG 4000 ? 1_555 O ? K HOH . ? B HOH 4005 ? 1_555 90.2 ? 59 O ? K HOH . ? B HOH 4003 ? 1_555 MG ? F MG . ? B MG 4000 ? 1_555 O ? K HOH . ? B HOH 4005 ? 1_555 90.1 ? 60 O ? K HOH . ? B HOH 4004 ? 1_555 MG ? F MG . ? B MG 4000 ? 1_555 O ? K HOH . ? B HOH 4005 ? 1_555 90.0 ? 61 O ? J HOH . ? A HOH 5001 ? 1_555 MG ? G MG . ? B MG 5000 ? 1_555 O ? J HOH . ? A HOH 5006 ? 1_555 90.1 ? 62 O ? J HOH . ? A HOH 5001 ? 1_555 MG ? G MG . ? B MG 5000 ? 1_555 O ? K HOH . ? B HOH 5002 ? 1_555 179.9 ? 63 O ? J HOH . ? A HOH 5006 ? 1_555 MG ? G MG . ? B MG 5000 ? 1_555 O ? K HOH . ? B HOH 5002 ? 1_555 90.0 ? 64 O ? J HOH . ? A HOH 5001 ? 1_555 MG ? G MG . ? B MG 5000 ? 1_555 O ? K HOH . ? B HOH 5003 ? 1_555 90.0 ? 65 O ? J HOH . ? A HOH 5006 ? 1_555 MG ? G MG . ? B MG 5000 ? 1_555 O ? K HOH . ? B HOH 5003 ? 1_555 89.9 ? 66 O ? K HOH . ? B HOH 5002 ? 1_555 MG ? G MG . ? B MG 5000 ? 1_555 O ? K HOH . ? B HOH 5003 ? 1_555 89.9 ? 67 O ? J HOH . ? A HOH 5001 ? 1_555 MG ? G MG . ? B MG 5000 ? 1_555 O ? K HOH . ? B HOH 5004 ? 1_555 90.0 ? 68 O ? J HOH . ? A HOH 5006 ? 1_555 MG ? G MG . ? B MG 5000 ? 1_555 O ? K HOH . ? B HOH 5004 ? 1_555 90.1 ? 69 O ? K HOH . ? B HOH 5002 ? 1_555 MG ? G MG . ? B MG 5000 ? 1_555 O ? K HOH . ? B HOH 5004 ? 1_555 90.1 ? 70 O ? K HOH . ? B HOH 5003 ? 1_555 MG ? G MG . ? B MG 5000 ? 1_555 O ? K HOH . ? B HOH 5004 ? 1_555 180.0 ? 71 O ? J HOH . ? A HOH 5001 ? 1_555 MG ? G MG . ? B MG 5000 ? 1_555 O ? K HOH . ? B HOH 5005 ? 1_555 90.1 ? 72 O ? J HOH . ? A HOH 5006 ? 1_555 MG ? G MG . ? B MG 5000 ? 1_555 O ? K HOH . ? B HOH 5005 ? 1_555 179.8 ? 73 O ? K HOH . ? B HOH 5002 ? 1_555 MG ? G MG . ? B MG 5000 ? 1_555 O ? K HOH . ? B HOH 5005 ? 1_555 89.8 ? 74 O ? K HOH . ? B HOH 5003 ? 1_555 MG ? G MG . ? B MG 5000 ? 1_555 O ? K HOH . ? B HOH 5005 ? 1_555 90.1 ? 75 O ? K HOH . ? B HOH 5004 ? 1_555 MG ? G MG . ? B MG 5000 ? 1_555 O ? K HOH . ? B HOH 5005 ? 1_555 89.9 ? 76 O ? J HOH . ? A HOH 6002 ? 1_555 MG ? H MG . ? B MG 6000 ? 1_555 O ? J HOH . ? A HOH 6005 ? 1_555 90.0 ? 77 O ? J HOH . ? A HOH 6002 ? 1_555 MG ? H MG . ? B MG 6000 ? 1_555 OP1 ? B U 2 ? B U 25 ? 1_555 93.8 ? 78 O ? J HOH . ? A HOH 6005 ? 1_555 MG ? H MG . ? B MG 6000 ? 1_555 OP1 ? B U 2 ? B U 25 ? 1_555 170.6 ? 79 O ? J HOH . ? A HOH 6002 ? 1_555 MG ? H MG . ? B MG 6000 ? 1_555 O ? K HOH . ? B HOH 6001 ? 1_555 179.9 ? 80 O ? J HOH . ? A HOH 6005 ? 1_555 MG ? H MG . ? B MG 6000 ? 1_555 O ? K HOH . ? B HOH 6001 ? 1_555 90.0 ? 81 OP1 ? B U 2 ? B U 25 ? 1_555 MG ? H MG . ? B MG 6000 ? 1_555 O ? K HOH . ? B HOH 6001 ? 1_555 86.2 ? 82 O ? J HOH . ? A HOH 6002 ? 1_555 MG ? H MG . ? B MG 6000 ? 1_555 O ? K HOH . ? B HOH 6003 ? 1_555 90.2 ? 83 O ? J HOH . ? A HOH 6005 ? 1_555 MG ? H MG . ? B MG 6000 ? 1_555 O ? K HOH . ? B HOH 6003 ? 1_555 90.3 ? 84 OP1 ? B U 2 ? B U 25 ? 1_555 MG ? H MG . ? B MG 6000 ? 1_555 O ? K HOH . ? B HOH 6003 ? 1_555 81.1 ? 85 O ? K HOH . ? B HOH 6001 ? 1_555 MG ? H MG . ? B MG 6000 ? 1_555 O ? K HOH . ? B HOH 6003 ? 1_555 89.9 ? 86 O ? J HOH . ? A HOH 6002 ? 1_555 MG ? H MG . ? B MG 6000 ? 1_555 O ? K HOH . ? B HOH 6004 ? 1_555 89.9 ? 87 O ? J HOH . ? A HOH 6005 ? 1_555 MG ? H MG . ? B MG 6000 ? 1_555 O ? K HOH . ? B HOH 6004 ? 1_555 90.0 ? 88 OP1 ? B U 2 ? B U 25 ? 1_555 MG ? H MG . ? B MG 6000 ? 1_555 O ? K HOH . ? B HOH 6004 ? 1_555 98.6 ? 89 O ? K HOH . ? B HOH 6001 ? 1_555 MG ? H MG . ? B MG 6000 ? 1_555 O ? K HOH . ? B HOH 6004 ? 1_555 90.0 ? 90 O ? K HOH . ? B HOH 6003 ? 1_555 MG ? H MG . ? B MG 6000 ? 1_555 O ? K HOH . ? B HOH 6004 ? 1_555 179.7 ? 91 O ? K HOH . ? B HOH 7001 ? 1_555 MG ? I MG . ? B MG 7000 ? 1_555 O ? K HOH . ? B HOH 7002 ? 1_555 179.8 ? 92 O ? K HOH . ? B HOH 7001 ? 1_555 MG ? I MG . ? B MG 7000 ? 1_555 O ? K HOH . ? B HOH 7003 ? 1_555 89.9 ? 93 O ? K HOH . ? B HOH 7002 ? 1_555 MG ? I MG . ? B MG 7000 ? 1_555 O ? K HOH . ? B HOH 7003 ? 1_555 90.0 ? 94 O ? K HOH . ? B HOH 7001 ? 1_555 MG ? I MG . ? B MG 7000 ? 1_555 O ? K HOH . ? B HOH 7004 ? 1_555 89.9 ? 95 O ? K HOH . ? B HOH 7002 ? 1_555 MG ? I MG . ? B MG 7000 ? 1_555 O ? K HOH . ? B HOH 7004 ? 1_555 90.2 ? 96 O ? K HOH . ? B HOH 7003 ? 1_555 MG ? I MG . ? B MG 7000 ? 1_555 O ? K HOH . ? B HOH 7004 ? 1_555 179.8 ? 97 O ? K HOH . ? B HOH 7001 ? 1_555 MG ? I MG . ? B MG 7000 ? 1_555 O ? K HOH . ? B HOH 7005 ? 1_555 89.8 ? 98 O ? K HOH . ? B HOH 7002 ? 1_555 MG ? I MG . ? B MG 7000 ? 1_555 O ? K HOH . ? B HOH 7005 ? 1_555 90.1 ? 99 O ? K HOH . ? B HOH 7003 ? 1_555 MG ? I MG . ? B MG 7000 ? 1_555 O ? K HOH . ? B HOH 7005 ? 1_555 90.2 ? 100 O ? K HOH . ? B HOH 7004 ? 1_555 MG ? I MG . ? B MG 7000 ? 1_555 O ? K HOH . ? B HOH 7005 ? 1_555 89.7 ? 101 O ? K HOH . ? B HOH 7001 ? 1_555 MG ? I MG . ? B MG 7000 ? 1_555 O ? K HOH . ? B HOH 7006 ? 1_555 90.2 ? 102 O ? K HOH . ? B HOH 7002 ? 1_555 MG ? I MG . ? B MG 7000 ? 1_555 O ? K HOH . ? B HOH 7006 ? 1_555 90.0 ? 103 O ? K HOH . ? B HOH 7003 ? 1_555 MG ? I MG . ? B MG 7000 ? 1_555 O ? K HOH . ? B HOH 7006 ? 1_555 90.0 ? 104 O ? K HOH . ? B HOH 7004 ? 1_555 MG ? I MG . ? B MG 7000 ? 1_555 O ? K HOH . ? B HOH 7006 ? 1_555 90.1 ? 105 O ? K HOH . ? B HOH 7005 ? 1_555 MG ? I MG . ? B MG 7000 ? 1_555 O ? K HOH . ? B HOH 7006 ? 1_555 179.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 1000 ? 6 'BINDING SITE FOR RESIDUE MG A 1000' AC2 Software A MG 2000 ? 6 'BINDING SITE FOR RESIDUE MG A 2000' AC3 Software B MG 3000 ? 6 'BINDING SITE FOR RESIDUE MG B 3000' AC4 Software B MG 4000 ? 6 'BINDING SITE FOR RESIDUE MG B 4000' AC5 Software B MG 5000 ? 6 'BINDING SITE FOR RESIDUE MG B 5000' AC6 Software B MG 6000 ? 6 'BINDING SITE FOR RESIDUE MG B 6000' AC7 Software B MG 7000 ? 6 'BINDING SITE FOR RESIDUE MG B 7000' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH J . ? HOH A 1002 . ? 1_555 ? 2 AC1 6 HOH J . ? HOH A 1004 . ? 1_555 ? 3 AC1 6 HOH J . ? HOH A 1005 . ? 1_555 ? 4 AC1 6 HOH K . ? HOH B 1001 . ? 1_555 ? 5 AC1 6 HOH K . ? HOH B 1003 . ? 1_555 ? 6 AC1 6 HOH K . ? HOH B 1006 . ? 1_555 ? 7 AC2 6 HOH J . ? HOH A 2001 . ? 1_555 ? 8 AC2 6 HOH J . ? HOH A 2002 . ? 1_555 ? 9 AC2 6 HOH J . ? HOH A 2003 . ? 1_555 ? 10 AC2 6 HOH J . ? HOH A 2004 . ? 1_555 ? 11 AC2 6 HOH J . ? HOH A 2005 . ? 1_555 ? 12 AC2 6 HOH K . ? HOH B 2006 . ? 1_555 ? 13 AC3 6 HOH J . ? HOH A 3004 . ? 1_555 ? 14 AC3 6 HOH K . ? HOH B 3001 . ? 1_555 ? 15 AC3 6 HOH K . ? HOH B 3002 . ? 1_555 ? 16 AC3 6 HOH K . ? HOH B 3003 . ? 1_555 ? 17 AC3 6 HOH K . ? HOH B 3005 . ? 1_555 ? 18 AC3 6 HOH K . ? HOH B 3006 . ? 1_555 ? 19 AC4 6 HOH J . ? HOH A 4002 . ? 1_555 ? 20 AC4 6 HOH J . ? HOH A 4006 . ? 1_555 ? 21 AC4 6 HOH K . ? HOH B 4001 . ? 1_555 ? 22 AC4 6 HOH K . ? HOH B 4003 . ? 1_555 ? 23 AC4 6 HOH K . ? HOH B 4004 . ? 1_555 ? 24 AC4 6 HOH K . ? HOH B 4005 . ? 1_555 ? 25 AC5 6 HOH J . ? HOH A 5001 . ? 1_555 ? 26 AC5 6 HOH J . ? HOH A 5006 . ? 1_555 ? 27 AC5 6 HOH K . ? HOH B 5002 . ? 1_555 ? 28 AC5 6 HOH K . ? HOH B 5003 . ? 1_555 ? 29 AC5 6 HOH K . ? HOH B 5004 . ? 1_555 ? 30 AC5 6 HOH K . ? HOH B 5005 . ? 1_555 ? 31 AC6 6 HOH J . ? HOH A 6002 . ? 1_555 ? 32 AC6 6 HOH J . ? HOH A 6005 . ? 1_555 ? 33 AC6 6 U B 2 ? U B 25 . ? 1_555 ? 34 AC6 6 HOH K . ? HOH B 6001 . ? 1_555 ? 35 AC6 6 HOH K . ? HOH B 6003 . ? 1_555 ? 36 AC6 6 HOH K . ? HOH B 6004 . ? 1_555 ? 37 AC7 6 HOH K . ? HOH B 7001 . ? 1_555 ? 38 AC7 6 HOH K . ? HOH B 7002 . ? 1_555 ? 39 AC7 6 HOH K . ? HOH B 7003 . ? 1_555 ? 40 AC7 6 HOH K . ? HOH B 7004 . ? 1_555 ? 41 AC7 6 HOH K . ? HOH B 7005 . ? 1_555 ? 42 AC7 6 HOH K . ? HOH B 7006 . ? 1_555 ? # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5BU 11 A 5BU 11 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 2 B 5BU 11 B 5BU 34 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A U 1 ? A U 1 2 1 Y 1 A U 2 ? A U 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5BU P P N N 1 5BU OP1 O N N 2 5BU OP2 O N N 3 5BU OP3 O N N 4 5BU "O5'" O N N 5 5BU "C5'" C N N 6 5BU "C4'" C N R 7 5BU "O4'" O N N 8 5BU "C3'" C N S 9 5BU "O3'" O N N 10 5BU "C2'" C N R 11 5BU "O2'" O N N 12 5BU "C1'" C N R 13 5BU N1 N N N 14 5BU C2 C N N 15 5BU O2 O N N 16 5BU N3 N N N 17 5BU C4 C N N 18 5BU O4 O N N 19 5BU C5 C N N 20 5BU C6 C N N 21 5BU BR BR N N 22 5BU HOP2 H N N 23 5BU HOP3 H N N 24 5BU "H5'" H N N 25 5BU "H5''" H N N 26 5BU "H4'" H N N 27 5BU "H3'" H N N 28 5BU "HO3'" H N N 29 5BU "H2'" H N N 30 5BU "HO2'" H N N 31 5BU "H1'" H N N 32 5BU H3 H N N 33 5BU H6 H N N 34 A OP3 O N N 35 A P P N N 36 A OP1 O N N 37 A OP2 O N N 38 A "O5'" O N N 39 A "C5'" C N N 40 A "C4'" C N R 41 A "O4'" O N N 42 A "C3'" C N S 43 A "O3'" O N N 44 A "C2'" C N R 45 A "O2'" O N N 46 A "C1'" C N R 47 A N9 N Y N 48 A C8 C Y N 49 A N7 N Y N 50 A C5 C Y N 51 A C6 C Y N 52 A N6 N N N 53 A N1 N Y N 54 A C2 C Y N 55 A N3 N Y N 56 A C4 C Y N 57 A HOP3 H N N 58 A HOP2 H N N 59 A "H5'" H N N 60 A "H5''" H N N 61 A "H4'" H N N 62 A "H3'" H N N 63 A "HO3'" H N N 64 A "H2'" H N N 65 A "HO2'" H N N 66 A "H1'" H N N 67 A H8 H N N 68 A H61 H N N 69 A H62 H N N 70 A H2 H N N 71 C OP3 O N N 72 C P P N N 73 C OP1 O N N 74 C OP2 O N N 75 C "O5'" O N N 76 C "C5'" C N N 77 C "C4'" C N R 78 C "O4'" O N N 79 C "C3'" C N S 80 C "O3'" O N N 81 C "C2'" C N R 82 C "O2'" O N N 83 C "C1'" C N R 84 C N1 N N N 85 C C2 C N N 86 C O2 O N N 87 C N3 N N N 88 C C4 C N N 89 C N4 N N N 90 C C5 C N N 91 C C6 C N N 92 C HOP3 H N N 93 C HOP2 H N N 94 C "H5'" H N N 95 C "H5''" H N N 96 C "H4'" H N N 97 C "H3'" H N N 98 C "HO3'" H N N 99 C "H2'" H N N 100 C "HO2'" H N N 101 C "H1'" H N N 102 C H41 H N N 103 C H42 H N N 104 C H5 H N N 105 C H6 H N N 106 G OP3 O N N 107 G P P N N 108 G OP1 O N N 109 G OP2 O N N 110 G "O5'" O N N 111 G "C5'" C N N 112 G "C4'" C N R 113 G "O4'" O N N 114 G "C3'" C N S 115 G "O3'" O N N 116 G "C2'" C N R 117 G "O2'" O N N 118 G "C1'" C N R 119 G N9 N Y N 120 G C8 C Y N 121 G N7 N Y N 122 G C5 C Y N 123 G C6 C N N 124 G O6 O N N 125 G N1 N N N 126 G C2 C N N 127 G N2 N N N 128 G N3 N N N 129 G C4 C Y N 130 G HOP3 H N N 131 G HOP2 H N N 132 G "H5'" H N N 133 G "H5''" H N N 134 G "H4'" H N N 135 G "H3'" H N N 136 G "HO3'" H N N 137 G "H2'" H N N 138 G "HO2'" H N N 139 G "H1'" H N N 140 G H8 H N N 141 G H1 H N N 142 G H21 H N N 143 G H22 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 MG MG MG N N 148 U OP3 O N N 149 U P P N N 150 U OP1 O N N 151 U OP2 O N N 152 U "O5'" O N N 153 U "C5'" C N N 154 U "C4'" C N R 155 U "O4'" O N N 156 U "C3'" C N S 157 U "O3'" O N N 158 U "C2'" C N R 159 U "O2'" O N N 160 U "C1'" C N R 161 U N1 N N N 162 U C2 C N N 163 U O2 O N N 164 U N3 N N N 165 U C4 C N N 166 U O4 O N N 167 U C5 C N N 168 U C6 C N N 169 U HOP3 H N N 170 U HOP2 H N N 171 U "H5'" H N N 172 U "H5''" H N N 173 U "H4'" H N N 174 U "H3'" H N N 175 U "HO3'" H N N 176 U "H2'" H N N 177 U "HO2'" H N N 178 U "H1'" H N N 179 U H3 H N N 180 U H5 H N N 181 U H6 H N N 182 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5BU P OP1 doub N N 1 5BU P OP2 sing N N 2 5BU P OP3 sing N N 3 5BU P "O5'" sing N N 4 5BU OP2 HOP2 sing N N 5 5BU OP3 HOP3 sing N N 6 5BU "O5'" "C5'" sing N N 7 5BU "C5'" "C4'" sing N N 8 5BU "C5'" "H5'" sing N N 9 5BU "C5'" "H5''" sing N N 10 5BU "C4'" "O4'" sing N N 11 5BU "C4'" "C3'" sing N N 12 5BU "C4'" "H4'" sing N N 13 5BU "O4'" "C1'" sing N N 14 5BU "C3'" "O3'" sing N N 15 5BU "C3'" "C2'" sing N N 16 5BU "C3'" "H3'" sing N N 17 5BU "O3'" "HO3'" sing N N 18 5BU "C2'" "O2'" sing N N 19 5BU "C2'" "C1'" sing N N 20 5BU "C2'" "H2'" sing N N 21 5BU "O2'" "HO2'" sing N N 22 5BU "C1'" N1 sing N N 23 5BU "C1'" "H1'" sing N N 24 5BU N1 C2 sing N N 25 5BU N1 C6 sing N N 26 5BU C2 O2 doub N N 27 5BU C2 N3 sing N N 28 5BU N3 C4 sing N N 29 5BU N3 H3 sing N N 30 5BU C4 O4 doub N N 31 5BU C4 C5 sing N N 32 5BU C5 C6 doub N N 33 5BU C5 BR sing N N 34 5BU C6 H6 sing N N 35 A OP3 P sing N N 36 A OP3 HOP3 sing N N 37 A P OP1 doub N N 38 A P OP2 sing N N 39 A P "O5'" sing N N 40 A OP2 HOP2 sing N N 41 A "O5'" "C5'" sing N N 42 A "C5'" "C4'" sing N N 43 A "C5'" "H5'" sing N N 44 A "C5'" "H5''" sing N N 45 A "C4'" "O4'" sing N N 46 A "C4'" "C3'" sing N N 47 A "C4'" "H4'" sing N N 48 A "O4'" "C1'" sing N N 49 A "C3'" "O3'" sing N N 50 A "C3'" "C2'" sing N N 51 A "C3'" "H3'" sing N N 52 A "O3'" "HO3'" sing N N 53 A "C2'" "O2'" sing N N 54 A "C2'" "C1'" sing N N 55 A "C2'" "H2'" sing N N 56 A "O2'" "HO2'" sing N N 57 A "C1'" N9 sing N N 58 A "C1'" "H1'" sing N N 59 A N9 C8 sing Y N 60 A N9 C4 sing Y N 61 A C8 N7 doub Y N 62 A C8 H8 sing N N 63 A N7 C5 sing Y N 64 A C5 C6 sing Y N 65 A C5 C4 doub Y N 66 A C6 N6 sing N N 67 A C6 N1 doub Y N 68 A N6 H61 sing N N 69 A N6 H62 sing N N 70 A N1 C2 sing Y N 71 A C2 N3 doub Y N 72 A C2 H2 sing N N 73 A N3 C4 sing Y N 74 C OP3 P sing N N 75 C OP3 HOP3 sing N N 76 C P OP1 doub N N 77 C P OP2 sing N N 78 C P "O5'" sing N N 79 C OP2 HOP2 sing N N 80 C "O5'" "C5'" sing N N 81 C "C5'" "C4'" sing N N 82 C "C5'" "H5'" sing N N 83 C "C5'" "H5''" sing N N 84 C "C4'" "O4'" sing N N 85 C "C4'" "C3'" sing N N 86 C "C4'" "H4'" sing N N 87 C "O4'" "C1'" sing N N 88 C "C3'" "O3'" sing N N 89 C "C3'" "C2'" sing N N 90 C "C3'" "H3'" sing N N 91 C "O3'" "HO3'" sing N N 92 C "C2'" "O2'" sing N N 93 C "C2'" "C1'" sing N N 94 C "C2'" "H2'" sing N N 95 C "O2'" "HO2'" sing N N 96 C "C1'" N1 sing N N 97 C "C1'" "H1'" sing N N 98 C N1 C2 sing N N 99 C N1 C6 sing N N 100 C C2 O2 doub N N 101 C C2 N3 sing N N 102 C N3 C4 doub N N 103 C C4 N4 sing N N 104 C C4 C5 sing N N 105 C N4 H41 sing N N 106 C N4 H42 sing N N 107 C C5 C6 doub N N 108 C C5 H5 sing N N 109 C C6 H6 sing N N 110 G OP3 P sing N N 111 G OP3 HOP3 sing N N 112 G P OP1 doub N N 113 G P OP2 sing N N 114 G P "O5'" sing N N 115 G OP2 HOP2 sing N N 116 G "O5'" "C5'" sing N N 117 G "C5'" "C4'" sing N N 118 G "C5'" "H5'" sing N N 119 G "C5'" "H5''" sing N N 120 G "C4'" "O4'" sing N N 121 G "C4'" "C3'" sing N N 122 G "C4'" "H4'" sing N N 123 G "O4'" "C1'" sing N N 124 G "C3'" "O3'" sing N N 125 G "C3'" "C2'" sing N N 126 G "C3'" "H3'" sing N N 127 G "O3'" "HO3'" sing N N 128 G "C2'" "O2'" sing N N 129 G "C2'" "C1'" sing N N 130 G "C2'" "H2'" sing N N 131 G "O2'" "HO2'" sing N N 132 G "C1'" N9 sing N N 133 G "C1'" "H1'" sing N N 134 G N9 C8 sing Y N 135 G N9 C4 sing Y N 136 G C8 N7 doub Y N 137 G C8 H8 sing N N 138 G N7 C5 sing Y N 139 G C5 C6 sing N N 140 G C5 C4 doub Y N 141 G C6 O6 doub N N 142 G C6 N1 sing N N 143 G N1 C2 sing N N 144 G N1 H1 sing N N 145 G C2 N2 sing N N 146 G C2 N3 doub N N 147 G N2 H21 sing N N 148 G N2 H22 sing N N 149 G N3 C4 sing N N 150 HOH O H1 sing N N 151 HOH O H2 sing N N 152 U OP3 P sing N N 153 U OP3 HOP3 sing N N 154 U P OP1 doub N N 155 U P OP2 sing N N 156 U P "O5'" sing N N 157 U OP2 HOP2 sing N N 158 U "O5'" "C5'" sing N N 159 U "C5'" "C4'" sing N N 160 U "C5'" "H5'" sing N N 161 U "C5'" "H5''" sing N N 162 U "C4'" "O4'" sing N N 163 U "C4'" "C3'" sing N N 164 U "C4'" "H4'" sing N N 165 U "O4'" "C1'" sing N N 166 U "C3'" "O3'" sing N N 167 U "C3'" "C2'" sing N N 168 U "C3'" "H3'" sing N N 169 U "O3'" "HO3'" sing N N 170 U "C2'" "O2'" sing N N 171 U "C2'" "C1'" sing N N 172 U "C2'" "H2'" sing N N 173 U "O2'" "HO2'" sing N N 174 U "C1'" N1 sing N N 175 U "C1'" "H1'" sing N N 176 U N1 C2 sing N N 177 U N1 C6 sing N N 178 U C2 O2 doub N N 179 U C2 N3 sing N N 180 U N3 C4 sing N N 181 U N3 H3 sing N N 182 U C4 O4 doub N N 183 U C4 C5 sing N N 184 U C5 C6 doub N N 185 U C5 H5 sing N N 186 U C6 H6 sing N N 187 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3TD0 'double helix' 3TD0 'a-form double helix' 3TD0 'bulge loop' 3TD0 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 3 1_555 B C 23 1_555 -0.187 -0.158 0.161 6.949 -2.680 -2.460 1 A_G3:C46_B A 3 ? B 46 ? 19 1 1 A C 4 1_555 B G 22 1_555 0.427 0.080 0.020 8.245 -3.494 4.292 2 A_C4:G45_B A 4 ? B 45 ? 19 1 1 A G 5 1_555 B C 21 1_555 -0.108 -0.087 -0.179 -2.003 -11.669 3.649 3 A_G5:C44_B A 5 ? B 44 ? 19 1 1 A U 6 1_555 B U 20 1_555 -0.505 -1.657 0.094 3.206 -7.806 -8.157 4 A_U6:U43_B A 6 ? B 43 ? ? ? 1 A C 7 1_555 B G 19 1_555 0.177 -0.138 -0.175 7.939 -11.619 1.835 5 A_C7:G42_B A 7 ? B 42 ? 19 1 1 A G 8 1_555 B A 17 1_555 -0.141 1.494 -0.159 -16.552 -15.173 -16.909 6 A_G8:A40_B A 8 ? B 40 ? 8 1 1 A C 9 1_555 B G 16 1_555 0.223 -0.194 0.265 -0.931 -10.373 -1.867 7 A_C9:G39_B A 9 ? B 39 ? 19 1 1 A G 10 1_555 B C 15 1_555 -0.053 -0.133 0.404 2.743 -23.808 0.590 8 A_G10:C38_B A 10 ? B 38 ? 19 1 1 A 5BU 11 1_555 B A 14 1_555 -0.210 -0.140 0.041 1.925 -24.631 -1.791 9 A_5BU11:A37_B A 11 ? B 37 ? 20 1 1 A C 12 1_555 B G 13 1_555 0.259 -0.137 0.090 -2.018 -14.204 0.138 10 A_C12:G36_B A 12 ? B 36 ? 19 1 1 A G 13 1_555 B C 12 1_555 -0.198 -0.143 0.152 -0.469 -15.341 1.543 11 A_G13:C35_B A 13 ? B 35 ? 19 1 1 A A 14 1_555 B 5BU 11 1_555 0.061 -0.179 0.020 0.531 -19.484 -2.289 12 A_A14:5BU34_B A 14 ? B 34 ? 20 1 1 A C 15 1_555 B G 10 1_555 0.267 -0.176 0.202 0.215 -19.722 2.055 13 A_C15:G33_B A 15 ? B 33 ? 19 1 1 A G 16 1_555 B C 9 1_555 -0.297 -0.082 0.019 -4.111 -17.753 1.816 14 A_G16:C32_B A 16 ? B 32 ? 19 1 1 A A 17 1_555 B G 8 1_555 0.110 1.453 -0.374 10.000 -17.745 -15.027 15 A_A17:G31_B A 17 ? B 31 ? 8 1 1 A G 19 1_555 B C 7 1_555 -0.060 -0.131 0.005 -6.842 -5.427 -0.163 16 A_G19:C30_B A 19 ? B 30 ? 19 1 1 A U 20 1_555 B U 6 1_555 -2.466 -1.660 0.050 2.856 -15.158 2.619 17 A_U20:U29_B A 20 ? B 29 ? 16 1 1 A C 21 1_555 B G 5 1_555 0.266 -0.121 -0.150 2.741 -15.881 4.465 18 A_C21:G28_B A 21 ? B 28 ? 19 1 1 A G 22 1_555 B C 4 1_555 -0.201 -0.186 0.055 -6.894 -10.318 1.297 19 A_G22:C27_B A 22 ? B 27 ? 19 1 1 A C 23 1_555 B G 3 1_555 0.170 -0.164 0.108 -2.281 -4.969 -0.066 20 A_C23:G26_B A 23 ? B 26 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 3 1_555 B C 23 1_555 A C 4 1_555 B G 22 1_555 0.297 -2.201 3.310 -1.677 3.377 33.804 -4.290 -0.770 3.065 5.785 2.873 34.008 1 AA_G3C4:G45C46_BB A 3 ? B 46 ? A 4 ? B 45 ? 1 A C 4 1_555 B G 22 1_555 A G 5 1_555 B C 21 1_555 -0.286 -2.129 3.458 0.723 7.529 25.008 -6.689 0.823 2.702 16.899 -1.624 26.109 2 AA_C4G5:C44G45_BB A 4 ? B 45 ? A 5 ? B 44 ? 1 A G 5 1_555 B C 21 1_555 A U 6 1_555 B U 20 1_555 -1.045 -1.771 3.036 -6.886 3.637 32.612 -3.630 0.755 2.979 6.364 12.050 33.505 3 AA_G5U6:U43C44_BB A 5 ? B 44 ? A 6 ? B 43 ? 1 A U 6 1_555 B U 20 1_555 A C 7 1_555 B G 19 1_555 0.910 -1.933 3.149 3.545 1.905 37.104 -3.263 -0.971 3.120 2.982 -5.550 37.314 4 AA_U6C7:G42U43_BB A 6 ? B 43 ? A 7 ? B 42 ? 1 A C 7 1_555 B G 19 1_555 A G 8 1_555 B A 17 1_555 0.680 -2.222 3.453 5.632 15.434 43.992 -4.032 -0.404 2.637 19.801 -7.226 46.816 5 AA_C7G8:A40G42_BB A 7 ? B 42 ? A 8 ? B 40 ? 1 A G 8 1_555 B A 17 1_555 A C 9 1_555 B G 16 1_555 0.894 -0.662 3.056 -4.544 3.603 30.592 -1.857 -2.451 2.803 6.753 8.516 31.124 6 AA_G8C9:G39A40_BB A 8 ? B 40 ? A 9 ? B 39 ? 1 A C 9 1_555 B G 16 1_555 A G 10 1_555 B C 15 1_555 0.667 -1.911 2.893 -1.891 13.928 30.788 -5.001 -1.380 1.838 24.684 3.351 33.774 7 AA_C9G10:C38G39_BB A 9 ? B 39 ? A 10 ? B 38 ? 1 A G 10 1_555 B C 15 1_555 A 5BU 11 1_555 B A 14 1_555 -0.999 -1.798 3.063 -2.165 2.464 33.876 -3.436 1.387 2.985 4.217 3.704 34.030 8 AA_G105BU11:A37C38_BB A 10 ? B 38 ? A 11 ? B 37 ? 1 A 5BU 11 1_555 B A 14 1_555 A C 12 1_555 B G 13 1_555 -0.113 -1.331 3.324 -1.577 10.642 34.195 -3.634 -0.033 2.800 17.567 2.603 35.799 9 AA_5BU11C12:G36A37_BB A 11 ? B 37 ? A 12 ? B 36 ? 1 A C 12 1_555 B G 13 1_555 A G 13 1_555 B C 12 1_555 0.060 -1.736 3.074 -0.522 16.489 26.957 -5.646 -0.187 1.745 31.863 1.008 31.524 10 AA_C12G13:C35G36_BB A 12 ? B 36 ? A 13 ? B 35 ? 1 A G 13 1_555 B C 12 1_555 A A 14 1_555 B 5BU 11 1_555 -0.443 -1.036 3.188 0.454 8.343 34.360 -2.864 0.794 2.860 13.869 -0.755 35.332 11 AA_G13A14:5BU34C35_BB A 13 ? B 35 ? A 14 ? B 34 ? 1 A A 14 1_555 B 5BU 11 1_555 A C 15 1_555 B G 10 1_555 0.981 -1.440 3.173 1.953 6.429 33.168 -3.449 -1.391 2.902 11.120 -3.379 33.823 12 AA_A14C15:G335BU34_BB A 14 ? B 34 ? A 15 ? B 33 ? 1 A C 15 1_555 B G 10 1_555 A G 16 1_555 B C 9 1_555 -0.296 -1.663 3.132 2.830 17.453 30.291 -4.946 0.846 1.890 30.369 -4.925 34.969 13 AA_C15G16:C32G33_BB A 15 ? B 33 ? A 16 ? B 32 ? 1 A G 16 1_555 B C 9 1_555 A A 17 1_555 B G 8 1_555 -0.949 -0.752 3.053 5.223 3.445 32.082 -1.874 2.501 2.775 6.159 -9.340 32.671 14 AA_G16A17:G31C32_BB A 16 ? B 32 ? A 17 ? B 31 ? 1 A A 17 1_555 B G 8 1_555 A G 19 1_555 B C 7 1_555 -0.877 -2.140 3.414 -5.008 13.931 43.329 -3.932 0.708 2.718 18.243 6.558 45.673 15 AA_A17G19:C30G31_BB A 17 ? B 31 ? A 19 ? B 30 ? 1 A G 19 1_555 B C 7 1_555 A U 20 1_555 B U 6 1_555 0.116 -1.785 2.830 -2.995 6.367 23.851 -5.670 -0.986 2.253 14.993 7.053 24.853 16 AA_G19U20:U29C30_BB A 19 ? B 30 ? A 20 ? B 29 ? 1 A U 20 1_555 B U 6 1_555 A C 21 1_555 B G 5 1_555 0.101 -1.354 3.307 0.427 4.885 45.802 -2.147 -0.092 3.155 6.255 -0.547 46.049 17 AA_U20C21:G28U29_BB A 20 ? B 29 ? A 21 ? B 28 ? 1 A C 21 1_555 B G 5 1_555 A G 22 1_555 B C 4 1_555 -0.141 -1.826 3.417 0.104 11.467 27.407 -5.830 0.296 2.469 22.969 -0.209 29.667 18 AA_C21G22:C27G28_BB A 21 ? B 28 ? A 22 ? B 27 ? 1 A G 22 1_555 B C 4 1_555 A C 23 1_555 B G 3 1_555 0.011 -1.548 3.296 0.124 1.821 33.728 -2.958 0.000 3.210 3.136 -0.214 33.776 19 AA_G22C23:G26C27_BB A 22 ? B 27 ? A 23 ? B 26 ? # _atom_sites.entry_id 3TD0 _atom_sites.fract_transf_matrix[1][1] 0.021968 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021400 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018086 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C MG N O P # loop_