HEADER TRANSFERASE 11-AUG-11 3TDV TITLE STRUCTURE OF THE GDP COMPLEX OF WILD-TYPE AMINOGLYCOSIDE 2'- TITLE 2 PHOSPHOTRANSFERASE-IIIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENTAMICIN RESISTANCE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS GALLINARUM; SOURCE 3 ORGANISM_TAXID: 1353; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, PHOSPHORYL TRANSFER, ANTIBIOTIC RESISTANCE, GENTAMICIN, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.A.SMITH,S.B.VAKULENKO REVDAT 5 28-FEB-24 3TDV 1 REMARK LINK REVDAT 4 26-FEB-20 3TDV 1 REMARK REVDAT 3 02-MAY-12 3TDV 1 JRNL REVDAT 2 14-MAR-12 3TDV 1 JRNL REVDAT 1 07-MAR-12 3TDV 0 JRNL AUTH C.A.SMITH,M.TOTH,H.FRASE,L.J.BYRNES,S.B.VAKULENKO JRNL TITL AMINOGLYCOSIDE-2' PHOSPHOTRANSFERASE-IIIA (APH(2')-IIIA) JRNL TITL 2 PREFERS GTP OVER ATP: STRUCTURAL TEMPLATES FOR NUCLEOTIDE JRNL TITL 3 RECOGNITION IN THE BACTERIAL AMINOGLYCOSIDE-2' KINASES. JRNL REF J.BIOL.CHEM. V. 287 12893 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22367198 JRNL DOI 10.1074/JBC.M112.341206 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 30488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1567 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4577 - 4.8897 0.95 2621 162 0.1859 0.2503 REMARK 3 2 4.8897 - 3.8823 0.96 2641 131 0.1580 0.2300 REMARK 3 3 3.8823 - 3.3919 0.95 2652 116 0.1886 0.2802 REMARK 3 4 3.3919 - 3.0819 0.96 2660 150 0.2004 0.2819 REMARK 3 5 3.0819 - 2.8611 0.95 2665 131 0.2116 0.2943 REMARK 3 6 2.8611 - 2.6924 0.96 2640 142 0.2234 0.3291 REMARK 3 7 2.6924 - 2.5576 0.96 2624 154 0.2465 0.3922 REMARK 3 8 2.5576 - 2.4463 0.95 2583 156 0.2380 0.3626 REMARK 3 9 2.4463 - 2.3522 0.95 2673 146 0.2330 0.3148 REMARK 3 10 2.3522 - 2.2710 0.94 2563 159 0.2460 0.3259 REMARK 3 11 2.2710 - 2.2000 0.94 2601 120 0.2655 0.3272 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 33.62 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.690 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.72640 REMARK 3 B22 (A**2) : -4.48720 REMARK 3 B33 (A**2) : -6.23930 REMARK 3 B12 (A**2) : 8.75800 REMARK 3 B13 (A**2) : 6.01540 REMARK 3 B23 (A**2) : 4.39360 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5036 REMARK 3 ANGLE : 1.182 6816 REMARK 3 CHIRALITY : 0.072 757 REMARK 3 PLANARITY : 0.005 884 REMARK 3 DIHEDRAL : 19.139 1859 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TDV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : SI(222) LIQUID NITROGEN COOLED REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-325 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30490 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 38.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM NITRATE, 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ASN A 304 REMARK 465 SER A 305 REMARK 465 ALA A 306 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 GLY B 302 REMARK 465 ALA B 303 REMARK 465 ASN B 304 REMARK 465 SER B 305 REMARK 465 ALA B 306 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 111 O HOH B 570 1.96 REMARK 500 OD1 ASP A 284 OG SER A 287 2.06 REMARK 500 O HOH A 606 O HOH A 620 2.07 REMARK 500 OE1 GLN A 76 O HOH A 524 2.11 REMARK 500 O LEU B 27 O HOH B 548 2.12 REMARK 500 OE1 GLN A 96 O HOH A 525 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 166 NH2 ARG B 209 1545 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 -18.61 -49.48 REMARK 500 VAL A 107 35.32 -92.14 REMARK 500 ASP A 218 77.35 54.12 REMARK 500 SER A 225 -158.02 -158.57 REMARK 500 TRP A 285 34.65 -79.53 REMARK 500 ILE A 286 -51.29 -145.08 REMARK 500 PHE A 301 83.22 -19.83 REMARK 500 ASN B 4 95.97 72.32 REMARK 500 ASP B 103 -85.19 -39.14 REMARK 500 PRO B 109 132.57 -32.29 REMARK 500 ASP B 196 32.46 -142.04 REMARK 500 LEU B 197 74.05 -64.83 REMARK 500 THR B 211 52.30 -140.01 REMARK 500 ASP B 218 79.53 48.65 REMARK 500 SER B 225 -158.66 -170.94 REMARK 500 ASP B 254 59.83 -111.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 51 OE1 REMARK 620 2 GLU A 55 OE2 114.4 REMARK 620 3 HOH A 531 O 77.8 165.1 REMARK 620 4 HOH A 532 O 158.9 83.6 82.9 REMARK 620 5 HOH A 533 O 99.2 90.7 95.9 91.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 218 OD2 REMARK 620 2 GDP A 500 O2A 93.0 REMARK 620 3 GDP A 500 O2B 103.3 92.5 REMARK 620 4 HOH A 511 O 87.5 176.4 90.8 REMARK 620 5 HOH A 512 O 168.0 97.6 82.1 81.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 218 OD1 REMARK 620 2 ASP A 218 OD2 55.0 REMARK 620 3 GDP A 500 O3B 99.0 71.6 REMARK 620 4 HOH A 521 O 101.6 151.4 99.9 REMARK 620 5 HOH A 522 O 80.4 72.8 136.2 123.4 REMARK 620 6 HOH A 523 O 152.3 101.1 83.9 105.1 78.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 51 OE1 REMARK 620 2 GLU B 55 OE2 98.8 REMARK 620 3 HOH B 531 O 75.5 171.0 REMARK 620 4 HOH B 532 O 162.8 89.3 94.4 REMARK 620 5 HOH B 533 O 86.5 91.1 81.7 78.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 218 OD2 REMARK 620 2 GDP B 500 O2A 88.8 REMARK 620 3 GDP B 500 O2B 79.6 85.5 REMARK 620 4 HOH B 511 O 90.1 166.8 81.4 REMARK 620 5 HOH B 512 O 171.4 84.7 94.2 94.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 218 OD1 REMARK 620 2 ASP B 218 OD2 60.9 REMARK 620 3 GDP B 500 O3B 106.8 92.0 REMARK 620 4 HOH B 521 O 80.6 89.3 172.0 REMARK 620 5 HOH B 522 O 91.4 152.3 94.1 88.5 REMARK 620 6 HOH B 523 O 143.4 92.4 98.1 74.0 113.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TDW RELATED DB: PDB DBREF 3TDV A 1 306 UNP P96762 P96762_ENTGA 1 306 DBREF 3TDV B 1 306 UNP P96762 P96762_ENTGA 1 306 SEQRES 1 A 306 MET LYS GLN ASN LYS LEU HIS TYR THR THR MET ILE MET SEQRES 2 A 306 THR GLN PHE PRO ASP ILE SER ILE GLN SER VAL GLU SER SEQRES 3 A 306 LEU GLY GLU GLY PHE ARG ASN TYR ALA ILE LEU VAL ASN SEQRES 4 A 306 GLY ASP TRP VAL PHE ARG PHE PRO LYS SER GLN GLN GLY SEQRES 5 A 306 ALA ASP GLU LEU ASN LYS GLU ILE GLN LEU LEU PRO LEU SEQRES 6 A 306 LEU VAL GLY CYS VAL LYS VAL ASN ILE PRO GLN TYR VAL SEQRES 7 A 306 TYR ILE GLY LYS ARG SER ASP GLY ASN PRO PHE VAL GLY SEQRES 8 A 306 TYR ARG LYS VAL GLN GLY GLN ILE LEU GLY GLU ASP GLY SEQRES 9 A 306 MET ALA VAL PHE PRO ASP ASP ALA LYS ASP ARG LEU ALA SEQRES 10 A 306 LEU GLN LEU ALA GLU PHE MET ASN GLU LEU SER ALA PHE SEQRES 11 A 306 PRO VAL GLU THR ALA ILE SER ALA GLY VAL PRO VAL THR SEQRES 12 A 306 ASN LEU LYS ASN LYS ILE LEU LEU LEU SER GLU ALA VAL SEQRES 13 A 306 GLU ASP GLN VAL PHE PRO LEU LEU ASP GLU SER LEU ARG SEQRES 14 A 306 ASP TYR LEU THR LEU ARG PHE GLN SER TYR MET THR HIS SEQRES 15 A 306 PRO VAL TYR THR ARG TYR THR PRO ARG LEU ILE HIS GLY SEQRES 16 A 306 ASP LEU SER PRO ASP HIS PHE LEU THR ASN LEU ASN SER SEQRES 17 A 306 ARG GLN THR PRO LEU THR GLY ILE ILE ASP PHE GLY ASP SEQRES 18 A 306 ALA ALA ILE SER ASP PRO ASP TYR ASP TYR VAL TYR LEU SEQRES 19 A 306 LEU GLU ASP CYS GLY GLU LEU PHE THR ARG GLN VAL MET SEQRES 20 A 306 ALA TYR ARG GLY GLU VAL ASP LEU ASP THR HIS ILE ARG SEQRES 21 A 306 LYS VAL SER LEU PHE VAL THR PHE ASP GLN VAL SER TYR SEQRES 22 A 306 LEU LEU GLU GLY LEU ARG ALA ARG ASP GLN ASP TRP ILE SEQRES 23 A 306 SER GLU GLY LEU GLU LEU LEU GLU GLU ASP LYS ALA ASN SEQRES 24 A 306 ASN PHE GLY ALA ASN SER ALA SEQRES 1 B 306 MET LYS GLN ASN LYS LEU HIS TYR THR THR MET ILE MET SEQRES 2 B 306 THR GLN PHE PRO ASP ILE SER ILE GLN SER VAL GLU SER SEQRES 3 B 306 LEU GLY GLU GLY PHE ARG ASN TYR ALA ILE LEU VAL ASN SEQRES 4 B 306 GLY ASP TRP VAL PHE ARG PHE PRO LYS SER GLN GLN GLY SEQRES 5 B 306 ALA ASP GLU LEU ASN LYS GLU ILE GLN LEU LEU PRO LEU SEQRES 6 B 306 LEU VAL GLY CYS VAL LYS VAL ASN ILE PRO GLN TYR VAL SEQRES 7 B 306 TYR ILE GLY LYS ARG SER ASP GLY ASN PRO PHE VAL GLY SEQRES 8 B 306 TYR ARG LYS VAL GLN GLY GLN ILE LEU GLY GLU ASP GLY SEQRES 9 B 306 MET ALA VAL PHE PRO ASP ASP ALA LYS ASP ARG LEU ALA SEQRES 10 B 306 LEU GLN LEU ALA GLU PHE MET ASN GLU LEU SER ALA PHE SEQRES 11 B 306 PRO VAL GLU THR ALA ILE SER ALA GLY VAL PRO VAL THR SEQRES 12 B 306 ASN LEU LYS ASN LYS ILE LEU LEU LEU SER GLU ALA VAL SEQRES 13 B 306 GLU ASP GLN VAL PHE PRO LEU LEU ASP GLU SER LEU ARG SEQRES 14 B 306 ASP TYR LEU THR LEU ARG PHE GLN SER TYR MET THR HIS SEQRES 15 B 306 PRO VAL TYR THR ARG TYR THR PRO ARG LEU ILE HIS GLY SEQRES 16 B 306 ASP LEU SER PRO ASP HIS PHE LEU THR ASN LEU ASN SER SEQRES 17 B 306 ARG GLN THR PRO LEU THR GLY ILE ILE ASP PHE GLY ASP SEQRES 18 B 306 ALA ALA ILE SER ASP PRO ASP TYR ASP TYR VAL TYR LEU SEQRES 19 B 306 LEU GLU ASP CYS GLY GLU LEU PHE THR ARG GLN VAL MET SEQRES 20 B 306 ALA TYR ARG GLY GLU VAL ASP LEU ASP THR HIS ILE ARG SEQRES 21 B 306 LYS VAL SER LEU PHE VAL THR PHE ASP GLN VAL SER TYR SEQRES 22 B 306 LEU LEU GLU GLY LEU ARG ALA ARG ASP GLN ASP TRP ILE SEQRES 23 B 306 SER GLU GLY LEU GLU LEU LEU GLU GLU ASP LYS ALA ASN SEQRES 24 B 306 ASN PHE GLY ALA ASN SER ALA HET GDP A 500 28 HET MG A 501 1 HET MG A 502 1 HET MG A 503 1 HET GDP B 500 28 HET MG B 501 1 HET MG B 502 1 HET MG B 503 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 6(MG 2+) FORMUL 11 HOH *291(H2 O) HELIX 1 1 ASN A 4 PHE A 16 1 13 HELIX 2 2 SER A 49 VAL A 67 1 19 HELIX 3 3 GLY A 68 VAL A 70 5 3 HELIX 4 4 GLU A 102 VAL A 107 1 6 HELIX 5 5 PRO A 109 PHE A 130 1 22 HELIX 6 6 PRO A 131 SER A 137 1 7 HELIX 7 7 ASN A 144 VAL A 160 1 17 HELIX 8 8 PHE A 161 LEU A 164 5 4 HELIX 9 9 ASP A 165 HIS A 182 1 18 HELIX 10 10 HIS A 182 ARG A 187 1 6 HELIX 11 11 SER A 198 ASP A 200 5 3 HELIX 12 12 ASP A 226 ASP A 230 5 5 HELIX 13 13 TYR A 231 GLY A 239 1 9 HELIX 14 14 GLY A 239 ARG A 250 1 12 HELIX 15 15 ASP A 254 ALA A 280 1 27 HELIX 16 16 GLU A 288 ASN A 300 1 13 HELIX 17 17 LEU B 6 PHE B 16 1 11 HELIX 18 18 SER B 49 VAL B 67 1 19 HELIX 19 19 GLY B 68 VAL B 70 5 3 HELIX 20 20 LEU B 100 VAL B 107 1 8 HELIX 21 21 PRO B 109 PHE B 130 1 22 HELIX 22 22 PRO B 131 ALA B 138 1 8 HELIX 23 23 ASN B 144 VAL B 160 1 17 HELIX 24 24 PHE B 161 LEU B 164 5 4 HELIX 25 25 ASP B 165 HIS B 182 1 18 HELIX 26 26 HIS B 182 ARG B 187 1 6 HELIX 27 27 SER B 198 ASP B 200 5 3 HELIX 28 28 ASP B 226 ASP B 230 5 5 HELIX 29 29 TYR B 231 GLY B 239 1 9 HELIX 30 30 GLY B 239 ARG B 250 1 12 HELIX 31 31 ASP B 254 ALA B 280 1 27 HELIX 32 32 ASP B 282 ASN B 300 1 19 SHEET 1 A 5 VAL A 24 GLU A 29 0 SHEET 2 A 5 ASN A 33 VAL A 38 -1 O ALA A 35 N LEU A 27 SHEET 3 A 5 TRP A 42 PRO A 47 -1 O PHE A 46 N TYR A 34 SHEET 4 A 5 PRO A 88 ARG A 93 -1 O TYR A 92 N VAL A 43 SHEET 5 A 5 TYR A 77 LYS A 82 -1 N TYR A 79 O GLY A 91 SHEET 1 B 3 GLN A 98 ILE A 99 0 SHEET 2 B 3 PHE A 202 THR A 204 -1 O THR A 204 N GLN A 98 SHEET 3 B 3 LEU A 213 ILE A 216 -1 O THR A 214 N LEU A 203 SHEET 1 C 2 ARG A 191 ILE A 193 0 SHEET 2 C 2 ALA A 223 SER A 225 -1 O ALA A 223 N ILE A 193 SHEET 1 D 5 VAL B 24 GLU B 29 0 SHEET 2 D 5 ASN B 33 VAL B 38 -1 O LEU B 37 N GLU B 25 SHEET 3 D 5 TRP B 42 PRO B 47 -1 O PHE B 46 N TYR B 34 SHEET 4 D 5 PRO B 88 ARG B 93 -1 O VAL B 90 N ARG B 45 SHEET 5 D 5 TYR B 77 LYS B 82 -1 N GLY B 81 O PHE B 89 SHEET 1 E 3 GLN B 98 ILE B 99 0 SHEET 2 E 3 PHE B 202 THR B 204 -1 O THR B 204 N GLN B 98 SHEET 3 E 3 LEU B 213 ILE B 216 -1 O GLY B 215 N LEU B 203 SHEET 1 F 2 ARG B 191 ILE B 193 0 SHEET 2 F 2 ALA B 223 SER B 225 -1 O ALA B 223 N ILE B 193 LINK OE1 GLN A 51 MG MG A 503 1555 1555 2.05 LINK OE2 GLU A 55 MG MG A 503 1555 1555 2.04 LINK OD2 ASP A 218 MG MG A 501 1555 1555 2.09 LINK OD1 ASP A 218 MG MG A 502 1555 1555 2.20 LINK OD2 ASP A 218 MG MG A 502 1555 1555 2.53 LINK O2A GDP A 500 MG MG A 501 1555 1555 2.09 LINK O2B GDP A 500 MG MG A 501 1555 1555 2.20 LINK O3B GDP A 500 MG MG A 502 1555 1555 2.00 LINK MG MG A 501 O HOH A 511 1555 1555 2.11 LINK MG MG A 501 O HOH A 512 1555 1555 2.10 LINK MG MG A 502 O HOH A 521 1555 1555 2.00 LINK MG MG A 502 O HOH A 522 1555 1555 2.11 LINK MG MG A 502 O HOH A 523 1555 1555 2.11 LINK MG MG A 503 O HOH A 531 1555 1555 1.96 LINK MG MG A 503 O HOH A 532 1555 1555 2.06 LINK MG MG A 503 O HOH A 533 1555 1555 2.10 LINK OE1 GLN B 51 MG MG B 503 1555 1555 2.19 LINK OE2 GLU B 55 MG MG B 503 1555 1555 1.99 LINK OD2 ASP B 218 MG MG B 501 1555 1555 2.10 LINK OD1 ASP B 218 MG MG B 502 1555 1555 2.10 LINK OD2 ASP B 218 MG MG B 502 1555 1555 2.26 LINK O2A GDP B 500 MG MG B 501 1555 1555 2.09 LINK O2B GDP B 500 MG MG B 501 1555 1555 2.11 LINK O3B GDP B 500 MG MG B 502 1555 1555 2.10 LINK MG MG B 501 O HOH B 511 1555 1555 2.12 LINK MG MG B 501 O HOH B 512 1555 1555 2.10 LINK MG MG B 502 O HOH B 521 1555 1555 2.10 LINK MG MG B 502 O HOH B 522 1555 1555 2.11 LINK MG MG B 502 O HOH B 523 1555 1555 2.10 LINK MG MG B 503 O HOH B 531 1555 1555 2.21 LINK MG MG B 503 O HOH B 532 1555 1555 2.29 LINK MG MG B 503 O HOH B 533 1555 1555 2.20 SITE 1 AC1 24 LEU A 27 GLY A 28 GLU A 29 GLY A 30 SITE 2 AC1 24 PHE A 31 ARG A 32 ASN A 33 ARG A 45 SITE 3 AC1 24 TYR A 92 LYS A 94 VAL A 95 HIS A 201 SITE 4 AC1 24 ASP A 218 MG A 501 MG A 502 HOH A 511 SITE 5 AC1 24 HOH A 512 HOH A 513 HOH A 521 HOH A 523 SITE 6 AC1 24 HOH A 529 HOH A 552 HOH A 557 HOH A 602 SITE 1 AC2 5 HIS A 201 ASP A 218 GDP A 500 HOH A 511 SITE 2 AC2 5 HOH A 512 SITE 1 AC3 5 ASP A 218 GDP A 500 HOH A 521 HOH A 522 SITE 2 AC3 5 HOH A 523 SITE 1 AC4 7 ARG A 32 GLN A 51 GLU A 55 HOH A 531 SITE 2 AC4 7 HOH A 532 HOH A 533 ASP B 18 SITE 1 AC5 26 LEU B 27 GLY B 28 GLU B 29 GLY B 30 SITE 2 AC5 26 PHE B 31 ARG B 32 ASN B 33 ALA B 35 SITE 3 AC5 26 ARG B 45 TYR B 92 LYS B 94 VAL B 95 SITE 4 AC5 26 HIS B 201 ILE B 217 ASP B 218 MG B 501 SITE 5 AC5 26 MG B 502 HOH B 511 HOH B 512 HOH B 513 SITE 6 AC5 26 HOH B 520 HOH B 522 HOH B 523 HOH B 528 SITE 7 AC5 26 HOH B 548 HOH B 597 SITE 1 AC6 5 HIS B 201 ASP B 218 GDP B 500 HOH B 511 SITE 2 AC6 5 HOH B 512 SITE 1 AC7 5 ASP B 218 GDP B 500 HOH B 521 HOH B 522 SITE 2 AC7 5 HOH B 523 SITE 1 AC8 6 ASP A 18 GLN B 51 GLU B 55 HOH B 531 SITE 2 AC8 6 HOH B 532 HOH B 533 CRYST1 41.680 54.650 77.160 89.94 103.83 106.84 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023992 0.007264 0.006459 0.00000 SCALE2 0.000000 0.019118 0.001407 0.00000 SCALE3 0.000000 0.000000 0.013383 0.00000