HEADER LYASE 16-AUG-11 3TFX TITLE CRYSTAL STRUCTURE OF OROTIDINE 5'-PHOSPHATE DECARBOXYLASE FROM TITLE 2 LACTOBACILLUS ACIDOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: OROTIDINE 5'-PHOSPHATE DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OMP DECARBOXYLASE, OMPDCASE, OMPDECASE; COMPND 5 EC: 4.1.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS ACIDOPHILUS; SOURCE 3 ORGANISM_TAXID: 1579; SOURCE 4 GENE: LBA1386, PYRF, PYRF/LBA1386; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 CODON + RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS PSI-BIOLOGY, NYSGRC, 000529, STRUCTURAL GENOMICS, NEW YORK STRUCTURAL KEYWDS 2 GENOMICS RESEARCH CONSORTIUM, TIM BARREL FOLD, PYRIMIDINE KEYWDS 3 METABOLISM; UMP BIOSYNTHESIS VIA DE NOVO PATHWAY; UMP FROM OROTATE, KEYWDS 4 DECARBOXYLASE LYASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR L.SATYANARAYANA,S.CHAMALA,B.EVANS,R.FOTI,A.GIZZI,B.HILLERICH,A.KAR, AUTHOR 2 J.LAFLEUR,R.SEIDEL,G.VILLIGAS,W.ZENCHECK,S.C.ALMO,S.SWAMINATHAN,NEW AUTHOR 3 YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 2 30-OCT-24 3TFX 1 SEQADV LINK REVDAT 1 28-SEP-11 3TFX 0 JRNL AUTH L.SATYANARAYANA,S.C.ALMO,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF OROTIDINE 5'-PHOSPHATE DECARBOXYLASE JRNL TITL 2 FROM LACTOBACILLUS ACIDOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 26005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1360 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1694 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3461 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 283 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.86000 REMARK 3 B22 (A**2) : 0.26000 REMARK 3 B33 (A**2) : 0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.54000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.450 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3521 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4762 ; 1.345 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 451 ; 5.786 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;46.077 ;25.639 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 640 ;16.509 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.316 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 558 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2561 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2261 ; 0.604 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3642 ; 1.175 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1260 ; 2.207 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1120 ; 3.470 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 240 4 REMARK 3 1 B 2 B 240 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1699 ; 0.51 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1699 ; 1.24 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TFX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067432. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27429 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.12200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX & ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V 1,6-HEXANEDIOL, 0.2M MGCL2 AND REMARK 280 20% W/V POLYETHYLENE GLYCOL 3350 , VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.19800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.08500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.19800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.08500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -1 REMARK 465 VAL A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 187 REMARK 465 GLY A 188 REMARK 465 ASN A 189 REMARK 465 ALA A 190 REMARK 465 LYS A 191 REMARK 465 ASP A 192 REMARK 465 ASP A 193 REMARK 465 GLN A 194 REMARK 465 SER A 195 REMARK 465 ARG A 196 REMARK 465 VAL A 197 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 TRP A 250 REMARK 465 SER A 251 REMARK 465 HIS A 252 REMARK 465 PRO A 253 REMARK 465 GLN A 254 REMARK 465 PHE A 255 REMARK 465 GLU A 256 REMARK 465 LYS A 257 REMARK 465 MSE B -1 REMARK 465 VAL B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 187 REMARK 465 GLY B 188 REMARK 465 ASN B 189 REMARK 465 ALA B 190 REMARK 465 LYS B 191 REMARK 465 ASP B 192 REMARK 465 ASP B 193 REMARK 465 GLN B 194 REMARK 465 SER B 195 REMARK 465 ARG B 196 REMARK 465 VAL B 197 REMARK 465 GLU B 237 REMARK 465 ASN B 238 REMARK 465 LEU B 239 REMARK 465 TYR B 240 REMARK 465 PHE B 241 REMARK 465 GLN B 242 REMARK 465 SER B 243 REMARK 465 HIS B 244 REMARK 465 HIS B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 TRP B 250 REMARK 465 SER B 251 REMARK 465 HIS B 252 REMARK 465 PRO B 253 REMARK 465 GLN B 254 REMARK 465 PHE B 255 REMARK 465 GLU B 256 REMARK 465 LYS B 257 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 259 O HOH A 396 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 120 -97.02 -107.71 REMARK 500 PHE A 177 148.98 -177.75 REMARK 500 ASN A 238 63.14 -118.48 REMARK 500 ALA B 109 130.16 -38.33 REMARK 500 THR B 120 -91.49 -103.50 REMARK 500 GLU B 133 -62.06 -109.52 REMARK 500 ASN B 135 62.67 -101.51 REMARK 500 PHE B 177 149.81 -177.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-000529 RELATED DB: TARGETDB DBREF 3TFX A 1 235 UNP Q5FJB3 PYRF_LACAC 1 235 DBREF 3TFX B 1 235 UNP Q5FJB3 PYRF_LACAC 1 235 SEQADV 3TFX MSE A -1 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX VAL A 0 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX ALA A 236 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX GLU A 237 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX ASN A 238 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX LEU A 239 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX TYR A 240 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX PHE A 241 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX GLN A 242 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX SER A 243 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX HIS A 244 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX HIS A 245 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX HIS A 246 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX HIS A 247 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX HIS A 248 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX HIS A 249 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX TRP A 250 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX SER A 251 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX HIS A 252 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX PRO A 253 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX GLN A 254 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX PHE A 255 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX GLU A 256 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX LYS A 257 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX MSE B -1 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX VAL B 0 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX ALA B 236 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX GLU B 237 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX ASN B 238 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX LEU B 239 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX TYR B 240 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX PHE B 241 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX GLN B 242 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX SER B 243 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX HIS B 244 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX HIS B 245 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX HIS B 246 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX HIS B 247 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX HIS B 248 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX HIS B 249 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX TRP B 250 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX SER B 251 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX HIS B 252 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX PRO B 253 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX GLN B 254 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX PHE B 255 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX GLU B 256 UNP Q5FJB3 EXPRESSION TAG SEQADV 3TFX LYS B 257 UNP Q5FJB3 EXPRESSION TAG SEQRES 1 A 259 MSE VAL MSE ASP ARG PRO VAL ILE VAL ALA LEU ASP LEU SEQRES 2 A 259 ASP ASN GLU GLU GLN LEU ASN LYS ILE LEU SER LYS LEU SEQRES 3 A 259 GLY ASP PRO HIS ASP VAL PHE VAL LYS VAL GLY MSE GLU SEQRES 4 A 259 LEU PHE TYR ASN ALA GLY ILE ASP VAL ILE LYS LYS LEU SEQRES 5 A 259 THR GLN GLN GLY TYR LYS ILE PHE LEU ASP LEU LYS MSE SEQRES 6 A 259 HIS ASP ILE PRO ASN THR VAL TYR ASN GLY ALA LYS ALA SEQRES 7 A 259 LEU ALA LYS LEU GLY ILE THR PHE THR THR VAL HIS ALA SEQRES 8 A 259 LEU GLY GLY SER GLN MSE ILE LYS SER ALA LYS ASP GLY SEQRES 9 A 259 LEU ILE ALA GLY THR PRO ALA GLY HIS SER VAL PRO LYS SEQRES 10 A 259 LEU LEU ALA VAL THR GLU LEU THR SER ILE SER ASP ASP SEQRES 11 A 259 VAL LEU ARG ASN GLU GLN ASN CYS ARG LEU PRO MSE ALA SEQRES 12 A 259 GLU GLN VAL LEU SER LEU ALA LYS MSE ALA LYS HIS SER SEQRES 13 A 259 GLY ALA ASP GLY VAL ILE CYS SER PRO LEU GLU VAL LYS SEQRES 14 A 259 LYS LEU HIS GLU ASN ILE GLY ASP ASP PHE LEU TYR VAL SEQRES 15 A 259 THR PRO GLY ILE ARG PRO ALA GLY ASN ALA LYS ASP ASP SEQRES 16 A 259 GLN SER ARG VAL ALA THR PRO LYS MSE ALA LYS GLU TRP SEQRES 17 A 259 GLY SER SER ALA ILE VAL VAL GLY ARG PRO ILE THR LEU SEQRES 18 A 259 ALA SER ASP PRO LYS ALA ALA TYR GLU ALA ILE LYS LYS SEQRES 19 A 259 GLU PHE ASN ALA GLU ASN LEU TYR PHE GLN SER HIS HIS SEQRES 20 A 259 HIS HIS HIS HIS TRP SER HIS PRO GLN PHE GLU LYS SEQRES 1 B 259 MSE VAL MSE ASP ARG PRO VAL ILE VAL ALA LEU ASP LEU SEQRES 2 B 259 ASP ASN GLU GLU GLN LEU ASN LYS ILE LEU SER LYS LEU SEQRES 3 B 259 GLY ASP PRO HIS ASP VAL PHE VAL LYS VAL GLY MSE GLU SEQRES 4 B 259 LEU PHE TYR ASN ALA GLY ILE ASP VAL ILE LYS LYS LEU SEQRES 5 B 259 THR GLN GLN GLY TYR LYS ILE PHE LEU ASP LEU LYS MSE SEQRES 6 B 259 HIS ASP ILE PRO ASN THR VAL TYR ASN GLY ALA LYS ALA SEQRES 7 B 259 LEU ALA LYS LEU GLY ILE THR PHE THR THR VAL HIS ALA SEQRES 8 B 259 LEU GLY GLY SER GLN MSE ILE LYS SER ALA LYS ASP GLY SEQRES 9 B 259 LEU ILE ALA GLY THR PRO ALA GLY HIS SER VAL PRO LYS SEQRES 10 B 259 LEU LEU ALA VAL THR GLU LEU THR SER ILE SER ASP ASP SEQRES 11 B 259 VAL LEU ARG ASN GLU GLN ASN CYS ARG LEU PRO MSE ALA SEQRES 12 B 259 GLU GLN VAL LEU SER LEU ALA LYS MSE ALA LYS HIS SER SEQRES 13 B 259 GLY ALA ASP GLY VAL ILE CYS SER PRO LEU GLU VAL LYS SEQRES 14 B 259 LYS LEU HIS GLU ASN ILE GLY ASP ASP PHE LEU TYR VAL SEQRES 15 B 259 THR PRO GLY ILE ARG PRO ALA GLY ASN ALA LYS ASP ASP SEQRES 16 B 259 GLN SER ARG VAL ALA THR PRO LYS MSE ALA LYS GLU TRP SEQRES 17 B 259 GLY SER SER ALA ILE VAL VAL GLY ARG PRO ILE THR LEU SEQRES 18 B 259 ALA SER ASP PRO LYS ALA ALA TYR GLU ALA ILE LYS LYS SEQRES 19 B 259 GLU PHE ASN ALA GLU ASN LEU TYR PHE GLN SER HIS HIS SEQRES 20 B 259 HIS HIS HIS HIS TRP SER HIS PRO GLN PHE GLU LYS MODRES 3TFX MSE A 36 MET SELENOMETHIONINE MODRES 3TFX MSE A 63 MET SELENOMETHIONINE MODRES 3TFX MSE A 95 MET SELENOMETHIONINE MODRES 3TFX MSE A 140 MET SELENOMETHIONINE MODRES 3TFX MSE A 150 MET SELENOMETHIONINE MODRES 3TFX MSE A 202 MET SELENOMETHIONINE MODRES 3TFX MSE B 36 MET SELENOMETHIONINE MODRES 3TFX MSE B 63 MET SELENOMETHIONINE MODRES 3TFX MSE B 95 MET SELENOMETHIONINE MODRES 3TFX MSE B 140 MET SELENOMETHIONINE MODRES 3TFX MSE B 150 MET SELENOMETHIONINE MODRES 3TFX MSE B 202 MET SELENOMETHIONINE HET MSE A 36 8 HET MSE A 63 8 HET MSE A 95 8 HET MSE A 140 8 HET MSE A 150 8 HET MSE A 202 8 HET MSE B 36 8 HET MSE B 63 8 HET MSE B 95 8 HET MSE B 140 8 HET MSE B 150 8 HET MSE B 202 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 HOH *283(H2 O) HELIX 1 1 ASN A 13 LYS A 23 1 11 HELIX 2 2 ASP A 26 ASP A 29 5 4 HELIX 3 3 GLY A 35 GLY A 43 1 9 HELIX 4 4 GLY A 43 GLN A 53 1 11 HELIX 5 5 ILE A 66 LYS A 79 1 14 HELIX 6 6 GLY A 92 THR A 107 1 16 HELIX 7 7 SER A 126 GLU A 133 1 8 HELIX 8 8 PRO A 139 SER A 154 1 16 HELIX 9 9 SER A 162 LEU A 164 5 3 HELIX 10 10 GLU A 165 GLY A 174 1 10 HELIX 11 11 THR A 199 TRP A 206 1 8 HELIX 12 12 GLY A 214 LEU A 219 1 6 HELIX 13 13 ASP A 222 ASN A 235 1 14 HELIX 14 14 ASN B 13 LYS B 23 1 11 HELIX 15 15 ASP B 26 ASP B 29 5 4 HELIX 16 16 MSE B 36 TYR B 40 1 5 HELIX 17 17 ILE B 44 GLY B 54 1 11 HELIX 18 18 ILE B 66 LYS B 79 1 14 HELIX 19 19 GLY B 92 THR B 107 1 16 HELIX 20 20 SER B 126 GLU B 133 1 8 HELIX 21 21 PRO B 139 SER B 154 1 16 HELIX 22 22 GLU B 165 GLY B 174 1 10 HELIX 23 23 THR B 199 TRP B 206 1 8 HELIX 24 24 GLY B 214 LEU B 219 1 6 HELIX 25 25 ASP B 222 ALA B 236 1 15 SHEET 1 A 9 VAL A 5 ALA A 8 0 SHEET 2 A 9 PHE A 31 VAL A 34 1 O PHE A 31 N VAL A 7 SHEET 3 A 9 LYS A 56 MSE A 63 1 O PHE A 58 N VAL A 32 SHEET 4 A 9 PHE A 84 HIS A 88 1 O PHE A 84 N LEU A 59 SHEET 5 A 9 LYS A 115 VAL A 119 1 O VAL A 119 N VAL A 87 SHEET 6 A 9 GLY A 158 ILE A 160 1 O GLY A 158 N ALA A 118 SHEET 7 A 9 LEU A 178 THR A 181 1 O VAL A 180 N VAL A 159 SHEET 8 A 9 ALA A 210 VAL A 213 1 O ALA A 210 N THR A 181 SHEET 9 A 9 VAL A 5 ALA A 8 1 N ILE A 6 O ILE A 211 SHEET 1 B 9 VAL B 5 ALA B 8 0 SHEET 2 B 9 PHE B 31 GLY B 35 1 O PHE B 31 N VAL B 7 SHEET 3 B 9 LYS B 56 MSE B 63 1 O ASP B 60 N VAL B 34 SHEET 4 B 9 PHE B 84 HIS B 88 1 O HIS B 88 N MSE B 63 SHEET 5 B 9 LYS B 115 VAL B 119 1 O LEU B 117 N THR B 85 SHEET 6 B 9 GLY B 158 ILE B 160 1 O GLY B 158 N ALA B 118 SHEET 7 B 9 LEU B 178 THR B 181 1 O VAL B 180 N VAL B 159 SHEET 8 B 9 ALA B 210 VAL B 213 1 O ALA B 210 N THR B 181 SHEET 9 B 9 VAL B 5 ALA B 8 1 N ILE B 6 O ILE B 211 LINK C GLY A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N GLU A 37 1555 1555 1.33 LINK C LYS A 62 N MSE A 63 1555 1555 1.33 LINK C MSE A 63 N HIS A 64 1555 1555 1.33 LINK C GLN A 94 N MSE A 95 1555 1555 1.33 LINK C MSE A 95 N ILE A 96 1555 1555 1.33 LINK C PRO A 139 N MSE A 140 1555 1555 1.33 LINK C MSE A 140 N ALA A 141 1555 1555 1.34 LINK C LYS A 149 N MSE A 150 1555 1555 1.33 LINK C MSE A 150 N ALA A 151 1555 1555 1.33 LINK C LYS A 201 N MSE A 202 1555 1555 1.33 LINK C MSE A 202 N ALA A 203 1555 1555 1.34 LINK C GLY B 35 N MSE B 36 1555 1555 1.33 LINK C MSE B 36 N GLU B 37 1555 1555 1.33 LINK C LYS B 62 N MSE B 63 1555 1555 1.34 LINK C MSE B 63 N HIS B 64 1555 1555 1.32 LINK C GLN B 94 N MSE B 95 1555 1555 1.33 LINK C MSE B 95 N ILE B 96 1555 1555 1.33 LINK C PRO B 139 N MSE B 140 1555 1555 1.33 LINK C MSE B 140 N ALA B 141 1555 1555 1.34 LINK C LYS B 149 N MSE B 150 1555 1555 1.32 LINK C MSE B 150 N ALA B 151 1555 1555 1.34 LINK C LYS B 201 N MSE B 202 1555 1555 1.33 LINK C MSE B 202 N ALA B 203 1555 1555 1.33 CRYST1 130.396 68.170 63.930 90.00 106.31 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007669 0.000000 0.002243 0.00000 SCALE2 0.000000 0.014669 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016298 0.00000