HEADER HYDROLASE 19-AUG-11 3THN TITLE CRYSTAL STRUCTURE OF MRE11 CORE WITH MANGANESE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXONUCLEASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CORE DOMAIN, UNP RESIDUES 7-325; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: MRE11, TM_1635; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA BREAKS, HOMOLOGOUS RECOMBINATION, DNA BINDING PROTEIN, KEYWDS 2 ENDODEOXYRIBONUCLEASES, EXODEOXYRIBONUCLEASES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.MOECKEL,K.LAMMENS REVDAT 4 28-FEB-24 3THN 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3THN 1 REMARK REVDAT 2 01-FEB-12 3THN 1 JRNL REVDAT 1 12-OCT-11 3THN 0 JRNL AUTH C.MOCKEL,K.LAMMENS,A.SCHELE,K.P.HOPFNER JRNL TITL ATP DRIVEN STRUCTURAL CHANGES OF THE BACTERIAL MRE11:RAD50 JRNL TITL 2 CATALYTIC HEAD COMPLEX. JRNL REF NUCLEIC ACIDS RES. V. 40 914 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 21937514 JRNL DOI 10.1093/NAR/GKR749 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 17309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0640 - 6.4300 0.96 1399 155 0.1984 0.2443 REMARK 3 2 6.4300 - 5.1058 0.98 1332 149 0.1825 0.2375 REMARK 3 3 5.1058 - 4.4610 0.98 1310 145 0.1312 0.1696 REMARK 3 4 4.4610 - 4.0534 0.98 1296 145 0.1437 0.1831 REMARK 3 5 4.0534 - 3.7630 0.99 1292 143 0.1564 0.2192 REMARK 3 6 3.7630 - 3.5412 0.99 1298 144 0.1832 0.2302 REMARK 3 7 3.5412 - 3.3639 0.99 1273 141 0.2133 0.2424 REMARK 3 8 3.3639 - 3.2175 0.99 1285 143 0.2043 0.2920 REMARK 3 9 3.2175 - 3.0937 1.00 1278 142 0.2199 0.2873 REMARK 3 10 3.0937 - 2.9870 0.99 1290 143 0.2317 0.3244 REMARK 3 11 2.9870 - 2.8936 1.00 1257 141 0.2557 0.3214 REMARK 3 12 2.8936 - 2.8109 0.97 1268 140 0.2838 0.3419 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 18.60 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.740 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.96760 REMARK 3 B22 (A**2) : -2.96760 REMARK 3 B33 (A**2) : 5.93510 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2600 REMARK 3 ANGLE : 1.230 3500 REMARK 3 CHIRALITY : 0.091 385 REMARK 3 PLANARITY : 0.005 449 REMARK 3 DIHEDRAL : 17.830 989 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3THN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067488. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17314 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.811 REMARK 200 RESOLUTION RANGE LOW (A) : 46.058 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 17.820 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM SULFATE, 0.1M BIS TRIS REMARK 280 PROPANE, PH 6.5, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.03400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.06800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.55100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 102.58500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.51700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.03400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 82.06800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 102.58500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 61.55100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 20.51700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -139.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -20.51700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 3 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 192 REMARK 465 GLU A 193 REMARK 465 GLN A 194 REMARK 465 GLY A 195 REMARK 465 GLY A 308 REMARK 465 ILE A 309 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 43 CD OE1 OE2 REMARK 480 ARG A 83 NE CZ NH1 NH2 REMARK 480 LYS A 97 CE NZ REMARK 480 GLU A 120 CD OE1 OE2 REMARK 480 GLU A 125 CD OE1 OE2 REMARK 480 LYS A 131 CE NZ REMARK 480 ARG A 147 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS A 148 CB CG CD CE NZ REMARK 480 GLU A 150 CD OE1 OE2 REMARK 480 PHE A 155 CG CE1 REMARK 480 GLU A 158 CD OE1 OE2 REMARK 480 LYS A 163 NZ REMARK 480 GLU A 172 OE1 OE2 REMARK 480 LYS A 225 CD CE NZ REMARK 480 GLN A 226 CG CD OE1 NE2 REMARK 480 ASP A 239 CG OD1 OD2 REMARK 480 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 261 CZ NH1 NH2 REMARK 480 LYS A 278 CD CE NZ REMARK 480 LYS A 279 CD CE NZ REMARK 480 GLU A 304 CD OE1 OE2 REMARK 480 GLU A 305 OE1 OE2 REMARK 480 ASP A 306 CB CG OD1 OD2 REMARK 480 LEU A 310 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 SO4 A 3 O3 SO4 A 3 10554 0.62 REMARK 500 O2 SO4 A 3 O4 SO4 A 3 10554 0.81 REMARK 500 S SO4 A 3 O3 SO4 A 3 10554 1.44 REMARK 500 S SO4 A 3 O2 SO4 A 3 10554 1.45 REMARK 500 S SO4 A 3 O1 SO4 A 3 10554 1.50 REMARK 500 S SO4 A 3 O4 SO4 A 3 10554 1.54 REMARK 500 O2 SO4 A 3 O2 SO4 A 3 10554 1.93 REMARK 500 O3 SO4 A 3 O4 SO4 A 3 10554 2.06 REMARK 500 O1 SO4 A 3 O1 SO4 A 3 10554 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 25 -38.95 -148.74 REMARK 500 ARG A 26 87.56 -168.74 REMARK 500 THR A 56 33.28 -95.29 REMARK 500 GLU A 172 -76.87 -92.49 REMARK 500 GLU A 184 61.68 -57.31 REMARK 500 HIS A 216 -30.07 131.30 REMARK 500 LYS A 278 -72.82 -69.41 REMARK 500 ASP A 281 -161.64 -79.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 188 TYR A 189 148.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 360 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 14 OD2 REMARK 620 2 HIS A 16 NE2 124.9 REMARK 620 3 ASP A 58 OD2 88.3 107.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 361 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 58 OD2 REMARK 620 2 ASN A 93 OD1 124.3 REMARK 620 3 HIS A 180 NE2 92.1 84.5 REMARK 620 4 HIS A 216 ND1 135.2 97.8 107.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3THO RELATED DB: PDB DBREF 3THN A 7 325 UNP Q9X1X0 Q9X1X0_THEMA 7 325 SEQADV 3THN MET A 7 UNP Q9X1X0 LEU 7 CONFLICT SEQADV 3THN GLN A 94 UNP Q9X1X0 HIS 94 ENGINEERED MUTATION SEQADV 3THN SER A 291 UNP Q9X1X0 PHE 291 ENGINEERED MUTATION SEQRES 1 A 319 MET LYS ILE LEU HIS THR SER ASP TRP HIS LEU GLY VAL SEQRES 2 A 319 THR SER TRP THR SER SER ARG PRO VAL ASP ARG ARG GLU SEQRES 3 A 319 GLU LEU LYS LYS ALA LEU ASP LYS VAL VAL GLU GLU ALA SEQRES 4 A 319 GLU LYS ARG GLU VAL ASP LEU ILE LEU LEU THR GLY ASP SEQRES 5 A 319 LEU LEU HIS SER ARG ASN ASN PRO SER VAL VAL ALA LEU SEQRES 6 A 319 HIS ASP LEU LEU ASP TYR LEU LYS ARG MET MET ARG THR SEQRES 7 A 319 ALA PRO VAL VAL VAL LEU PRO GLY ASN GLN ASP TRP LYS SEQRES 8 A 319 GLY LEU LYS LEU PHE GLY ASN PHE VAL THR SER ILE SER SEQRES 9 A 319 SER ASP ILE THR PHE VAL MET SER PHE GLU PRO VAL ASP SEQRES 10 A 319 VAL GLU ALA LYS ARG GLY GLN LYS VAL ARG ILE LEU PRO SEQRES 11 A 319 PHE PRO TYR PRO ASP GLU SER GLU ALA LEU ARG LYS ASN SEQRES 12 A 319 GLU GLY ASP PHE ARG PHE PHE LEU GLU SER ARG LEU ASN SEQRES 13 A 319 LYS LEU TYR GLU GLU ALA LEU LYS LYS GLU ASP PHE ALA SEQRES 14 A 319 ILE PHE MET GLY HIS PHE THR VAL GLU GLY LEU ALA GLY SEQRES 15 A 319 TYR ALA GLY ILE GLU GLN GLY ARG GLU ILE ILE ILE ASN SEQRES 16 A 319 ARG ALA LEU ILE PRO SER VAL VAL ASP TYR ALA ALA LEU SEQRES 17 A 319 GLY HIS ILE HIS SER PHE ARG GLU ILE GLN LYS GLN PRO SEQRES 18 A 319 LEU THR ILE TYR PRO GLY SER LEU ILE ARG ILE ASP PHE SEQRES 19 A 319 GLY GLU GLU ALA ASP GLU LYS GLY ALA VAL PHE VAL GLU SEQRES 20 A 319 LEU LYS ARG GLY GLU PRO PRO ARG TYR GLU ARG ILE ASP SEQRES 21 A 319 ALA SER PRO LEU PRO LEU LYS THR LEU TYR TYR LYS LYS SEQRES 22 A 319 ILE ASP THR SER ALA LEU LYS SER ILE ARG ASP SER CYS SEQRES 23 A 319 ARG ASN PHE PRO GLY TYR VAL ARG VAL VAL TYR GLU GLU SEQRES 24 A 319 ASP SER GLY ILE LEU PRO ASP LEU MET GLY GLU ILE ASP SEQRES 25 A 319 ASN LEU VAL LYS ILE GLU ARG HET MN A 360 1 HET MN A 361 1 HET SO4 A 1 5 HET SO4 A 2 5 HET SO4 A 3 5 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION FORMUL 2 MN 2(MN 2+) FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *12(H2 O) HELIX 1 1 ARG A 30 ARG A 48 1 19 HELIX 2 2 SER A 67 ALA A 85 1 19 HELIX 3 3 TRP A 96 SER A 110 1 15 HELIX 4 4 GLU A 142 ASN A 149 1 8 HELIX 5 5 PHE A 153 LEU A 169 1 17 HELIX 6 6 ASN A 201 ILE A 205 5 5 HELIX 7 7 ASP A 239 GLU A 243 5 5 HELIX 8 8 ASP A 281 ARG A 293 1 13 HELIX 9 9 ASP A 312 ILE A 317 1 6 SHEET 1 A 6 ILE A 113 PHE A 115 0 SHEET 2 A 6 VAL A 87 VAL A 89 1 N VAL A 89 O THR A 114 SHEET 3 A 6 LEU A 52 LEU A 55 1 N ILE A 53 O VAL A 88 SHEET 4 A 6 LYS A 8 THR A 12 1 N LEU A 10 O LEU A 54 SHEET 5 A 6 GLY A 248 GLU A 253 -1 O VAL A 250 N HIS A 11 SHEET 6 A 6 ARG A 261 ASP A 266 -1 O GLU A 263 N PHE A 251 SHEET 1 B 2 THR A 20 SER A 21 0 SHEET 2 B 2 VAL A 28 ASP A 29 -1 O VAL A 28 N SER A 21 SHEET 1 C 6 VAL A 122 GLU A 125 0 SHEET 2 C 6 LYS A 131 PHE A 137 -1 O VAL A 132 N VAL A 124 SHEET 3 C 6 PHE A 174 HIS A 180 1 O ILE A 176 N ARG A 133 SHEET 4 C 6 TYR A 211 GLY A 215 1 O ALA A 213 N PHE A 177 SHEET 5 C 6 THR A 229 TYR A 231 1 O ILE A 230 N LEU A 214 SHEET 6 C 6 ARG A 221 GLN A 224 -1 N GLN A 224 O THR A 229 SHEET 1 D 3 LEU A 272 LYS A 279 0 SHEET 2 D 3 TYR A 298 GLU A 305 1 O GLU A 305 N LYS A 278 SHEET 3 D 3 LEU A 320 GLU A 324 1 O LYS A 322 N VAL A 301 LINK OD2 ASP A 14 MN MN A 360 1555 1555 2.38 LINK NE2 HIS A 16 MN MN A 360 1555 1555 2.74 LINK OD2 ASP A 58 MN MN A 360 1555 1555 2.59 LINK OD2 ASP A 58 MN MN A 361 1555 1555 2.21 LINK OD1 ASN A 93 MN MN A 361 1555 1555 2.04 LINK NE2 HIS A 180 MN MN A 361 1555 1555 2.17 LINK ND1 HIS A 216 MN MN A 361 1555 1555 2.19 CISPEP 1 ALA A 187 GLY A 188 0 -8.74 CISPEP 2 ALA A 190 GLY A 191 0 -10.04 CISPEP 3 GLN A 226 PRO A 227 0 2.90 SITE 1 AC1 5 ASP A 14 HIS A 16 ASP A 58 HIS A 216 SITE 2 AC1 5 HIS A 218 SITE 1 AC2 4 ASP A 58 ASN A 93 HIS A 180 HIS A 216 SITE 1 AC3 3 MET A 7 GLN A 130 LYS A 255 SITE 1 AC4 2 ARG A 128 LYS A 255 SITE 1 AC5 3 LEU A 186 ARG A 202 ARG A 221 CRYST1 138.859 138.859 123.102 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007202 0.004158 0.000000 0.00000 SCALE2 0.000000 0.008316 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008123 0.00000