data_3THP # _entry.id 3THP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3THP pdb_00003thp 10.2210/pdb3thp/pdb RCSB RCSB067490 ? ? WWPDB D_1000067490 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB HR5601B . unspecified PDB 3THT . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3THP _pdbx_database_status.recvd_initial_deposition_date 2011-08-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pastore, C.' 1 'Topalidou, I.' 2 'Forouhar, F.' 3 'Yan, A.C.' 4 'Levy, M.' 5 'Hunt, J.F.' 6 'Northeast Structural Genomics Consortium (NESG)' 7 # _citation.id primary _citation.title ;Crystal structure and RNA binding properties of the RNA recognition motif (RRM) and AlkB domains in human AlkB homolog 8 (ABH8), an enzyme catalyzing tRNA hypermodification. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 287 _citation.page_first 2130 _citation.page_last 2143 _citation.year 2012 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22065580 _citation.pdbx_database_id_DOI 10.1074/jbc.M111.286187 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pastore, C.' 1 ? primary 'Topalidou, I.' 2 ? primary 'Forouhar, F.' 3 ? primary 'Yan, A.C.' 4 ? primary 'Levy, M.' 5 ? primary 'Hunt, J.F.' 6 ? # _cell.entry_id 3THP _cell.length_a 68.276 _cell.length_b 81.675 _cell.length_c 144.720 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3THP _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alkylated DNA repair protein alkB homolog 8' 39687.945 1 1.14.11.- ? 'RRM and AlkB domains of ABH8' ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 4 non-polymer syn '2-OXOGLUTARIC ACID' 146.098 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Probable alpha-ketoglutarate-dependent dioxygenase ABH8' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;AKHTLLRHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALL(MSE)PPNKPYSFARYRTTEESKRAYVTL NGKEVVDDLGQKITLYLNFVEKVQWKELRPQALPPGL(MSE)VVEEIISSEEEK(MSE)LLESVDWTEDTDNQNSQKSLK HRRVKHFGYEFHYENNNVDKDKPLSGGLPDICESFLEKWLRKGYIKHKPDQ(MSE)TINQYEPGQGIPAHIDTHSAFEDE IVSLSLGSEIV(MSE)DFKHPDGIAVPV(MSE)LPRRSLLV(MSE)TGESRYLWTHGITCRKFDTVQASESLKSGIITSD VGDLTLSKRGLRTSFTFRKVRQTPCNCSYPLVCDSQRKENLYFQGLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;AKHTLLRHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKE VVDDLGQKITLYLNFVEKVQWKELRPQALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFH YENNNVDKDKPLSGGLPDICESFLEKWLRKGYIKHKPDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFKH PDGIAVPVMLPRRSLLVMTGESRYLWTHGITCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQTPCNCS YPLVCDSQRKENLYFQGLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier HR5601B # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 LYS n 1 3 HIS n 1 4 THR n 1 5 LEU n 1 6 LEU n 1 7 ARG n 1 8 HIS n 1 9 GLU n 1 10 GLY n 1 11 ILE n 1 12 GLU n 1 13 THR n 1 14 VAL n 1 15 SER n 1 16 TYR n 1 17 ALA n 1 18 THR n 1 19 GLN n 1 20 SER n 1 21 LEU n 1 22 VAL n 1 23 VAL n 1 24 ALA n 1 25 ASN n 1 26 GLY n 1 27 GLY n 1 28 LEU n 1 29 GLY n 1 30 ASN n 1 31 GLY n 1 32 VAL n 1 33 SER n 1 34 ARG n 1 35 ASN n 1 36 GLN n 1 37 LEU n 1 38 LEU n 1 39 PRO n 1 40 VAL n 1 41 LEU n 1 42 GLU n 1 43 LYS n 1 44 CYS n 1 45 GLY n 1 46 LEU n 1 47 VAL n 1 48 ASP n 1 49 ALA n 1 50 LEU n 1 51 LEU n 1 52 MSE n 1 53 PRO n 1 54 PRO n 1 55 ASN n 1 56 LYS n 1 57 PRO n 1 58 TYR n 1 59 SER n 1 60 PHE n 1 61 ALA n 1 62 ARG n 1 63 TYR n 1 64 ARG n 1 65 THR n 1 66 THR n 1 67 GLU n 1 68 GLU n 1 69 SER n 1 70 LYS n 1 71 ARG n 1 72 ALA n 1 73 TYR n 1 74 VAL n 1 75 THR n 1 76 LEU n 1 77 ASN n 1 78 GLY n 1 79 LYS n 1 80 GLU n 1 81 VAL n 1 82 VAL n 1 83 ASP n 1 84 ASP n 1 85 LEU n 1 86 GLY n 1 87 GLN n 1 88 LYS n 1 89 ILE n 1 90 THR n 1 91 LEU n 1 92 TYR n 1 93 LEU n 1 94 ASN n 1 95 PHE n 1 96 VAL n 1 97 GLU n 1 98 LYS n 1 99 VAL n 1 100 GLN n 1 101 TRP n 1 102 LYS n 1 103 GLU n 1 104 LEU n 1 105 ARG n 1 106 PRO n 1 107 GLN n 1 108 ALA n 1 109 LEU n 1 110 PRO n 1 111 PRO n 1 112 GLY n 1 113 LEU n 1 114 MSE n 1 115 VAL n 1 116 VAL n 1 117 GLU n 1 118 GLU n 1 119 ILE n 1 120 ILE n 1 121 SER n 1 122 SER n 1 123 GLU n 1 124 GLU n 1 125 GLU n 1 126 LYS n 1 127 MSE n 1 128 LEU n 1 129 LEU n 1 130 GLU n 1 131 SER n 1 132 VAL n 1 133 ASP n 1 134 TRP n 1 135 THR n 1 136 GLU n 1 137 ASP n 1 138 THR n 1 139 ASP n 1 140 ASN n 1 141 GLN n 1 142 ASN n 1 143 SER n 1 144 GLN n 1 145 LYS n 1 146 SER n 1 147 LEU n 1 148 LYS n 1 149 HIS n 1 150 ARG n 1 151 ARG n 1 152 VAL n 1 153 LYS n 1 154 HIS n 1 155 PHE n 1 156 GLY n 1 157 TYR n 1 158 GLU n 1 159 PHE n 1 160 HIS n 1 161 TYR n 1 162 GLU n 1 163 ASN n 1 164 ASN n 1 165 ASN n 1 166 VAL n 1 167 ASP n 1 168 LYS n 1 169 ASP n 1 170 LYS n 1 171 PRO n 1 172 LEU n 1 173 SER n 1 174 GLY n 1 175 GLY n 1 176 LEU n 1 177 PRO n 1 178 ASP n 1 179 ILE n 1 180 CYS n 1 181 GLU n 1 182 SER n 1 183 PHE n 1 184 LEU n 1 185 GLU n 1 186 LYS n 1 187 TRP n 1 188 LEU n 1 189 ARG n 1 190 LYS n 1 191 GLY n 1 192 TYR n 1 193 ILE n 1 194 LYS n 1 195 HIS n 1 196 LYS n 1 197 PRO n 1 198 ASP n 1 199 GLN n 1 200 MSE n 1 201 THR n 1 202 ILE n 1 203 ASN n 1 204 GLN n 1 205 TYR n 1 206 GLU n 1 207 PRO n 1 208 GLY n 1 209 GLN n 1 210 GLY n 1 211 ILE n 1 212 PRO n 1 213 ALA n 1 214 HIS n 1 215 ILE n 1 216 ASP n 1 217 THR n 1 218 HIS n 1 219 SER n 1 220 ALA n 1 221 PHE n 1 222 GLU n 1 223 ASP n 1 224 GLU n 1 225 ILE n 1 226 VAL n 1 227 SER n 1 228 LEU n 1 229 SER n 1 230 LEU n 1 231 GLY n 1 232 SER n 1 233 GLU n 1 234 ILE n 1 235 VAL n 1 236 MSE n 1 237 ASP n 1 238 PHE n 1 239 LYS n 1 240 HIS n 1 241 PRO n 1 242 ASP n 1 243 GLY n 1 244 ILE n 1 245 ALA n 1 246 VAL n 1 247 PRO n 1 248 VAL n 1 249 MSE n 1 250 LEU n 1 251 PRO n 1 252 ARG n 1 253 ARG n 1 254 SER n 1 255 LEU n 1 256 LEU n 1 257 VAL n 1 258 MSE n 1 259 THR n 1 260 GLY n 1 261 GLU n 1 262 SER n 1 263 ARG n 1 264 TYR n 1 265 LEU n 1 266 TRP n 1 267 THR n 1 268 HIS n 1 269 GLY n 1 270 ILE n 1 271 THR n 1 272 CYS n 1 273 ARG n 1 274 LYS n 1 275 PHE n 1 276 ASP n 1 277 THR n 1 278 VAL n 1 279 GLN n 1 280 ALA n 1 281 SER n 1 282 GLU n 1 283 SER n 1 284 LEU n 1 285 LYS n 1 286 SER n 1 287 GLY n 1 288 ILE n 1 289 ILE n 1 290 THR n 1 291 SER n 1 292 ASP n 1 293 VAL n 1 294 GLY n 1 295 ASP n 1 296 LEU n 1 297 THR n 1 298 LEU n 1 299 SER n 1 300 LYS n 1 301 ARG n 1 302 GLY n 1 303 LEU n 1 304 ARG n 1 305 THR n 1 306 SER n 1 307 PHE n 1 308 THR n 1 309 PHE n 1 310 ARG n 1 311 LYS n 1 312 VAL n 1 313 ARG n 1 314 GLN n 1 315 THR n 1 316 PRO n 1 317 CYS n 1 318 ASN n 1 319 CYS n 1 320 SER n 1 321 TYR n 1 322 PRO n 1 323 LEU n 1 324 VAL n 1 325 CYS n 1 326 ASP n 1 327 SER n 1 328 GLN n 1 329 ARG n 1 330 LYS n 1 331 GLU n 1 332 ASN n 1 333 LEU n 1 334 TYR n 1 335 PHE n 1 336 GLN n 1 337 GLY n 1 338 LEU n 1 339 GLU n 1 340 HIS n 1 341 HIS n 1 342 HIS n 1 343 HIS n 1 344 HIS n 1 345 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ABH8, ALKBH8' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834(lambda)(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pET26 _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ALKB8_HUMAN _struct_ref.pdbx_db_accession Q96BT7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AKHTLLRHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKE VVDDLGQKITLYLNFVEKVQWKELRPQALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFH YENNNVDKDKPLSGGLPDICESFLEKWLRKGYIKHKPDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFKH PDGIAVPVMLPRRSLLVMTGESRYLWTHGITCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQTPCNCS YPLVCDSQRKE ; _struct_ref.pdbx_align_begin 25 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3THP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 331 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q96BT7 _struct_ref_seq.db_align_beg 25 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 355 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 25 _struct_ref_seq.pdbx_auth_seq_align_end 355 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3THP ASN A 332 ? UNP Q96BT7 ? ? 'expression tag' 356 1 1 3THP LEU A 333 ? UNP Q96BT7 ? ? 'expression tag' 357 2 1 3THP TYR A 334 ? UNP Q96BT7 ? ? 'expression tag' 358 3 1 3THP PHE A 335 ? UNP Q96BT7 ? ? 'expression tag' 359 4 1 3THP GLN A 336 ? UNP Q96BT7 ? ? 'expression tag' 360 5 1 3THP GLY A 337 ? UNP Q96BT7 ? ? 'expression tag' 361 6 1 3THP LEU A 338 ? UNP Q96BT7 ? ? 'expression tag' 362 7 1 3THP GLU A 339 ? UNP Q96BT7 ? ? 'expression tag' 363 8 1 3THP HIS A 340 ? UNP Q96BT7 ? ? 'expression tag' 364 9 1 3THP HIS A 341 ? UNP Q96BT7 ? ? 'expression tag' 365 10 1 3THP HIS A 342 ? UNP Q96BT7 ? ? 'expression tag' 366 11 1 3THP HIS A 343 ? UNP Q96BT7 ? ? 'expression tag' 367 12 1 3THP HIS A 344 ? UNP Q96BT7 ? ? 'expression tag' 368 13 1 3THP HIS A 345 ? UNP Q96BT7 ? ? 'expression tag' 369 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AKG non-polymer . '2-OXOGLUTARIC ACID' ? 'C5 H6 O5' 146.098 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3THP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_percent_sol 51.61 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'microbatch under oil' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details '30% PEG 3350 and 0.15 M D/L malic acid, 2.8 mM MnCl2, and 8.6 mM 2-oxyglutarate., pH 7, microbatch under oil, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2010-11-10 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97885 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97885 # _reflns.entry_id 3THP _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 40 _reflns.d_resolution_high 3.2 _reflns.number_obs 12770 _reflns.number_all 12782 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.154 _reflns.pdbx_Rsym_value 0.124 _reflns.pdbx_netI_over_sigmaI 14.3 _reflns.B_iso_Wilson_estimate 42.5 _reflns.pdbx_redundancy 7.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.2 _reflns_shell.d_res_low 3.31 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.437 _reflns_shell.pdbx_Rsym_value 0.393 _reflns_shell.meanI_over_sigI_obs 3.7 _reflns_shell.pdbx_redundancy 6.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1293 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3THP _refine.ls_number_reflns_obs 12202 _refine.ls_number_reflns_all 12782 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 296587.36 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.57 _refine.ls_d_res_high 3.20 _refine.ls_percent_reflns_obs 94.9 _refine.ls_R_factor_obs 0.217 _refine.ls_R_factor_all 0.220 _refine.ls_R_factor_R_work 0.217 _refine.ls_R_factor_R_free 0.283 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 1210 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 44.2 _refine.aniso_B[1][1] -12.99 _refine.aniso_B[2][2] 24.43 _refine.aniso_B[3][3] -11.44 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.35 _refine.solvent_model_param_bsol 24.031 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB entry 2CQ2 for RRM domain, PDB entry 2FDI for AlkB domain.' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3THP _refine_analyze.Luzzati_coordinate_error_obs 0.35 _refine_analyze.Luzzati_sigma_a_obs 0.48 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.50 _refine_analyze.Luzzati_sigma_a_free 0.59 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2413 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2425 _refine_hist.d_res_high 3.20 _refine_hist.d_res_low 35.57 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d 0.009 ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg 1.1 ? ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d 25.0 ? ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d 0.76 ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 3.20 _refine_ls_shell.d_res_low 3.31 _refine_ls_shell.number_reflns_R_work 950 _refine_ls_shell.R_factor_R_work 0.307 _refine_ls_shell.percent_reflns_obs 79.8 _refine_ls_shell.R_factor_R_free 0.385 _refine_ls_shell.R_factor_R_free_error 0.041 _refine_ls_shell.percent_reflns_R_free 8.5 _refine_ls_shell.number_reflns_R_free 88 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 950 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3THP _struct.title ;Crystal structure and RNA binding properties of the RRM/AlkB domains in human ABH8, an enzyme catalyzing tRNA hypermodification, Northeast Structural Genomics Consortium Target HR5601B ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3THP _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text ;Structural Genomics, PSI-Biology, Northeast Structural Genomics Consortium, NESG, alpha-beta two domain-protein containing a zinc structure motif, tRNA modifying enzyme, OXIDOREDUCTASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ;The light scattering data of this construct without C-tag shows mainly monomeric protein in the solution, while the same construct with C-tag appears to have population of monomer and tetrameric species. Consistent with the latter observation, the crystal structure reveals that a few residues of the C-tag play an important role in protein tetramerization, which is possibly not a physiological phenomenon ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 27 ? GLY A 31 ? GLY A 51 GLY A 55 5 ? 5 HELX_P HELX_P2 2 SER A 33 ? GLU A 42 ? SER A 57 GLU A 66 1 ? 10 HELX_P HELX_P3 3 THR A 65 ? LEU A 76 ? THR A 89 LEU A 100 1 ? 12 HELX_P HELX_P4 4 SER A 121 ? GLU A 130 ? SER A 145 GLU A 154 1 ? 10 HELX_P HELX_P5 5 PRO A 177 ? GLY A 191 ? PRO A 201 GLY A 215 1 ? 15 HELX_P HELX_P6 6 GLY A 260 ? LEU A 265 ? GLY A 284 LEU A 289 1 ? 6 HELX_P HELX_P7 7 TYR A 321 ? CYS A 325 ? TYR A 345 CYS A 349 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 51 C ? ? ? 1_555 A MSE 52 N ? ? A LEU 75 A MSE 76 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 52 C ? ? ? 1_555 A PRO 53 N ? ? A MSE 76 A PRO 77 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale3 covale both ? A LEU 113 C ? ? ? 1_555 A MSE 114 N ? ? A LEU 137 A MSE 138 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale4 covale both ? A MSE 114 C ? ? ? 1_555 A VAL 115 N ? ? A MSE 138 A VAL 139 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale5 covale both ? A LYS 126 C ? ? ? 1_555 A MSE 127 N ? ? A LYS 150 A MSE 151 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale6 covale both ? A MSE 127 C ? ? ? 1_555 A LEU 128 N ? ? A MSE 151 A LEU 152 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale7 covale both ? A GLN 199 C ? ? ? 1_555 A MSE 200 N ? ? A GLN 223 A MSE 224 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale8 covale both ? A MSE 200 C ? ? ? 1_555 A THR 201 N ? ? A MSE 224 A THR 225 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale9 covale both ? A VAL 235 C ? ? ? 1_555 A MSE 236 N ? ? A VAL 259 A MSE 260 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale10 covale both ? A MSE 236 C ? ? ? 1_555 A ASP 237 N ? ? A MSE 260 A ASP 261 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale11 covale both ? A VAL 248 C ? ? ? 1_555 A MSE 249 N ? ? A VAL 272 A MSE 273 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale12 covale both ? A MSE 249 C ? ? ? 1_555 A LEU 250 N ? ? A MSE 273 A LEU 274 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale13 covale both ? A VAL 257 C ? ? ? 1_555 A MSE 258 N ? ? A VAL 281 A MSE 282 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale14 covale both ? A MSE 258 C ? ? ? 1_555 A THR 259 N ? ? A MSE 282 A THR 283 1_555 ? ? ? ? ? ? ? 1.331 ? ? metalc1 metalc ? ? A HIS 214 NE2 ? ? ? 1_555 C MN . MN ? ? A HIS 238 A MN 402 1_555 ? ? ? ? ? ? ? 2.341 ? ? metalc2 metalc ? ? A ASP 216 OD2 ? ? ? 1_555 C MN . MN ? ? A ASP 240 A MN 402 1_555 ? ? ? ? ? ? ? 2.381 ? ? metalc3 metalc ? ? A HIS 218 ND1 ? ? ? 1_555 B ZN . ZN ? ? A HIS 242 A ZN 401 1_555 ? ? ? ? ? ? ? 2.414 ? ? metalc4 metalc ? ? A HIS 268 NE2 ? ? ? 1_555 C MN . MN ? ? A HIS 292 A MN 402 1_555 ? ? ? ? ? ? ? 2.560 ? ? metalc5 metalc ? ? A CYS 317 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 341 A ZN 401 1_555 ? ? ? ? ? ? ? 2.452 ? ? metalc6 metalc ? ? A CYS 319 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 343 A ZN 401 1_555 ? ? ? ? ? ? ? 2.287 ? ? metalc7 metalc ? ? A CYS 325 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 349 A ZN 401 1_555 ? ? ? ? ? ? ? 2.564 ? ? metalc8 metalc ? ? C MN . MN ? ? ? 1_555 D AKG . O2 ? ? A MN 402 A AKG 403 1_555 ? ? ? ? ? ? ? 2.412 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? C ? 6 ? D ? 2 ? E ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 23 ? ALA A 24 ? VAL A 47 ALA A 48 A 2 TYR A 58 ? TYR A 63 ? TYR A 82 TYR A 87 A 3 VAL A 47 ? LEU A 51 ? VAL A 71 LEU A 75 B 1 GLU A 80 ? VAL A 82 ? GLU A 104 VAL A 106 B 2 LYS A 88 ? THR A 90 ? LYS A 112 THR A 114 C 1 LEU A 113 ? VAL A 116 ? LEU A 137 VAL A 140 C 2 SER A 254 ? MSE A 258 ? SER A 278 MSE A 282 C 3 ILE A 225 ? LEU A 230 ? ILE A 249 LEU A 254 C 4 ARG A 304 ? ARG A 310 ? ARG A 328 ARG A 334 C 5 GLN A 199 ? TYR A 205 ? GLN A 223 TYR A 229 C 6 ARG A 151 ? PHE A 155 ? ARG A 175 PHE A 179 D 1 ILE A 234 ? LYS A 239 ? ILE A 258 LYS A 263 D 2 ALA A 245 ? LEU A 250 ? ALA A 269 LEU A 274 E 1 PHE A 275 ? GLN A 279 ? PHE A 299 GLN A 303 E 2 LEU A 296 ? LYS A 300 ? LEU A 320 LYS A 324 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 23 ? N VAL A 47 O SER A 59 ? O SER A 83 A 2 3 O PHE A 60 ? O PHE A 84 N LEU A 51 ? N LEU A 75 B 1 2 N VAL A 81 ? N VAL A 105 O ILE A 89 ? O ILE A 113 C 1 2 N VAL A 116 ? N VAL A 140 O LEU A 255 ? O LEU A 279 C 2 3 O LEU A 256 ? O LEU A 280 N SER A 227 ? N SER A 251 C 3 4 N LEU A 230 ? N LEU A 254 O THR A 305 ? O THR A 329 C 4 5 O ARG A 304 ? O ARG A 328 N TYR A 205 ? N TYR A 229 C 5 6 O ILE A 202 ? O ILE A 226 N LYS A 153 ? N LYS A 177 D 1 2 N PHE A 238 ? N PHE A 262 O VAL A 246 ? O VAL A 270 E 1 2 N VAL A 278 ? N VAL A 302 O THR A 297 ? O THR A 321 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 401 ? 4 'BINDING SITE FOR RESIDUE ZN A 401' AC2 Software A MN 402 ? 4 'BINDING SITE FOR RESIDUE MN A 402' AC3 Software A AKG 403 ? 11 'BINDING SITE FOR RESIDUE AKG A 403' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 218 ? HIS A 242 . ? 1_555 ? 2 AC1 4 CYS A 317 ? CYS A 341 . ? 1_555 ? 3 AC1 4 CYS A 319 ? CYS A 343 . ? 1_555 ? 4 AC1 4 CYS A 325 ? CYS A 349 . ? 1_555 ? 5 AC2 4 HIS A 214 ? HIS A 238 . ? 1_555 ? 6 AC2 4 ASP A 216 ? ASP A 240 . ? 1_555 ? 7 AC2 4 HIS A 268 ? HIS A 292 . ? 1_555 ? 8 AC2 4 AKG D . ? AKG A 403 . ? 1_555 ? 9 AC3 11 ASN A 203 ? ASN A 227 . ? 1_555 ? 10 AC3 11 TYR A 205 ? TYR A 229 . ? 1_555 ? 11 AC3 11 HIS A 214 ? HIS A 238 . ? 1_555 ? 12 AC3 11 SER A 227 ? SER A 251 . ? 1_555 ? 13 AC3 11 MSE A 236 ? MSE A 260 . ? 1_555 ? 14 AC3 11 HIS A 268 ? HIS A 292 . ? 1_555 ? 15 AC3 11 ARG A 304 ? ARG A 328 . ? 1_555 ? 16 AC3 11 SER A 306 ? SER A 330 . ? 1_555 ? 17 AC3 11 THR A 308 ? THR A 332 . ? 1_555 ? 18 AC3 11 ARG A 310 ? ARG A 334 . ? 1_555 ? 19 AC3 11 MN C . ? MN A 402 . ? 1_555 ? # _database_PDB_matrix.entry_id 3THP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3THP _atom_sites.fract_transf_matrix[1][1] 0.014646 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012244 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006910 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O S SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 25 ? ? ? A . n A 1 2 LYS 2 26 ? ? ? A . n A 1 3 HIS 3 27 ? ? ? A . n A 1 4 THR 4 28 28 THR THR A . n A 1 5 LEU 5 29 29 LEU LEU A . n A 1 6 LEU 6 30 30 LEU LEU A . n A 1 7 ARG 7 31 31 ARG ARG A . n A 1 8 HIS 8 32 32 HIS HIS A . n A 1 9 GLU 9 33 33 GLU GLU A . n A 1 10 GLY 10 34 34 GLY GLY A . n A 1 11 ILE 11 35 35 ILE ILE A . n A 1 12 GLU 12 36 36 GLU GLU A . n A 1 13 THR 13 37 37 THR THR A . n A 1 14 VAL 14 38 38 VAL VAL A . n A 1 15 SER 15 39 39 SER SER A . n A 1 16 TYR 16 40 40 TYR TYR A . n A 1 17 ALA 17 41 41 ALA ALA A . n A 1 18 THR 18 42 42 THR THR A . n A 1 19 GLN 19 43 43 GLN GLN A . n A 1 20 SER 20 44 44 SER SER A . n A 1 21 LEU 21 45 45 LEU LEU A . n A 1 22 VAL 22 46 46 VAL VAL A . n A 1 23 VAL 23 47 47 VAL VAL A . n A 1 24 ALA 24 48 48 ALA ALA A . n A 1 25 ASN 25 49 49 ASN ASN A . n A 1 26 GLY 26 50 50 GLY GLY A . n A 1 27 GLY 27 51 51 GLY GLY A . n A 1 28 LEU 28 52 52 LEU LEU A . n A 1 29 GLY 29 53 53 GLY GLY A . n A 1 30 ASN 30 54 54 ASN ASN A . n A 1 31 GLY 31 55 55 GLY GLY A . n A 1 32 VAL 32 56 56 VAL VAL A . n A 1 33 SER 33 57 57 SER SER A . n A 1 34 ARG 34 58 58 ARG ARG A . n A 1 35 ASN 35 59 59 ASN ASN A . n A 1 36 GLN 36 60 60 GLN GLN A . n A 1 37 LEU 37 61 61 LEU LEU A . n A 1 38 LEU 38 62 62 LEU LEU A . n A 1 39 PRO 39 63 63 PRO PRO A . n A 1 40 VAL 40 64 64 VAL VAL A . n A 1 41 LEU 41 65 65 LEU LEU A . n A 1 42 GLU 42 66 66 GLU GLU A . n A 1 43 LYS 43 67 67 LYS LYS A . n A 1 44 CYS 44 68 68 CYS CYS A . n A 1 45 GLY 45 69 69 GLY GLY A . n A 1 46 LEU 46 70 70 LEU LEU A . n A 1 47 VAL 47 71 71 VAL VAL A . n A 1 48 ASP 48 72 72 ASP ASP A . n A 1 49 ALA 49 73 73 ALA ALA A . n A 1 50 LEU 50 74 74 LEU LEU A . n A 1 51 LEU 51 75 75 LEU LEU A . n A 1 52 MSE 52 76 76 MSE MSE A . n A 1 53 PRO 53 77 77 PRO PRO A . n A 1 54 PRO 54 78 78 PRO PRO A . n A 1 55 ASN 55 79 79 ASN ASN A . n A 1 56 LYS 56 80 80 LYS LYS A . n A 1 57 PRO 57 81 81 PRO PRO A . n A 1 58 TYR 58 82 82 TYR TYR A . n A 1 59 SER 59 83 83 SER SER A . n A 1 60 PHE 60 84 84 PHE PHE A . n A 1 61 ALA 61 85 85 ALA ALA A . n A 1 62 ARG 62 86 86 ARG ARG A . n A 1 63 TYR 63 87 87 TYR TYR A . n A 1 64 ARG 64 88 88 ARG ARG A . n A 1 65 THR 65 89 89 THR THR A . n A 1 66 THR 66 90 90 THR THR A . n A 1 67 GLU 67 91 91 GLU GLU A . n A 1 68 GLU 68 92 92 GLU GLU A . n A 1 69 SER 69 93 93 SER SER A . n A 1 70 LYS 70 94 94 LYS LYS A . n A 1 71 ARG 71 95 95 ARG ARG A . n A 1 72 ALA 72 96 96 ALA ALA A . n A 1 73 TYR 73 97 97 TYR TYR A . n A 1 74 VAL 74 98 98 VAL VAL A . n A 1 75 THR 75 99 99 THR THR A . n A 1 76 LEU 76 100 100 LEU LEU A . n A 1 77 ASN 77 101 101 ASN ASN A . n A 1 78 GLY 78 102 102 GLY GLY A . n A 1 79 LYS 79 103 103 LYS LYS A . n A 1 80 GLU 80 104 104 GLU GLU A . n A 1 81 VAL 81 105 105 VAL VAL A . n A 1 82 VAL 82 106 106 VAL VAL A . n A 1 83 ASP 83 107 107 ASP ASP A . n A 1 84 ASP 84 108 108 ASP ASP A . n A 1 85 LEU 85 109 109 LEU LEU A . n A 1 86 GLY 86 110 110 GLY GLY A . n A 1 87 GLN 87 111 111 GLN GLN A . n A 1 88 LYS 88 112 112 LYS LYS A . n A 1 89 ILE 89 113 113 ILE ILE A . n A 1 90 THR 90 114 114 THR THR A . n A 1 91 LEU 91 115 115 LEU LEU A . n A 1 92 TYR 92 116 116 TYR TYR A . n A 1 93 LEU 93 117 117 LEU LEU A . n A 1 94 ASN 94 118 118 ASN ASN A . n A 1 95 PHE 95 119 119 PHE PHE A . n A 1 96 VAL 96 120 120 VAL VAL A . n A 1 97 GLU 97 121 121 GLU GLU A . n A 1 98 LYS 98 122 122 LYS LYS A . n A 1 99 VAL 99 123 123 VAL VAL A . n A 1 100 GLN 100 124 124 GLN GLN A . n A 1 101 TRP 101 125 125 TRP TRP A . n A 1 102 LYS 102 126 126 LYS LYS A . n A 1 103 GLU 103 127 127 GLU GLU A . n A 1 104 LEU 104 128 128 LEU LEU A . n A 1 105 ARG 105 129 129 ARG ARG A . n A 1 106 PRO 106 130 130 PRO PRO A . n A 1 107 GLN 107 131 131 GLN GLN A . n A 1 108 ALA 108 132 132 ALA ALA A . n A 1 109 LEU 109 133 133 LEU LEU A . n A 1 110 PRO 110 134 134 PRO PRO A . n A 1 111 PRO 111 135 135 PRO PRO A . n A 1 112 GLY 112 136 136 GLY GLY A . n A 1 113 LEU 113 137 137 LEU LEU A . n A 1 114 MSE 114 138 138 MSE MSE A . n A 1 115 VAL 115 139 139 VAL VAL A . n A 1 116 VAL 116 140 140 VAL VAL A . n A 1 117 GLU 117 141 141 GLU GLU A . n A 1 118 GLU 118 142 142 GLU GLU A . n A 1 119 ILE 119 143 143 ILE ILE A . n A 1 120 ILE 120 144 144 ILE ILE A . n A 1 121 SER 121 145 145 SER SER A . n A 1 122 SER 122 146 146 SER SER A . n A 1 123 GLU 123 147 147 GLU GLU A . n A 1 124 GLU 124 148 148 GLU GLU A . n A 1 125 GLU 125 149 149 GLU GLU A . n A 1 126 LYS 126 150 150 LYS LYS A . n A 1 127 MSE 127 151 151 MSE MSE A . n A 1 128 LEU 128 152 152 LEU LEU A . n A 1 129 LEU 129 153 153 LEU LEU A . n A 1 130 GLU 130 154 154 GLU GLU A . n A 1 131 SER 131 155 155 SER SER A . n A 1 132 VAL 132 156 156 VAL VAL A . n A 1 133 ASP 133 157 ? ? ? A . n A 1 134 TRP 134 158 ? ? ? A . n A 1 135 THR 135 159 ? ? ? A . n A 1 136 GLU 136 160 ? ? ? A . n A 1 137 ASP 137 161 ? ? ? A . n A 1 138 THR 138 162 ? ? ? A . n A 1 139 ASP 139 163 ? ? ? A . n A 1 140 ASN 140 164 ? ? ? A . n A 1 141 GLN 141 165 ? ? ? A . n A 1 142 ASN 142 166 ? ? ? A . n A 1 143 SER 143 167 ? ? ? A . n A 1 144 GLN 144 168 ? ? ? A . n A 1 145 LYS 145 169 ? ? ? A . n A 1 146 SER 146 170 ? ? ? A . n A 1 147 LEU 147 171 ? ? ? A . n A 1 148 LYS 148 172 ? ? ? A . n A 1 149 HIS 149 173 ? ? ? A . n A 1 150 ARG 150 174 174 ARG ARG A . n A 1 151 ARG 151 175 175 ARG ARG A . n A 1 152 VAL 152 176 176 VAL VAL A . n A 1 153 LYS 153 177 177 LYS LYS A . n A 1 154 HIS 154 178 178 HIS HIS A . n A 1 155 PHE 155 179 179 PHE PHE A . n A 1 156 GLY 156 180 180 GLY GLY A . n A 1 157 TYR 157 181 181 TYR TYR A . n A 1 158 GLU 158 182 ? ? ? A . n A 1 159 PHE 159 183 ? ? ? A . n A 1 160 HIS 160 184 ? ? ? A . n A 1 161 TYR 161 185 ? ? ? A . n A 1 162 GLU 162 186 ? ? ? A . n A 1 163 ASN 163 187 ? ? ? A . n A 1 164 ASN 164 188 ? ? ? A . n A 1 165 ASN 165 189 ? ? ? A . n A 1 166 VAL 166 190 ? ? ? A . n A 1 167 ASP 167 191 ? ? ? A . n A 1 168 LYS 168 192 192 LYS LYS A . n A 1 169 ASP 169 193 193 ASP ASP A . n A 1 170 LYS 170 194 194 LYS LYS A . n A 1 171 PRO 171 195 195 PRO PRO A . n A 1 172 LEU 172 196 196 LEU LEU A . n A 1 173 SER 173 197 197 SER SER A . n A 1 174 GLY 174 198 198 GLY GLY A . n A 1 175 GLY 175 199 199 GLY GLY A . n A 1 176 LEU 176 200 200 LEU LEU A . n A 1 177 PRO 177 201 201 PRO PRO A . n A 1 178 ASP 178 202 202 ASP ASP A . n A 1 179 ILE 179 203 203 ILE ILE A . n A 1 180 CYS 180 204 204 CYS CYS A . n A 1 181 GLU 181 205 205 GLU GLU A . n A 1 182 SER 182 206 206 SER SER A . n A 1 183 PHE 183 207 207 PHE PHE A . n A 1 184 LEU 184 208 208 LEU LEU A . n A 1 185 GLU 185 209 209 GLU GLU A . n A 1 186 LYS 186 210 210 LYS LYS A . n A 1 187 TRP 187 211 211 TRP TRP A . n A 1 188 LEU 188 212 212 LEU LEU A . n A 1 189 ARG 189 213 213 ARG ARG A . n A 1 190 LYS 190 214 214 LYS LYS A . n A 1 191 GLY 191 215 215 GLY GLY A . n A 1 192 TYR 192 216 216 TYR TYR A . n A 1 193 ILE 193 217 217 ILE ILE A . n A 1 194 LYS 194 218 218 LYS LYS A . n A 1 195 HIS 195 219 219 HIS HIS A . n A 1 196 LYS 196 220 220 LYS LYS A . n A 1 197 PRO 197 221 221 PRO PRO A . n A 1 198 ASP 198 222 222 ASP ASP A . n A 1 199 GLN 199 223 223 GLN GLN A . n A 1 200 MSE 200 224 224 MSE MSE A . n A 1 201 THR 201 225 225 THR THR A . n A 1 202 ILE 202 226 226 ILE ILE A . n A 1 203 ASN 203 227 227 ASN ASN A . n A 1 204 GLN 204 228 228 GLN GLN A . n A 1 205 TYR 205 229 229 TYR TYR A . n A 1 206 GLU 206 230 230 GLU GLU A . n A 1 207 PRO 207 231 231 PRO PRO A . n A 1 208 GLY 208 232 232 GLY GLY A . n A 1 209 GLN 209 233 233 GLN GLN A . n A 1 210 GLY 210 234 234 GLY GLY A . n A 1 211 ILE 211 235 235 ILE ILE A . n A 1 212 PRO 212 236 236 PRO PRO A . n A 1 213 ALA 213 237 237 ALA ALA A . n A 1 214 HIS 214 238 238 HIS HIS A . n A 1 215 ILE 215 239 239 ILE ILE A . n A 1 216 ASP 216 240 240 ASP ASP A . n A 1 217 THR 217 241 241 THR THR A . n A 1 218 HIS 218 242 242 HIS HIS A . n A 1 219 SER 219 243 243 SER SER A . n A 1 220 ALA 220 244 244 ALA ALA A . n A 1 221 PHE 221 245 245 PHE PHE A . n A 1 222 GLU 222 246 246 GLU GLU A . n A 1 223 ASP 223 247 247 ASP ASP A . n A 1 224 GLU 224 248 248 GLU GLU A . n A 1 225 ILE 225 249 249 ILE ILE A . n A 1 226 VAL 226 250 250 VAL VAL A . n A 1 227 SER 227 251 251 SER SER A . n A 1 228 LEU 228 252 252 LEU LEU A . n A 1 229 SER 229 253 253 SER SER A . n A 1 230 LEU 230 254 254 LEU LEU A . n A 1 231 GLY 231 255 255 GLY GLY A . n A 1 232 SER 232 256 256 SER SER A . n A 1 233 GLU 233 257 257 GLU GLU A . n A 1 234 ILE 234 258 258 ILE ILE A . n A 1 235 VAL 235 259 259 VAL VAL A . n A 1 236 MSE 236 260 260 MSE MSE A . n A 1 237 ASP 237 261 261 ASP ASP A . n A 1 238 PHE 238 262 262 PHE PHE A . n A 1 239 LYS 239 263 263 LYS LYS A . n A 1 240 HIS 240 264 264 HIS HIS A . n A 1 241 PRO 241 265 265 PRO PRO A . n A 1 242 ASP 242 266 266 ASP ASP A . n A 1 243 GLY 243 267 267 GLY GLY A . n A 1 244 ILE 244 268 268 ILE ILE A . n A 1 245 ALA 245 269 269 ALA ALA A . n A 1 246 VAL 246 270 270 VAL VAL A . n A 1 247 PRO 247 271 271 PRO PRO A . n A 1 248 VAL 248 272 272 VAL VAL A . n A 1 249 MSE 249 273 273 MSE MSE A . n A 1 250 LEU 250 274 274 LEU LEU A . n A 1 251 PRO 251 275 275 PRO PRO A . n A 1 252 ARG 252 276 276 ARG ARG A . n A 1 253 ARG 253 277 277 ARG ARG A . n A 1 254 SER 254 278 278 SER SER A . n A 1 255 LEU 255 279 279 LEU LEU A . n A 1 256 LEU 256 280 280 LEU LEU A . n A 1 257 VAL 257 281 281 VAL VAL A . n A 1 258 MSE 258 282 282 MSE MSE A . n A 1 259 THR 259 283 283 THR THR A . n A 1 260 GLY 260 284 284 GLY GLY A . n A 1 261 GLU 261 285 285 GLU GLU A . n A 1 262 SER 262 286 286 SER SER A . n A 1 263 ARG 263 287 287 ARG ARG A . n A 1 264 TYR 264 288 288 TYR TYR A . n A 1 265 LEU 265 289 289 LEU LEU A . n A 1 266 TRP 266 290 290 TRP TRP A . n A 1 267 THR 267 291 291 THR THR A . n A 1 268 HIS 268 292 292 HIS HIS A . n A 1 269 GLY 269 293 293 GLY GLY A . n A 1 270 ILE 270 294 294 ILE ILE A . n A 1 271 THR 271 295 295 THR THR A . n A 1 272 CYS 272 296 296 CYS CYS A . n A 1 273 ARG 273 297 297 ARG ARG A . n A 1 274 LYS 274 298 298 LYS LYS A . n A 1 275 PHE 275 299 299 PHE PHE A . n A 1 276 ASP 276 300 300 ASP ASP A . n A 1 277 THR 277 301 301 THR THR A . n A 1 278 VAL 278 302 302 VAL VAL A . n A 1 279 GLN 279 303 303 GLN GLN A . n A 1 280 ALA 280 304 304 ALA ALA A . n A 1 281 SER 281 305 305 SER SER A . n A 1 282 GLU 282 306 306 GLU GLU A . n A 1 283 SER 283 307 ? ? ? A . n A 1 284 LEU 284 308 ? ? ? A . n A 1 285 LYS 285 309 309 LYS LYS A . n A 1 286 SER 286 310 310 SER SER A . n A 1 287 GLY 287 311 311 GLY GLY A . n A 1 288 ILE 288 312 312 ILE ILE A . n A 1 289 ILE 289 313 313 ILE ILE A . n A 1 290 THR 290 314 314 THR THR A . n A 1 291 SER 291 315 315 SER SER A . n A 1 292 ASP 292 316 316 ASP ASP A . n A 1 293 VAL 293 317 317 VAL VAL A . n A 1 294 GLY 294 318 318 GLY GLY A . n A 1 295 ASP 295 319 319 ASP ASP A . n A 1 296 LEU 296 320 320 LEU LEU A . n A 1 297 THR 297 321 321 THR THR A . n A 1 298 LEU 298 322 322 LEU LEU A . n A 1 299 SER 299 323 323 SER SER A . n A 1 300 LYS 300 324 324 LYS LYS A . n A 1 301 ARG 301 325 325 ARG ARG A . n A 1 302 GLY 302 326 326 GLY GLY A . n A 1 303 LEU 303 327 327 LEU LEU A . n A 1 304 ARG 304 328 328 ARG ARG A . n A 1 305 THR 305 329 329 THR THR A . n A 1 306 SER 306 330 330 SER SER A . n A 1 307 PHE 307 331 331 PHE PHE A . n A 1 308 THR 308 332 332 THR THR A . n A 1 309 PHE 309 333 333 PHE PHE A . n A 1 310 ARG 310 334 334 ARG ARG A . n A 1 311 LYS 311 335 335 LYS LYS A . n A 1 312 VAL 312 336 336 VAL VAL A . n A 1 313 ARG 313 337 337 ARG ARG A . n A 1 314 GLN 314 338 338 GLN GLN A . n A 1 315 THR 315 339 339 THR THR A . n A 1 316 PRO 316 340 340 PRO PRO A . n A 1 317 CYS 317 341 341 CYS CYS A . n A 1 318 ASN 318 342 342 ASN ASN A . n A 1 319 CYS 319 343 343 CYS CYS A . n A 1 320 SER 320 344 344 SER SER A . n A 1 321 TYR 321 345 345 TYR TYR A . n A 1 322 PRO 322 346 346 PRO PRO A . n A 1 323 LEU 323 347 347 LEU LEU A . n A 1 324 VAL 324 348 348 VAL VAL A . n A 1 325 CYS 325 349 349 CYS CYS A . n A 1 326 ASP 326 350 350 ASP ASP A . n A 1 327 SER 327 351 351 SER SER A . n A 1 328 GLN 328 352 352 GLN GLN A . n A 1 329 ARG 329 353 353 ARG ARG A . n A 1 330 LYS 330 354 354 LYS LYS A . n A 1 331 GLU 331 355 355 GLU GLU A . n A 1 332 ASN 332 356 356 ASN ASN A . n A 1 333 LEU 333 357 357 LEU LEU A . n A 1 334 TYR 334 358 358 TYR TYR A . n A 1 335 PHE 335 359 359 PHE PHE A . n A 1 336 GLN 336 360 360 GLN GLN A . n A 1 337 GLY 337 361 ? ? ? A . n A 1 338 LEU 338 362 ? ? ? A . n A 1 339 GLU 339 363 ? ? ? A . n A 1 340 HIS 340 364 ? ? ? A . n A 1 341 HIS 341 365 ? ? ? A . n A 1 342 HIS 342 366 ? ? ? A . n A 1 343 HIS 343 367 ? ? ? A . n A 1 344 HIS 344 368 ? ? ? A . n A 1 345 HIS 345 369 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 401 401 ZN ZN A . C 3 MN 1 402 402 MN MN A . D 4 AKG 1 403 403 AKG AKG A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 52 A MSE 76 ? MET SELENOMETHIONINE 2 A MSE 114 A MSE 138 ? MET SELENOMETHIONINE 3 A MSE 127 A MSE 151 ? MET SELENOMETHIONINE 4 A MSE 200 A MSE 224 ? MET SELENOMETHIONINE 5 A MSE 236 A MSE 260 ? MET SELENOMETHIONINE 6 A MSE 249 A MSE 273 ? MET SELENOMETHIONINE 7 A MSE 258 A MSE 282 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA tetrameric 4 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2,3,4 A,B,C,D 3 1,4 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 10350 ? 2 MORE -55 ? 2 'SSA (A^2)' 57380 ? 3 'ABSA (A^2)' 3150 ? 3 MORE -20 ? 3 'SSA (A^2)' 30710 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 68.2760000000 0.0000000000 -1.0000000000 0.0000000000 81.6750000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 68.2760000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 81.6750000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 214 ? A HIS 238 ? 1_555 MN ? C MN . ? A MN 402 ? 1_555 OD2 ? A ASP 216 ? A ASP 240 ? 1_555 86.7 ? 2 NE2 ? A HIS 214 ? A HIS 238 ? 1_555 MN ? C MN . ? A MN 402 ? 1_555 NE2 ? A HIS 268 ? A HIS 292 ? 1_555 101.9 ? 3 OD2 ? A ASP 216 ? A ASP 240 ? 1_555 MN ? C MN . ? A MN 402 ? 1_555 NE2 ? A HIS 268 ? A HIS 292 ? 1_555 100.2 ? 4 NE2 ? A HIS 214 ? A HIS 238 ? 1_555 MN ? C MN . ? A MN 402 ? 1_555 O2 ? D AKG . ? A AKG 403 ? 1_555 82.5 ? 5 OD2 ? A ASP 216 ? A ASP 240 ? 1_555 MN ? C MN . ? A MN 402 ? 1_555 O2 ? D AKG . ? A AKG 403 ? 1_555 107.0 ? 6 NE2 ? A HIS 268 ? A HIS 292 ? 1_555 MN ? C MN . ? A MN 402 ? 1_555 O2 ? D AKG . ? A AKG 403 ? 1_555 152.7 ? 7 ND1 ? A HIS 218 ? A HIS 242 ? 1_555 ZN ? B ZN . ? A ZN 401 ? 1_555 SG ? A CYS 317 ? A CYS 341 ? 1_555 145.8 ? 8 ND1 ? A HIS 218 ? A HIS 242 ? 1_555 ZN ? B ZN . ? A ZN 401 ? 1_555 SG ? A CYS 319 ? A CYS 343 ? 1_555 107.2 ? 9 SG ? A CYS 317 ? A CYS 341 ? 1_555 ZN ? B ZN . ? A ZN 401 ? 1_555 SG ? A CYS 319 ? A CYS 343 ? 1_555 86.0 ? 10 ND1 ? A HIS 218 ? A HIS 242 ? 1_555 ZN ? B ZN . ? A ZN 401 ? 1_555 SG ? A CYS 325 ? A CYS 349 ? 1_555 96.5 ? 11 SG ? A CYS 317 ? A CYS 341 ? 1_555 ZN ? B ZN . ? A ZN 401 ? 1_555 SG ? A CYS 325 ? A CYS 349 ? 1_555 109.0 ? 12 SG ? A CYS 319 ? A CYS 343 ? 1_555 ZN ? B ZN . ? A ZN 401 ? 1_555 SG ? A CYS 325 ? A CYS 349 ? 1_555 109.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-11-02 2 'Structure model' 1 1 2012-10-10 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2023-09-13 5 'Structure model' 1 4 2023-12-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_ref_seq_dif 9 4 'Structure model' struct_site 10 5 'Structure model' chem_comp_atom 11 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.value' 21 4 'Structure model' '_struct_conn.pdbx_dist_value' 22 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 4 'Structure model' '_struct_ref_seq_dif.details' 35 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 38 5 'Structure model' '_chem_comp_atom.atom_id' 39 5 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHASER phasing . ? 2 CNS refinement '1.2 & Xtalview' ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 29 ? ? -46.33 -17.97 2 1 LEU A 30 ? ? -166.96 -1.75 3 1 LYS A 214 ? ? -75.28 -80.95 4 1 ASP A 222 ? ? -153.34 -2.77 5 1 PRO A 231 ? ? -41.88 91.93 6 1 ALA A 244 ? ? -106.39 -81.94 7 1 GLU A 246 ? ? -54.35 -169.15 8 1 ASP A 247 ? ? -69.27 -77.32 9 1 ARG A 297 ? ? 172.33 166.64 10 1 ALA A 304 ? ? -75.55 33.46 11 1 SER A 305 ? ? -134.58 -121.39 12 1 ASN A 342 ? ? -145.05 41.73 13 1 CYS A 343 ? ? -58.46 -173.74 14 1 ASN A 356 ? ? -169.18 117.31 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 25 ? A ALA 1 2 1 Y 1 A LYS 26 ? A LYS 2 3 1 Y 1 A HIS 27 ? A HIS 3 4 1 Y 1 A ASP 157 ? A ASP 133 5 1 Y 1 A TRP 158 ? A TRP 134 6 1 Y 1 A THR 159 ? A THR 135 7 1 Y 1 A GLU 160 ? A GLU 136 8 1 Y 1 A ASP 161 ? A ASP 137 9 1 Y 1 A THR 162 ? A THR 138 10 1 Y 1 A ASP 163 ? A ASP 139 11 1 Y 1 A ASN 164 ? A ASN 140 12 1 Y 1 A GLN 165 ? A GLN 141 13 1 Y 1 A ASN 166 ? A ASN 142 14 1 Y 1 A SER 167 ? A SER 143 15 1 Y 1 A GLN 168 ? A GLN 144 16 1 Y 1 A LYS 169 ? A LYS 145 17 1 Y 1 A SER 170 ? A SER 146 18 1 Y 1 A LEU 171 ? A LEU 147 19 1 Y 1 A LYS 172 ? A LYS 148 20 1 Y 1 A HIS 173 ? A HIS 149 21 1 Y 1 A GLU 182 ? A GLU 158 22 1 Y 1 A PHE 183 ? A PHE 159 23 1 Y 1 A HIS 184 ? A HIS 160 24 1 Y 1 A TYR 185 ? A TYR 161 25 1 Y 1 A GLU 186 ? A GLU 162 26 1 Y 1 A ASN 187 ? A ASN 163 27 1 Y 1 A ASN 188 ? A ASN 164 28 1 Y 1 A ASN 189 ? A ASN 165 29 1 Y 1 A VAL 190 ? A VAL 166 30 1 Y 1 A ASP 191 ? A ASP 167 31 1 Y 1 A SER 307 ? A SER 283 32 1 Y 1 A LEU 308 ? A LEU 284 33 1 Y 1 A GLY 361 ? A GLY 337 34 1 Y 1 A LEU 362 ? A LEU 338 35 1 Y 1 A GLU 363 ? A GLU 339 36 1 Y 1 A HIS 364 ? A HIS 340 37 1 Y 1 A HIS 365 ? A HIS 341 38 1 Y 1 A HIS 366 ? A HIS 342 39 1 Y 1 A HIS 367 ? A HIS 343 40 1 Y 1 A HIS 368 ? A HIS 344 41 1 Y 1 A HIS 369 ? A HIS 345 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AKG C1 C N N 1 AKG O1 O N N 2 AKG O2 O N N 3 AKG C2 C N N 4 AKG O5 O N N 5 AKG C3 C N N 6 AKG C4 C N N 7 AKG C5 C N N 8 AKG O3 O N N 9 AKG O4 O N N 10 AKG HO2 H N N 11 AKG H31 H N N 12 AKG H32 H N N 13 AKG H41 H N N 14 AKG H42 H N N 15 AKG HO4 H N N 16 ALA N N N N 17 ALA CA C N S 18 ALA C C N N 19 ALA O O N N 20 ALA CB C N N 21 ALA OXT O N N 22 ALA H H N N 23 ALA H2 H N N 24 ALA HA H N N 25 ALA HB1 H N N 26 ALA HB2 H N N 27 ALA HB3 H N N 28 ALA HXT H N N 29 ARG N N N N 30 ARG CA C N S 31 ARG C C N N 32 ARG O O N N 33 ARG CB C N N 34 ARG CG C N N 35 ARG CD C N N 36 ARG NE N N N 37 ARG CZ C N N 38 ARG NH1 N N N 39 ARG NH2 N N N 40 ARG OXT O N N 41 ARG H H N N 42 ARG H2 H N N 43 ARG HA H N N 44 ARG HB2 H N N 45 ARG HB3 H N N 46 ARG HG2 H N N 47 ARG HG3 H N N 48 ARG HD2 H N N 49 ARG HD3 H N N 50 ARG HE H N N 51 ARG HH11 H N N 52 ARG HH12 H N N 53 ARG HH21 H N N 54 ARG HH22 H N N 55 ARG HXT H N N 56 ASN N N N N 57 ASN CA C N S 58 ASN C C N N 59 ASN O O N N 60 ASN CB C N N 61 ASN CG C N N 62 ASN OD1 O N N 63 ASN ND2 N N N 64 ASN OXT O N N 65 ASN H H N N 66 ASN H2 H N N 67 ASN HA H N N 68 ASN HB2 H N N 69 ASN HB3 H N N 70 ASN HD21 H N N 71 ASN HD22 H N N 72 ASN HXT H N N 73 ASP N N N N 74 ASP CA C N S 75 ASP C C N N 76 ASP O O N N 77 ASP CB C N N 78 ASP CG C N N 79 ASP OD1 O N N 80 ASP OD2 O N N 81 ASP OXT O N N 82 ASP H H N N 83 ASP H2 H N N 84 ASP HA H N N 85 ASP HB2 H N N 86 ASP HB3 H N N 87 ASP HD2 H N N 88 ASP HXT H N N 89 CYS N N N N 90 CYS CA C N R 91 CYS C C N N 92 CYS O O N N 93 CYS CB C N N 94 CYS SG S N N 95 CYS OXT O N N 96 CYS H H N N 97 CYS H2 H N N 98 CYS HA H N N 99 CYS HB2 H N N 100 CYS HB3 H N N 101 CYS HG H N N 102 CYS HXT H N N 103 GLN N N N N 104 GLN CA C N S 105 GLN C C N N 106 GLN O O N N 107 GLN CB C N N 108 GLN CG C N N 109 GLN CD C N N 110 GLN OE1 O N N 111 GLN NE2 N N N 112 GLN OXT O N N 113 GLN H H N N 114 GLN H2 H N N 115 GLN HA H N N 116 GLN HB2 H N N 117 GLN HB3 H N N 118 GLN HG2 H N N 119 GLN HG3 H N N 120 GLN HE21 H N N 121 GLN HE22 H N N 122 GLN HXT H N N 123 GLU N N N N 124 GLU CA C N S 125 GLU C C N N 126 GLU O O N N 127 GLU CB C N N 128 GLU CG C N N 129 GLU CD C N N 130 GLU OE1 O N N 131 GLU OE2 O N N 132 GLU OXT O N N 133 GLU H H N N 134 GLU H2 H N N 135 GLU HA H N N 136 GLU HB2 H N N 137 GLU HB3 H N N 138 GLU HG2 H N N 139 GLU HG3 H N N 140 GLU HE2 H N N 141 GLU HXT H N N 142 GLY N N N N 143 GLY CA C N N 144 GLY C C N N 145 GLY O O N N 146 GLY OXT O N N 147 GLY H H N N 148 GLY H2 H N N 149 GLY HA2 H N N 150 GLY HA3 H N N 151 GLY HXT H N N 152 HIS N N N N 153 HIS CA C N S 154 HIS C C N N 155 HIS O O N N 156 HIS CB C N N 157 HIS CG C Y N 158 HIS ND1 N Y N 159 HIS CD2 C Y N 160 HIS CE1 C Y N 161 HIS NE2 N Y N 162 HIS OXT O N N 163 HIS H H N N 164 HIS H2 H N N 165 HIS HA H N N 166 HIS HB2 H N N 167 HIS HB3 H N N 168 HIS HD1 H N N 169 HIS HD2 H N N 170 HIS HE1 H N N 171 HIS HE2 H N N 172 HIS HXT H N N 173 ILE N N N N 174 ILE CA C N S 175 ILE C C N N 176 ILE O O N N 177 ILE CB C N S 178 ILE CG1 C N N 179 ILE CG2 C N N 180 ILE CD1 C N N 181 ILE OXT O N N 182 ILE H H N N 183 ILE H2 H N N 184 ILE HA H N N 185 ILE HB H N N 186 ILE HG12 H N N 187 ILE HG13 H N N 188 ILE HG21 H N N 189 ILE HG22 H N N 190 ILE HG23 H N N 191 ILE HD11 H N N 192 ILE HD12 H N N 193 ILE HD13 H N N 194 ILE HXT H N N 195 LEU N N N N 196 LEU CA C N S 197 LEU C C N N 198 LEU O O N N 199 LEU CB C N N 200 LEU CG C N N 201 LEU CD1 C N N 202 LEU CD2 C N N 203 LEU OXT O N N 204 LEU H H N N 205 LEU H2 H N N 206 LEU HA H N N 207 LEU HB2 H N N 208 LEU HB3 H N N 209 LEU HG H N N 210 LEU HD11 H N N 211 LEU HD12 H N N 212 LEU HD13 H N N 213 LEU HD21 H N N 214 LEU HD22 H N N 215 LEU HD23 H N N 216 LEU HXT H N N 217 LYS N N N N 218 LYS CA C N S 219 LYS C C N N 220 LYS O O N N 221 LYS CB C N N 222 LYS CG C N N 223 LYS CD C N N 224 LYS CE C N N 225 LYS NZ N N N 226 LYS OXT O N N 227 LYS H H N N 228 LYS H2 H N N 229 LYS HA H N N 230 LYS HB2 H N N 231 LYS HB3 H N N 232 LYS HG2 H N N 233 LYS HG3 H N N 234 LYS HD2 H N N 235 LYS HD3 H N N 236 LYS HE2 H N N 237 LYS HE3 H N N 238 LYS HZ1 H N N 239 LYS HZ2 H N N 240 LYS HZ3 H N N 241 LYS HXT H N N 242 MN MN MN N N 243 MSE N N N N 244 MSE CA C N S 245 MSE C C N N 246 MSE O O N N 247 MSE OXT O N N 248 MSE CB C N N 249 MSE CG C N N 250 MSE SE SE N N 251 MSE CE C N N 252 MSE H H N N 253 MSE H2 H N N 254 MSE HA H N N 255 MSE HXT H N N 256 MSE HB2 H N N 257 MSE HB3 H N N 258 MSE HG2 H N N 259 MSE HG3 H N N 260 MSE HE1 H N N 261 MSE HE2 H N N 262 MSE HE3 H N N 263 PHE N N N N 264 PHE CA C N S 265 PHE C C N N 266 PHE O O N N 267 PHE CB C N N 268 PHE CG C Y N 269 PHE CD1 C Y N 270 PHE CD2 C Y N 271 PHE CE1 C Y N 272 PHE CE2 C Y N 273 PHE CZ C Y N 274 PHE OXT O N N 275 PHE H H N N 276 PHE H2 H N N 277 PHE HA H N N 278 PHE HB2 H N N 279 PHE HB3 H N N 280 PHE HD1 H N N 281 PHE HD2 H N N 282 PHE HE1 H N N 283 PHE HE2 H N N 284 PHE HZ H N N 285 PHE HXT H N N 286 PRO N N N N 287 PRO CA C N S 288 PRO C C N N 289 PRO O O N N 290 PRO CB C N N 291 PRO CG C N N 292 PRO CD C N N 293 PRO OXT O N N 294 PRO H H N N 295 PRO HA H N N 296 PRO HB2 H N N 297 PRO HB3 H N N 298 PRO HG2 H N N 299 PRO HG3 H N N 300 PRO HD2 H N N 301 PRO HD3 H N N 302 PRO HXT H N N 303 SER N N N N 304 SER CA C N S 305 SER C C N N 306 SER O O N N 307 SER CB C N N 308 SER OG O N N 309 SER OXT O N N 310 SER H H N N 311 SER H2 H N N 312 SER HA H N N 313 SER HB2 H N N 314 SER HB3 H N N 315 SER HG H N N 316 SER HXT H N N 317 THR N N N N 318 THR CA C N S 319 THR C C N N 320 THR O O N N 321 THR CB C N R 322 THR OG1 O N N 323 THR CG2 C N N 324 THR OXT O N N 325 THR H H N N 326 THR H2 H N N 327 THR HA H N N 328 THR HB H N N 329 THR HG1 H N N 330 THR HG21 H N N 331 THR HG22 H N N 332 THR HG23 H N N 333 THR HXT H N N 334 TRP N N N N 335 TRP CA C N S 336 TRP C C N N 337 TRP O O N N 338 TRP CB C N N 339 TRP CG C Y N 340 TRP CD1 C Y N 341 TRP CD2 C Y N 342 TRP NE1 N Y N 343 TRP CE2 C Y N 344 TRP CE3 C Y N 345 TRP CZ2 C Y N 346 TRP CZ3 C Y N 347 TRP CH2 C Y N 348 TRP OXT O N N 349 TRP H H N N 350 TRP H2 H N N 351 TRP HA H N N 352 TRP HB2 H N N 353 TRP HB3 H N N 354 TRP HD1 H N N 355 TRP HE1 H N N 356 TRP HE3 H N N 357 TRP HZ2 H N N 358 TRP HZ3 H N N 359 TRP HH2 H N N 360 TRP HXT H N N 361 TYR N N N N 362 TYR CA C N S 363 TYR C C N N 364 TYR O O N N 365 TYR CB C N N 366 TYR CG C Y N 367 TYR CD1 C Y N 368 TYR CD2 C Y N 369 TYR CE1 C Y N 370 TYR CE2 C Y N 371 TYR CZ C Y N 372 TYR OH O N N 373 TYR OXT O N N 374 TYR H H N N 375 TYR H2 H N N 376 TYR HA H N N 377 TYR HB2 H N N 378 TYR HB3 H N N 379 TYR HD1 H N N 380 TYR HD2 H N N 381 TYR HE1 H N N 382 TYR HE2 H N N 383 TYR HH H N N 384 TYR HXT H N N 385 VAL N N N N 386 VAL CA C N S 387 VAL C C N N 388 VAL O O N N 389 VAL CB C N N 390 VAL CG1 C N N 391 VAL CG2 C N N 392 VAL OXT O N N 393 VAL H H N N 394 VAL H2 H N N 395 VAL HA H N N 396 VAL HB H N N 397 VAL HG11 H N N 398 VAL HG12 H N N 399 VAL HG13 H N N 400 VAL HG21 H N N 401 VAL HG22 H N N 402 VAL HG23 H N N 403 VAL HXT H N N 404 ZN ZN ZN N N 405 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AKG C1 O1 doub N N 1 AKG C1 O2 sing N N 2 AKG C1 C2 sing N N 3 AKG O2 HO2 sing N N 4 AKG C2 O5 doub N N 5 AKG C2 C3 sing N N 6 AKG C3 C4 sing N N 7 AKG C3 H31 sing N N 8 AKG C3 H32 sing N N 9 AKG C4 C5 sing N N 10 AKG C4 H41 sing N N 11 AKG C4 H42 sing N N 12 AKG C5 O3 doub N N 13 AKG C5 O4 sing N N 14 AKG O4 HO4 sing N N 15 ALA N CA sing N N 16 ALA N H sing N N 17 ALA N H2 sing N N 18 ALA CA C sing N N 19 ALA CA CB sing N N 20 ALA CA HA sing N N 21 ALA C O doub N N 22 ALA C OXT sing N N 23 ALA CB HB1 sing N N 24 ALA CB HB2 sing N N 25 ALA CB HB3 sing N N 26 ALA OXT HXT sing N N 27 ARG N CA sing N N 28 ARG N H sing N N 29 ARG N H2 sing N N 30 ARG CA C sing N N 31 ARG CA CB sing N N 32 ARG CA HA sing N N 33 ARG C O doub N N 34 ARG C OXT sing N N 35 ARG CB CG sing N N 36 ARG CB HB2 sing N N 37 ARG CB HB3 sing N N 38 ARG CG CD sing N N 39 ARG CG HG2 sing N N 40 ARG CG HG3 sing N N 41 ARG CD NE sing N N 42 ARG CD HD2 sing N N 43 ARG CD HD3 sing N N 44 ARG NE CZ sing N N 45 ARG NE HE sing N N 46 ARG CZ NH1 sing N N 47 ARG CZ NH2 doub N N 48 ARG NH1 HH11 sing N N 49 ARG NH1 HH12 sing N N 50 ARG NH2 HH21 sing N N 51 ARG NH2 HH22 sing N N 52 ARG OXT HXT sing N N 53 ASN N CA sing N N 54 ASN N H sing N N 55 ASN N H2 sing N N 56 ASN CA C sing N N 57 ASN CA CB sing N N 58 ASN CA HA sing N N 59 ASN C O doub N N 60 ASN C OXT sing N N 61 ASN CB CG sing N N 62 ASN CB HB2 sing N N 63 ASN CB HB3 sing N N 64 ASN CG OD1 doub N N 65 ASN CG ND2 sing N N 66 ASN ND2 HD21 sing N N 67 ASN ND2 HD22 sing N N 68 ASN OXT HXT sing N N 69 ASP N CA sing N N 70 ASP N H sing N N 71 ASP N H2 sing N N 72 ASP CA C sing N N 73 ASP CA CB sing N N 74 ASP CA HA sing N N 75 ASP C O doub N N 76 ASP C OXT sing N N 77 ASP CB CG sing N N 78 ASP CB HB2 sing N N 79 ASP CB HB3 sing N N 80 ASP CG OD1 doub N N 81 ASP CG OD2 sing N N 82 ASP OD2 HD2 sing N N 83 ASP OXT HXT sing N N 84 CYS N CA sing N N 85 CYS N H sing N N 86 CYS N H2 sing N N 87 CYS CA C sing N N 88 CYS CA CB sing N N 89 CYS CA HA sing N N 90 CYS C O doub N N 91 CYS C OXT sing N N 92 CYS CB SG sing N N 93 CYS CB HB2 sing N N 94 CYS CB HB3 sing N N 95 CYS SG HG sing N N 96 CYS OXT HXT sing N N 97 GLN N CA sing N N 98 GLN N H sing N N 99 GLN N H2 sing N N 100 GLN CA C sing N N 101 GLN CA CB sing N N 102 GLN CA HA sing N N 103 GLN C O doub N N 104 GLN C OXT sing N N 105 GLN CB CG sing N N 106 GLN CB HB2 sing N N 107 GLN CB HB3 sing N N 108 GLN CG CD sing N N 109 GLN CG HG2 sing N N 110 GLN CG HG3 sing N N 111 GLN CD OE1 doub N N 112 GLN CD NE2 sing N N 113 GLN NE2 HE21 sing N N 114 GLN NE2 HE22 sing N N 115 GLN OXT HXT sing N N 116 GLU N CA sing N N 117 GLU N H sing N N 118 GLU N H2 sing N N 119 GLU CA C sing N N 120 GLU CA CB sing N N 121 GLU CA HA sing N N 122 GLU C O doub N N 123 GLU C OXT sing N N 124 GLU CB CG sing N N 125 GLU CB HB2 sing N N 126 GLU CB HB3 sing N N 127 GLU CG CD sing N N 128 GLU CG HG2 sing N N 129 GLU CG HG3 sing N N 130 GLU CD OE1 doub N N 131 GLU CD OE2 sing N N 132 GLU OE2 HE2 sing N N 133 GLU OXT HXT sing N N 134 GLY N CA sing N N 135 GLY N H sing N N 136 GLY N H2 sing N N 137 GLY CA C sing N N 138 GLY CA HA2 sing N N 139 GLY CA HA3 sing N N 140 GLY C O doub N N 141 GLY C OXT sing N N 142 GLY OXT HXT sing N N 143 HIS N CA sing N N 144 HIS N H sing N N 145 HIS N H2 sing N N 146 HIS CA C sing N N 147 HIS CA CB sing N N 148 HIS CA HA sing N N 149 HIS C O doub N N 150 HIS C OXT sing N N 151 HIS CB CG sing N N 152 HIS CB HB2 sing N N 153 HIS CB HB3 sing N N 154 HIS CG ND1 sing Y N 155 HIS CG CD2 doub Y N 156 HIS ND1 CE1 doub Y N 157 HIS ND1 HD1 sing N N 158 HIS CD2 NE2 sing Y N 159 HIS CD2 HD2 sing N N 160 HIS CE1 NE2 sing Y N 161 HIS CE1 HE1 sing N N 162 HIS NE2 HE2 sing N N 163 HIS OXT HXT sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MSE N CA sing N N 231 MSE N H sing N N 232 MSE N H2 sing N N 233 MSE CA C sing N N 234 MSE CA CB sing N N 235 MSE CA HA sing N N 236 MSE C O doub N N 237 MSE C OXT sing N N 238 MSE OXT HXT sing N N 239 MSE CB CG sing N N 240 MSE CB HB2 sing N N 241 MSE CB HB3 sing N N 242 MSE CG SE sing N N 243 MSE CG HG2 sing N N 244 MSE CG HG3 sing N N 245 MSE SE CE sing N N 246 MSE CE HE1 sing N N 247 MSE CE HE2 sing N N 248 MSE CE HE3 sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TRP N CA sing N N 319 TRP N H sing N N 320 TRP N H2 sing N N 321 TRP CA C sing N N 322 TRP CA CB sing N N 323 TRP CA HA sing N N 324 TRP C O doub N N 325 TRP C OXT sing N N 326 TRP CB CG sing N N 327 TRP CB HB2 sing N N 328 TRP CB HB3 sing N N 329 TRP CG CD1 doub Y N 330 TRP CG CD2 sing Y N 331 TRP CD1 NE1 sing Y N 332 TRP CD1 HD1 sing N N 333 TRP CD2 CE2 doub Y N 334 TRP CD2 CE3 sing Y N 335 TRP NE1 CE2 sing Y N 336 TRP NE1 HE1 sing N N 337 TRP CE2 CZ2 sing Y N 338 TRP CE3 CZ3 doub Y N 339 TRP CE3 HE3 sing N N 340 TRP CZ2 CH2 doub Y N 341 TRP CZ2 HZ2 sing N N 342 TRP CZ3 CH2 sing Y N 343 TRP CZ3 HZ3 sing N N 344 TRP CH2 HH2 sing N N 345 TRP OXT HXT sing N N 346 TYR N CA sing N N 347 TYR N H sing N N 348 TYR N H2 sing N N 349 TYR CA C sing N N 350 TYR CA CB sing N N 351 TYR CA HA sing N N 352 TYR C O doub N N 353 TYR C OXT sing N N 354 TYR CB CG sing N N 355 TYR CB HB2 sing N N 356 TYR CB HB3 sing N N 357 TYR CG CD1 doub Y N 358 TYR CG CD2 sing Y N 359 TYR CD1 CE1 sing Y N 360 TYR CD1 HD1 sing N N 361 TYR CD2 CE2 doub Y N 362 TYR CD2 HD2 sing N N 363 TYR CE1 CZ doub Y N 364 TYR CE1 HE1 sing N N 365 TYR CE2 CZ sing Y N 366 TYR CE2 HE2 sing N N 367 TYR CZ OH sing N N 368 TYR OH HH sing N N 369 TYR OXT HXT sing N N 370 VAL N CA sing N N 371 VAL N H sing N N 372 VAL N H2 sing N N 373 VAL CA C sing N N 374 VAL CA CB sing N N 375 VAL CA HA sing N N 376 VAL C O doub N N 377 VAL C OXT sing N N 378 VAL CB CG1 sing N N 379 VAL CB CG2 sing N N 380 VAL CB HB sing N N 381 VAL CG1 HG11 sing N N 382 VAL CG1 HG12 sing N N 383 VAL CG1 HG13 sing N N 384 VAL CG2 HG21 sing N N 385 VAL CG2 HG22 sing N N 386 VAL CG2 HG23 sing N N 387 VAL OXT HXT sing N N 388 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 'MANGANESE (II) ION' MN 4 '2-OXOGLUTARIC ACID' AKG # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 2CQ2 'PDB entry 2CQ2 for RRM domain, PDB entry 2FDI for AlkB domain.' 2 ? 'experimental model' PDB 2FDI 'PDB entry 2CQ2 for RRM domain, PDB entry 2FDI for AlkB domain.' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'light scattering' _pdbx_struct_assembly_auth_evidence.details ? #