HEADER RNA BINDING PROTEIN 20-AUG-11 3TIF TITLE DIMERIC STRUCTURE OF A POST-HYDROLYSIS STATE OF THE ATP-BINDING TITLE 2 CASSETTE MJ0796 BOUND TO ADP AND PI COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED ABC TRANSPORTER ATP-BINDING PROTEIN MJ0796; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII DSM 2661; SOURCE 3 ORGANISM_TAXID: 243232; SOURCE 4 STRAIN: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440; SOURCE 5 GENE: MJ0796; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS NUCLEOTIDE-BINDING DOMAIN, ABC TRANSPORTER ATPASE, ATP BINDING, RNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.B.SUTTON REVDAT 3 13-SEP-23 3TIF 1 REMARK SEQADV LINK REVDAT 2 07-MAR-18 3TIF 1 REMARK REVDAT 1 21-MAR-12 3TIF 0 JRNL AUTH M.E.ZOGHBI,K.L.FUSON,R.B.SUTTON,G.A.ALTENBERG JRNL TITL KINETICS OF THE ASSOCIATION/DISSOCIATION CYCLE OF AN JRNL TITL 2 ATP-BINDING CASSETTE NUCLEOTIDE-BINDING DOMAIN. JRNL REF J.BIOL.CHEM. V. 287 4157 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22158619 JRNL DOI 10.1074/JBC.M111.318378 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 46819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.800 REMARK 3 FREE R VALUE TEST SET COUNT : 3651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.3942 - 5.3240 0.99 1783 148 0.1845 0.1745 REMARK 3 2 5.3240 - 4.2285 1.00 1719 142 0.1611 0.1844 REMARK 3 3 4.2285 - 3.6948 1.00 1693 141 0.1670 0.2071 REMARK 3 4 3.6948 - 3.3573 1.00 1686 138 0.1928 0.2420 REMARK 3 5 3.3573 - 3.1168 1.00 1687 140 0.2122 0.2274 REMARK 3 6 3.1168 - 2.9332 1.00 1666 138 0.2214 0.2891 REMARK 3 7 2.9332 - 2.7864 0.99 1662 136 0.2253 0.2441 REMARK 3 8 2.7864 - 2.6651 1.00 1671 137 0.2399 0.2596 REMARK 3 9 2.6651 - 2.5626 1.00 1668 139 0.2462 0.3002 REMARK 3 10 2.5626 - 2.4742 1.00 1659 136 0.2364 0.3071 REMARK 3 11 2.4742 - 2.3968 1.00 1661 136 0.2255 0.2668 REMARK 3 12 2.3968 - 2.3283 1.00 1668 138 0.2186 0.3090 REMARK 3 13 2.3283 - 2.2671 1.00 1658 137 0.2206 0.2461 REMARK 3 14 2.2671 - 2.2118 1.00 1661 135 0.2253 0.2821 REMARK 3 15 2.2118 - 2.1615 1.00 1665 132 0.2180 0.2658 REMARK 3 16 2.1615 - 2.1155 1.00 1650 146 0.2284 0.2828 REMARK 3 17 2.1155 - 2.0732 1.00 1638 151 0.2396 0.3050 REMARK 3 18 2.0732 - 2.0341 1.00 1634 143 0.2449 0.3000 REMARK 3 19 2.0341 - 1.9977 1.00 1672 131 0.2395 0.2825 REMARK 3 20 1.9977 - 1.9639 1.00 1625 134 0.2518 0.2677 REMARK 3 21 1.9639 - 1.9322 1.00 1659 153 0.2594 0.3404 REMARK 3 22 1.9322 - 1.9025 1.00 1633 133 0.2710 0.3360 REMARK 3 23 1.9025 - 1.8745 1.00 1668 137 0.2778 0.2780 REMARK 3 24 1.8745 - 1.8481 1.00 1637 134 0.2648 0.3452 REMARK 3 25 1.8481 - 1.8231 1.00 1597 182 0.2733 0.3184 REMARK 3 26 1.8231 - 1.7995 0.95 1548 134 0.2757 0.3066 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 45.31 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.77700 REMARK 3 B22 (A**2) : 0.35670 REMARK 3 B33 (A**2) : -5.13370 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3814 REMARK 3 ANGLE : 1.114 5137 REMARK 3 CHIRALITY : 0.112 579 REMARK 3 PLANARITY : 0.003 657 REMARK 3 DIHEDRAL : 12.297 1483 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TIF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-11; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : SSRL; ROTATING ANODE REMARK 200 BEAMLINE : BL7-1; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796; 1.5418 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL; MIRRORS REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; RIGAKU REMARK 200 SCREENMACHINE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46824 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.799 REMARK 200 RESOLUTION RANGE LOW (A) : 33.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 36.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.58000 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1L2T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG4000, 10% ISOPROPANOL, 0.1M REMARK 280 HEPES, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.61600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.61600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.32450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.17350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.32450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.17350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.61600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.32450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.17350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.61600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.32450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.17350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 80.64900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -58.61600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 320 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 231 REMARK 465 PHE A 232 REMARK 465 ASP A 233 REMARK 465 ASP A 234 REMARK 465 ARG A 235 REMARK 465 ASP B 1233 REMARK 465 ASP B 1234 REMARK 465 ARG B 1235 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 1222 O HOH B 170 1.92 REMARK 500 NZ LYS A 3 O HOH A 330 1.97 REMARK 500 OE1 GLU A 227 O HOH A 341 1.97 REMARK 500 NZ LYS A 12 O GLY A 14 2.02 REMARK 500 NH1 ARG A 225 O HOH A 341 2.06 REMARK 500 O HOH B 108 O HOH B 143 2.13 REMARK 500 NE ARG A 225 O HOH A 249 2.13 REMARK 500 O HOH B 158 O HOH B 199 2.15 REMARK 500 O HOH B 195 O HOH B 205 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 92 -48.37 78.71 REMARK 500 ARG A 113 -60.24 -131.71 REMARK 500 ASN B1066 -23.51 83.16 REMARK 500 PHE B1092 -51.13 76.24 REMARK 500 ASN B1163 58.40 37.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 238 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 45 OG REMARK 620 2 GLN A 90 OE1 77.7 REMARK 620 3 GLN A 171 OE1 124.9 68.5 REMARK 620 4 ADP A 236 O1B 79.9 130.4 154.2 REMARK 620 5 PI A 237 O3 125.6 91.0 97.8 67.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1237 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP B 1 O3B REMARK 620 2 HOH B 7 O 94.7 REMARK 620 3 HOH B 76 O 79.5 166.6 REMARK 620 4 SER B1045 OG 81.5 91.3 76.0 REMARK 620 5 GLN B1090 OE1 173.2 85.4 98.9 91.7 REMARK 620 6 PI B1236 O3 82.1 90.2 100.8 163.6 104.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PI B 1236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PI A 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 1600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 1601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 1602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 238 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L2T RELATED DB: PDB REMARK 900 ATP-BOUND DIMER OF THE MJ0796 NUCLEOTIDE-BINDING DOMAIN PROTEIN REMARK 900 WITH A MUTATION OF A RESIDUE ESSENTIAL FOR ATP HYDROLYSIS DBREF 3TIF A 1 235 UNP Q58206 Y796_METJA 1 235 DBREF 3TIF B 1001 1235 UNP Q58206 Y796_METJA 1 235 SEQADV 3TIF VAL A 2 UNP Q58206 ILE 2 ENGINEERED MUTATION SEQADV 3TIF GLN A 171 UNP Q58206 GLU 171 ENGINEERED MUTATION SEQADV 3TIF TRP A 174 UNP Q58206 GLY 174 ENGINEERED MUTATION SEQADV 3TIF VAL B 1002 UNP Q58206 ILE 2 ENGINEERED MUTATION SEQADV 3TIF GLN B 1171 UNP Q58206 GLU 171 ENGINEERED MUTATION SEQADV 3TIF TRP B 1174 UNP Q58206 GLY 174 ENGINEERED MUTATION SEQRES 1 A 235 MET VAL LYS LEU LYS ASN VAL THR LYS THR TYR LYS MET SEQRES 2 A 235 GLY GLU GLU ILE ILE TYR ALA LEU LYS ASN VAL ASN LEU SEQRES 3 A 235 ASN ILE LYS GLU GLY GLU PHE VAL SER ILE MET GLY PRO SEQRES 4 A 235 SER GLY SER GLY LYS SER THR MET LEU ASN ILE ILE GLY SEQRES 5 A 235 CYS LEU ASP LYS PRO THR GLU GLY GLU VAL TYR ILE ASP SEQRES 6 A 235 ASN ILE LYS THR ASN ASP LEU ASP ASP ASP GLU LEU THR SEQRES 7 A 235 LYS ILE ARG ARG ASP LYS ILE GLY PHE VAL PHE GLN GLN SEQRES 8 A 235 PHE ASN LEU ILE PRO LEU LEU THR ALA LEU GLU ASN VAL SEQRES 9 A 235 GLU LEU PRO LEU ILE PHE LYS TYR ARG GLY ALA MET SER SEQRES 10 A 235 GLY GLU GLU ARG ARG LYS ARG ALA LEU GLU CYS LEU LYS SEQRES 11 A 235 MET ALA GLU LEU GLU GLU ARG PHE ALA ASN HIS LYS PRO SEQRES 12 A 235 ASN GLN LEU SER GLY GLY GLN GLN GLN ARG VAL ALA ILE SEQRES 13 A 235 ALA ARG ALA LEU ALA ASN ASN PRO PRO ILE ILE LEU ALA SEQRES 14 A 235 ASP GLN PRO THR TRP ALA LEU ASP SER LYS THR GLY GLU SEQRES 15 A 235 LYS ILE MET GLN LEU LEU LYS LYS LEU ASN GLU GLU ASP SEQRES 16 A 235 GLY LYS THR VAL VAL VAL VAL THR HIS ASP ILE ASN VAL SEQRES 17 A 235 ALA ARG PHE GLY GLU ARG ILE ILE TYR LEU LYS ASP GLY SEQRES 18 A 235 GLU VAL GLU ARG GLU GLU LYS LEU ARG GLY PHE ASP ASP SEQRES 19 A 235 ARG SEQRES 1 B 235 MET VAL LYS LEU LYS ASN VAL THR LYS THR TYR LYS MET SEQRES 2 B 235 GLY GLU GLU ILE ILE TYR ALA LEU LYS ASN VAL ASN LEU SEQRES 3 B 235 ASN ILE LYS GLU GLY GLU PHE VAL SER ILE MET GLY PRO SEQRES 4 B 235 SER GLY SER GLY LYS SER THR MET LEU ASN ILE ILE GLY SEQRES 5 B 235 CYS LEU ASP LYS PRO THR GLU GLY GLU VAL TYR ILE ASP SEQRES 6 B 235 ASN ILE LYS THR ASN ASP LEU ASP ASP ASP GLU LEU THR SEQRES 7 B 235 LYS ILE ARG ARG ASP LYS ILE GLY PHE VAL PHE GLN GLN SEQRES 8 B 235 PHE ASN LEU ILE PRO LEU LEU THR ALA LEU GLU ASN VAL SEQRES 9 B 235 GLU LEU PRO LEU ILE PHE LYS TYR ARG GLY ALA MET SER SEQRES 10 B 235 GLY GLU GLU ARG ARG LYS ARG ALA LEU GLU CYS LEU LYS SEQRES 11 B 235 MET ALA GLU LEU GLU GLU ARG PHE ALA ASN HIS LYS PRO SEQRES 12 B 235 ASN GLN LEU SER GLY GLY GLN GLN GLN ARG VAL ALA ILE SEQRES 13 B 235 ALA ARG ALA LEU ALA ASN ASN PRO PRO ILE ILE LEU ALA SEQRES 14 B 235 ASP GLN PRO THR TRP ALA LEU ASP SER LYS THR GLY GLU SEQRES 15 B 235 LYS ILE MET GLN LEU LEU LYS LYS LEU ASN GLU GLU ASP SEQRES 16 B 235 GLY LYS THR VAL VAL VAL VAL THR HIS ASP ILE ASN VAL SEQRES 17 B 235 ALA ARG PHE GLY GLU ARG ILE ILE TYR LEU LYS ASP GLY SEQRES 18 B 235 GLU VAL GLU ARG GLU GLU LYS LEU ARG GLY PHE ASP ASP SEQRES 19 B 235 ARG HET ADP A 236 27 HET PI A 237 5 HET IPA A1600 4 HET IPA A1602 4 HET NA A 238 1 HET ADP B 1 31 HET PI B1236 5 HET IPA B1601 4 HET NA B1237 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM PI HYDROGENPHOSPHATE ION HETNAM IPA ISOPROPYL ALCOHOL HETNAM NA SODIUM ION HETSYN IPA 2-PROPANOL FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 PI 2(H O4 P 2-) FORMUL 5 IPA 3(C3 H8 O) FORMUL 7 NA 2(NA 1+) FORMUL 12 HOH *211(H2 O) HELIX 1 1 GLY A 43 GLY A 52 1 10 HELIX 2 2 ASP A 73 LYS A 84 1 12 HELIX 3 3 THR A 99 PHE A 110 1 12 HELIX 4 4 SER A 117 ALA A 132 1 16 HELIX 5 5 GLU A 135 ALA A 139 5 5 HELIX 6 6 LYS A 142 LEU A 146 5 5 HELIX 7 7 SER A 147 ALA A 161 1 15 HELIX 8 8 ASP A 177 GLY A 196 1 20 HELIX 9 9 ASP A 205 ARG A 210 1 6 HELIX 10 10 GLY B 1043 GLY B 1052 1 10 HELIX 11 11 ASP B 1073 LYS B 1084 1 12 HELIX 12 12 THR B 1099 TYR B 1112 1 14 HELIX 13 13 SER B 1117 ALA B 1132 1 16 HELIX 14 14 GLU B 1135 ALA B 1139 5 5 HELIX 15 15 LYS B 1142 LEU B 1146 5 5 HELIX 16 16 SER B 1147 ALA B 1161 1 15 HELIX 17 17 ASP B 1177 GLY B 1196 1 20 HELIX 18 18 ASP B 1205 ARG B 1210 1 6 SHEET 1 A 4 GLU A 16 ILE A 28 0 SHEET 2 A 4 VAL A 2 MET A 13 -1 N TYR A 11 O ILE A 18 SHEET 3 A 4 GLU A 59 ILE A 64 -1 O GLU A 59 N THR A 8 SHEET 4 A 4 ILE A 67 LYS A 68 -1 O ILE A 67 N ILE A 64 SHEET 1 B 6 ILE A 85 VAL A 88 0 SHEET 2 B 6 ILE A 166 ASP A 170 1 O LEU A 168 N VAL A 88 SHEET 3 B 6 THR A 198 VAL A 202 1 O THR A 198 N ILE A 167 SHEET 4 B 6 PHE A 33 MET A 37 1 N ILE A 36 O VAL A 201 SHEET 5 B 6 ARG A 214 LYS A 219 1 O ILE A 216 N SER A 35 SHEET 6 B 6 GLU A 222 LYS A 228 -1 O ARG A 225 N TYR A 217 SHEET 1 C 4 GLU B1016 ILE B1028 0 SHEET 2 C 4 VAL B1002 MET B1013 -1 N TYR B1011 O ILE B1018 SHEET 3 C 4 GLU B1059 ILE B1064 -1 O GLU B1059 N THR B1008 SHEET 4 C 4 ILE B1067 LYS B1068 -1 O ILE B1067 N ILE B1064 SHEET 1 D 6 ILE B1085 VAL B1088 0 SHEET 2 D 6 ILE B1166 ASP B1170 1 O LEU B1168 N GLY B1086 SHEET 3 D 6 THR B1198 VAL B1202 1 O VAL B1202 N ALA B1169 SHEET 4 D 6 PHE B1033 MET B1037 1 N VAL B1034 O VAL B1199 SHEET 5 D 6 ARG B1214 LYS B1219 1 O ILE B1216 N SER B1035 SHEET 6 D 6 GLU B1222 LYS B1228 -1 O ARG B1225 N TYR B1217 LINK OG SER A 45 NA NA A 238 1555 1555 2.70 LINK OE1AGLN A 90 NA NA A 238 1555 1555 3.06 LINK OE1 GLN A 171 NA NA A 238 1555 1555 2.83 LINK O1B ADP A 236 NA NA A 238 1555 1555 2.94 LINK O3 PI A 237 NA NA A 238 1555 1555 2.74 LINK O3B ADP B 1 NA NA B1237 1555 1555 2.71 LINK O HOH B 7 NA NA B1237 1555 1555 2.40 LINK O HOH B 76 NA NA B1237 1555 1555 2.56 LINK OG SER B1045 NA NA B1237 1555 1555 2.57 LINK OE1 GLN B1090 NA NA B1237 1555 1555 2.58 LINK O3 PI B1236 NA NA B1237 1555 1555 2.44 SITE 1 AC1 19 GLN A 145 SER A 147 GLN A 150 HOH A 313 SITE 2 AC1 19 IPA A1602 HOH B 7 HOH B 70 HOH B 165 SITE 3 AC1 19 TYR B1011 MET B1013 ALA B1020 GLY B1041 SITE 4 AC1 19 SER B1042 GLY B1043 LYS B1044 SER B1045 SITE 5 AC1 19 THR B1046 PI B1236 NA B1237 SITE 1 AC2 10 SER A 147 GLY A 149 ALA A 175 ADP B 1 SITE 2 AC2 10 SER B1040 LYS B1044 GLN B1090 GLN B1171 SITE 3 AC2 10 HIS B1204 NA B1237 SITE 1 AC3 17 TYR A 11 ALA A 20 GLY A 41 SER A 42 SITE 2 AC3 17 GLY A 43 LYS A 44 SER A 45 THR A 46 SITE 3 AC3 17 PI A 237 NA A 238 HOH A 281 HOH A 333 SITE 4 AC3 17 HOH B 179 PHE B1138 GLN B1145 SER B1147 SITE 5 AC3 17 GLN B1150 SITE 1 AC4 11 SER A 40 LYS A 44 GLN A 90 GLN A 171 SITE 2 AC4 11 HIS A 204 ADP A 236 NA A 238 SER B1147 SITE 3 AC4 11 GLY B1148 GLY B1149 ALA B1175 SITE 1 AC5 6 SER A 178 GLY A 181 GLU A 182 ASP A 205 SITE 2 AC5 6 ASN A 207 HOH A 277 SITE 1 AC6 4 SER B1178 GLY B1181 GLU B1182 ASP B1205 SITE 1 AC7 3 ASN A 144 LEU A 146 ADP B 1 SITE 1 AC8 6 ADP B 1 HOH B 7 HOH B 76 SER B1045 SITE 2 AC8 6 GLN B1090 PI B1236 SITE 1 AC9 6 SER A 45 GLN A 90 ASP A 170 GLN A 171 SITE 2 AC9 6 ADP A 236 PI A 237 CRYST1 80.649 106.347 117.232 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012399 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009403 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008530 0.00000