HEADER OXIDOREDUCTASE 24-AUG-11 3TJL TITLE CRYSTAL STRUCTURE OF A NOVEL OYE FROM THE XYLOSE-FERMENTING FUNGUS P. TITLE 2 STIPITIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.6.99.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHEFFERSOMYCES STIPITIS CBS 6054; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 322104; SOURCE 5 STRAIN: ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545; SOURCE 6 GENE: OYE2.6, PICST_44614; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-26B KEYWDS OLD YELLOW ENZYME, FLAVIN MONONUCLEOTIDE, TIM BARREL, NADPH KEYWDS 2 OXIDOREDUCTASE, ENONE REDUCTASE, ALKENE REDUCTASE, KEYWDS 3 STEREOCOMPLEMENTARITY, STEREOSELECTIVE, PARALLEL ALPHA/BETA BARREL, KEYWDS 4 BIOCATALYSIS, NADPH, FMN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.A.POMPEU,J.D.STEWART REVDAT 4 13-SEP-23 3TJL 1 REMARK SEQADV LINK REVDAT 3 29-APR-15 3TJL 1 HETSYN REVDAT 2 23-JUL-14 3TJL 1 REMARK REVDAT 1 11-JUL-12 3TJL 0 JRNL AUTH Y.A.POMPEU,B.SULLIVAN,A.Z.WALTON,J.D.STEWART JRNL TITL STRUCTURAL AND CATALYTIC CHARACTERIZATION OF PICHIA STIPITIS JRNL TITL 2 OYE 2.6, A USEFUL BIOCATALYST FOR ASYMMETRIC ALKENE JRNL TITL 3 REDUCTIONS JRNL REF ADV.SYNTH.CATAL. 2012 JRNL REFN ESSN 1615-4169 JRNL DOI 10.1002/ADSC.201200213 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_845) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 92358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9236 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.1227 - 4.6590 0.96 2961 329 0.1667 0.1728 REMARK 3 2 4.6590 - 3.6986 0.96 2786 310 0.1239 0.1234 REMARK 3 3 3.6986 - 3.2312 0.97 2795 310 0.1395 0.1526 REMARK 3 4 3.2312 - 2.9358 0.98 2782 309 0.1548 0.1860 REMARK 3 5 2.9358 - 2.7254 0.98 2795 311 0.1622 0.1825 REMARK 3 6 2.7254 - 2.5648 0.99 2782 309 0.1542 0.1870 REMARK 3 7 2.5648 - 2.4363 0.99 2781 309 0.1411 0.1734 REMARK 3 8 2.4363 - 2.3303 0.99 2787 310 0.1262 0.1393 REMARK 3 9 2.3303 - 2.2406 0.99 2774 308 0.1236 0.1544 REMARK 3 10 2.2406 - 2.1633 0.99 2791 310 0.1176 0.1468 REMARK 3 11 2.1633 - 2.0956 0.99 2774 309 0.1291 0.1510 REMARK 3 12 2.0956 - 2.0357 0.99 2763 307 0.1288 0.1700 REMARK 3 13 2.0357 - 1.9821 1.00 2767 307 0.1222 0.1550 REMARK 3 14 1.9821 - 1.9338 1.00 2780 309 0.1279 0.1734 REMARK 3 15 1.9338 - 1.8898 1.00 2777 309 0.1235 0.1589 REMARK 3 16 1.8898 - 1.8496 1.00 2765 306 0.1235 0.1571 REMARK 3 17 1.8496 - 1.8126 1.00 2762 307 0.1251 0.1914 REMARK 3 18 1.8126 - 1.7784 1.00 2763 307 0.1191 0.1693 REMARK 3 19 1.7784 - 1.7466 1.00 2758 306 0.1233 0.1733 REMARK 3 20 1.7466 - 1.7170 1.00 2767 309 0.1279 0.1749 REMARK 3 21 1.7170 - 1.6893 1.00 2775 308 0.1267 0.1723 REMARK 3 22 1.6893 - 1.6633 1.00 2757 306 0.1415 0.2045 REMARK 3 23 1.6633 - 1.6389 1.00 2764 307 0.1482 0.2166 REMARK 3 24 1.6389 - 1.6158 1.00 2767 308 0.1555 0.2232 REMARK 3 25 1.6158 - 1.5940 1.00 2734 304 0.1667 0.2265 REMARK 3 26 1.5940 - 1.5732 1.00 2761 306 0.1837 0.2356 REMARK 3 27 1.5732 - 1.5536 1.00 2756 306 0.2042 0.2586 REMARK 3 28 1.5536 - 1.5349 1.00 2725 303 0.2108 0.2541 REMARK 3 29 1.5349 - 1.5170 0.98 2726 303 0.2354 0.2893 REMARK 3 30 1.5170 - 1.5000 0.96 2647 294 0.2693 0.3252 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.11 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 44.49 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92100 REMARK 3 B22 (A**2) : 0.92100 REMARK 3 B33 (A**2) : -1.84190 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3373 REMARK 3 ANGLE : 1.332 4606 REMARK 3 CHIRALITY : 0.094 509 REMARK 3 PLANARITY : 0.007 601 REMARK 3 DIHEDRAL : 14.283 1255 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SI 111 REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92358 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 1.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1OYA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4M SODIUM MALONATE 1-3% 2-PROPANOL, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.22850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.22850 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.22850 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.22850 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 61.22850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 61.22850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 61.22850 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 582 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 600 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 842 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 406 REMARK 465 LEU A 407 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 85 41.53 -142.50 REMARK 500 ALA A 252 -132.40 53.53 REMARK 500 TYR A 381 -77.76 -109.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 409 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 26 OE1 REMARK 620 2 HOH A 614 O 94.6 REMARK 620 3 HOH A 737 O 110.6 90.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 410 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 335 O REMARK 620 2 ASP A 338 OD2 107.9 REMARK 620 3 HOH A 644 O 72.1 77.3 REMARK 620 4 HOH A 707 O 110.0 77.0 153.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 411 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 418 O REMARK 620 2 HOH A 452 O 175.7 REMARK 620 3 HOH A 457 O 79.1 96.6 REMARK 620 4 HOH A 503 O 86.2 98.1 162.7 REMARK 620 5 HOH A 660 O 85.9 94.7 92.0 77.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 412 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 503 O REMARK 620 2 HOH A 505 O 84.6 REMARK 620 3 HOH A 660 O 78.4 157.3 REMARK 620 4 HOH A 720 O 99.5 98.3 99.2 REMARK 620 5 HOH A 838 O 156.5 96.9 93.0 103.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA A 415 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OYA RELATED DB: PDB REMARK 900 BREWER'S YEAST HOMOLOGUE REMARK 900 RELATED ID: 3UPW RELATED DB: PDB REMARK 900 RELATED ID: 4DF2 RELATED DB: PDB DBREF 3TJL A 1 407 UNP A3LT82 A3LT82_PICST 1 407 SEQADV 3TJL ALA A 169 UNP A3LT82 THR 169 ENGINEERED MUTATION SEQRES 1 A 407 MET SER SER VAL LYS ILE SER PRO LEU LYS ASP SER GLU SEQRES 2 A 407 ALA PHE GLN SER ILE LYS VAL GLY ASN ASN THR LEU GLN SEQRES 3 A 407 THR LYS ILE VAL TYR PRO PRO THR THR ARG PHE ARG ALA SEQRES 4 A 407 LEU GLU ASP HIS THR PRO SER ASP LEU GLN LEU GLN TYR SEQRES 5 A 407 TYR GLY ASP ARG SER THR PHE PRO GLY THR LEU LEU ILE SEQRES 6 A 407 THR GLU ALA THR PHE VAL SER PRO GLN ALA SER GLY TYR SEQRES 7 A 407 GLU GLY ALA ALA PRO GLY ILE TRP THR ASP LYS HIS ALA SEQRES 8 A 407 LYS ALA TRP LYS VAL ILE THR ASP LYS VAL HIS ALA ASN SEQRES 9 A 407 GLY SER PHE VAL SER THR GLN LEU ILE PHE LEU GLY ARG SEQRES 10 A 407 VAL ALA ASP PRO ALA VAL MET LYS THR ARG GLY LEU ASN SEQRES 11 A 407 PRO VAL SER ALA SER ALA THR TYR GLU SER ASP ALA ALA SEQRES 12 A 407 LYS GLU ALA ALA GLU ALA VAL GLY ASN PRO VAL ARG ALA SEQRES 13 A 407 LEU THR THR GLN GLU VAL LYS ASP LEU VAL TYR GLU ALA SEQRES 14 A 407 TYR THR ASN ALA ALA GLN LYS ALA MET ASP ALA GLY PHE SEQRES 15 A 407 ASP TYR ILE GLU LEU HIS ALA ALA HIS GLY TYR LEU LEU SEQRES 16 A 407 ASP GLN PHE LEU GLN PRO CYS THR ASN GLN ARG THR ASP SEQRES 17 A 407 GLU TYR GLY GLY SER ILE GLU ASN ARG ALA ARG LEU ILE SEQRES 18 A 407 LEU GLU LEU ILE ASP HIS LEU SER THR ILE VAL GLY ALA SEQRES 19 A 407 ASP LYS ILE GLY ILE ARG ILE SER PRO TRP ALA THR PHE SEQRES 20 A 407 GLN ASN MET LYS ALA HIS LYS ASP THR VAL HIS PRO LEU SEQRES 21 A 407 THR THR PHE SER TYR LEU VAL HIS GLU LEU GLN GLN ARG SEQRES 22 A 407 ALA ASP LYS GLY GLN GLY ILE ALA TYR ILE SER VAL VAL SEQRES 23 A 407 GLU PRO ARG VAL SER GLY ASN VAL ASP VAL SER GLU GLU SEQRES 24 A 407 ASP GLN ALA GLY ASP ASN GLU PHE VAL SER LYS ILE TRP SEQRES 25 A 407 LYS GLY VAL ILE LEU LYS ALA GLY ASN TYR SER TYR ASP SEQRES 26 A 407 ALA PRO GLU PHE LYS THR LEU LYS GLU ASP ILE ALA ASP SEQRES 27 A 407 LYS ARG THR LEU VAL GLY PHE SER ARG TYR PHE THR SER SEQRES 28 A 407 ASN PRO ASN LEU VAL TRP LYS LEU ARG ASP GLY ILE ASP SEQRES 29 A 407 LEU VAL PRO TYR ASP ARG ASN THR PHE TYR SER ASP ASN SEQRES 30 A 407 ASN TYR GLY TYR ASN THR PHE SER MET ASP SER GLU GLU SEQRES 31 A 407 VAL ASP LYS GLU LEU GLU ILE LYS ARG VAL PRO SER ALA SEQRES 32 A 407 ILE GLU ALA LEU HET FMN A 408 31 HET NA A 409 1 HET NA A 410 1 HET NA A 411 1 HET NA A 412 1 HET MLA A 413 7 HET MLA A 414 7 HET MLA A 415 7 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM NA SODIUM ION HETNAM MLA MALONIC ACID HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 NA 4(NA 1+) FORMUL 7 MLA 3(C3 H4 O4) FORMUL 10 HOH *515(H2 O) HELIX 1 1 SER A 12 GLN A 16 5 5 HELIX 2 2 SER A 46 ARG A 56 1 11 HELIX 3 3 SER A 72 SER A 76 5 5 HELIX 4 4 THR A 87 ASN A 104 1 18 HELIX 5 5 LEU A 115 ALA A 119 5 5 HELIX 6 6 ASP A 120 ARG A 127 1 8 HELIX 7 7 SER A 140 VAL A 150 1 11 HELIX 8 8 THR A 158 GLU A 168 1 11 HELIX 9 9 GLU A 168 ALA A 180 1 13 HELIX 10 10 TYR A 193 GLN A 200 1 8 HELIX 11 11 SER A 213 GLY A 233 1 21 HELIX 12 12 THR A 246 MET A 250 5 5 HELIX 13 13 LYS A 251 ASP A 255 5 5 HELIX 14 14 HIS A 258 LYS A 276 1 19 HELIX 15 15 SER A 297 GLN A 301 5 5 HELIX 16 16 ASN A 305 TRP A 312 1 8 HELIX 17 17 ASN A 321 ALA A 326 5 6 HELIX 18 18 PHE A 329 ALA A 337 1 9 HELIX 19 19 SER A 346 ASN A 352 1 7 HELIX 20 20 ASN A 354 GLY A 362 1 9 HELIX 21 21 ASP A 369 PHE A 373 5 5 HELIX 22 22 TYR A 381 MET A 386 5 6 HELIX 23 23 ASP A 387 VAL A 391 5 5 HELIX 24 24 ASP A 392 LYS A 398 1 7 SHEET 1 A 2 ILE A 18 VAL A 20 0 SHEET 2 A 2 ASN A 23 LEU A 25 -1 O ASN A 23 N VAL A 20 SHEET 1 B 8 ILE A 29 VAL A 30 0 SHEET 2 B 8 THR A 341 GLY A 344 1 O VAL A 343 N VAL A 30 SHEET 3 B 8 VAL A 315 ALA A 319 1 N ILE A 316 O LEU A 342 SHEET 4 B 8 TYR A 282 VAL A 286 1 N VAL A 285 O LEU A 317 SHEET 5 B 8 ILE A 237 ILE A 241 1 N ILE A 239 O SER A 284 SHEET 6 B 8 TYR A 184 HIS A 188 1 N LEU A 187 O GLY A 238 SHEET 7 B 8 PHE A 107 ILE A 113 1 N THR A 110 O GLU A 186 SHEET 8 B 8 LEU A 63 PHE A 70 1 N THR A 66 O SER A 109 SHEET 1 C 2 VAL A 132 SER A 133 0 SHEET 2 C 2 ARG A 155 ALA A 156 1 O ARG A 155 N SER A 133 SHEET 1 D 2 VAL A 290 SER A 291 0 SHEET 2 D 2 VAL A 294 ASP A 295 -1 O VAL A 294 N SER A 291 LINK OE1 GLN A 26 NA NA A 409 1555 1555 2.63 LINK O ASP A 335 NA NA A 410 1555 1555 2.71 LINK OD2 ASP A 338 NA NA A 410 1555 1555 2.87 LINK NA NA A 409 O HOH A 614 1555 1555 2.70 LINK NA NA A 409 O HOH A 737 1555 1555 2.81 LINK NA NA A 410 O HOH A 644 1555 1555 2.82 LINK NA NA A 410 O HOH A 707 1555 1555 2.31 LINK NA NA A 411 O HOH A 418 1555 1555 3.16 LINK NA NA A 411 O HOH A 452 1555 1555 2.13 LINK NA NA A 411 O HOH A 457 1555 1555 2.35 LINK NA NA A 411 O HOH A 503 1555 1555 2.83 LINK NA NA A 411 O HOH A 660 1555 1555 2.76 LINK NA NA A 412 O HOH A 503 1555 1555 2.75 LINK NA NA A 412 O HOH A 505 1555 1555 2.18 LINK NA NA A 412 O HOH A 660 1555 1555 2.81 LINK NA NA A 412 O HOH A 720 1555 1555 3.17 LINK NA NA A 412 O HOH A 838 1555 1555 2.97 CISPEP 1 ALA A 326 PRO A 327 0 7.20 SITE 1 AC1 22 PRO A 32 PRO A 33 THR A 34 THR A 35 SITE 2 AC1 22 ALA A 68 GLN A 111 HIS A 188 HIS A 191 SITE 3 AC1 22 ARG A 240 GLY A 292 GLY A 320 ASN A 321 SITE 4 AC1 22 PHE A 345 SER A 346 ARG A 347 PHE A 373 SITE 5 AC1 22 TYR A 374 MLA A 415 HOH A 567 HOH A 599 SITE 6 AC1 22 HOH A 603 HOH A 638 SITE 1 AC2 6 GLN A 26 ASN A 104 HOH A 549 HOH A 614 SITE 2 AC2 6 HOH A 737 HOH A 770 SITE 1 AC3 5 ASP A 335 ASP A 338 THR A 341 HOH A 644 SITE 2 AC3 5 HOH A 707 SITE 1 AC4 4 HOH A 452 HOH A 457 HOH A 503 HOH A 660 SITE 1 AC5 4 HOH A 503 HOH A 505 HOH A 660 HOH A 838 SITE 1 AC6 8 TYR A 78 GLU A 79 GLY A 80 HOH A 418 SITE 2 AC6 8 HOH A 505 HOH A 538 HOH A 838 HOH A 895 SITE 1 AC7 10 HIS A 43 SER A 76 TYR A 78 VAL A 123 SITE 2 AC7 10 ARG A 127 HOH A 677 HOH A 745 HOH A 794 SITE 3 AC7 10 HOH A 829 HOH A 872 SITE 1 AC8 9 ILE A 113 HIS A 188 HIS A 191 TYR A 193 SITE 2 AC8 9 GLY A 292 ASN A 293 FMN A 408 HOH A 461 SITE 3 AC8 9 HOH A 611 CRYST1 127.164 127.164 122.457 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007864 0.004540 0.000000 0.00000 SCALE2 0.000000 0.009080 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008166 0.00000