HEADER HYDROLASE/PEPTIDE 29-AUG-11 3TKZ TITLE STRUCTURE OF THE SHP-2 N-SH2 DOMAIN IN A 1:2 COMPLEX WITH RVIPYFVPLNR TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL SH2 DOMAIN (UNP RESIDUES 1-106); COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1D, PTP-1D, PROTEIN-TYROSINE COMPND 6 PHOSPHATASE 2C, PTP-2C, SH-PTP2, SHP-2, SHP2, SH-PTP3; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PROTEIN (RVIPYFVPLNR PEPTIDE); COMPND 11 CHAIN: P, Q; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: Y4 RESIDUE IS PHOSPHORYLATED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN11, PTP2C, SHPTP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THE PEPTIDE WAS SYNTHESIZED USING STANDARD FMOC/HBTU SOURCE 14 CHEMISTRY KEYWDS SH2 DOMAIN, PROTEIN PROTEIN INTERACTIONS, PTR RESIDUES, HYDROLASE- KEYWDS 2 PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,J.ZHANG,C.YUAN,R.L.HARD,I.H.PARK,C.LI,C.E.BELL,D.PEI REVDAT 4 16-OCT-24 3TKZ 1 REMARK REVDAT 3 06-DEC-23 3TKZ 1 REMARK REVDAT 2 13-SEP-23 3TKZ 1 SEQADV SHEET LINK REVDAT 1 26-OCT-11 3TKZ 0 JRNL AUTH Y.ZHANG,J.ZHANG,C.YUAN,R.L.HARD,I.H.PARK,C.LI,C.BELL,D.PEI JRNL TITL SIMULTANEOUS BINDING OF TWO PEPTIDYL LIGANDS BY A SRC JRNL TITL 2 HOMOLOGY 2 DOMAIN. JRNL REF BIOCHEMISTRY V. 50 7637 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21800896 JRNL DOI 10.1021/BI200439V REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0100 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 13727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 728 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 992 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.4310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 911 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.508 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 934 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1272 ; 1.960 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 110 ; 7.397 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 46 ;39.781 ;23.696 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 141 ;15.929 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;17.219 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 137 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 717 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 558 ; 1.277 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 897 ; 2.291 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 376 ; 3.376 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 375 ; 5.397 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 10 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3280 26.7700 11.0270 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.2177 REMARK 3 T33: 0.2268 T12: 0.0149 REMARK 3 T13: 0.0536 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 6.7029 L22: 7.6224 REMARK 3 L33: 18.7069 L12: 0.9577 REMARK 3 L13: -3.7751 L23: 5.4317 REMARK 3 S TENSOR REMARK 3 S11: 0.5925 S12: 0.2835 S13: 0.5659 REMARK 3 S21: -0.0385 S22: -0.5522 S23: 0.0884 REMARK 3 S31: -1.0321 S32: -0.8278 S33: -0.0403 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2560 24.0480 22.5780 REMARK 3 T TENSOR REMARK 3 T11: 0.3023 T22: 0.3232 REMARK 3 T33: 0.1495 T12: -0.1626 REMARK 3 T13: 0.1130 T23: -0.1118 REMARK 3 L TENSOR REMARK 3 L11: 9.4046 L22: 7.8926 REMARK 3 L33: 3.2981 L12: 6.3330 REMARK 3 L13: -1.0112 L23: 0.6101 REMARK 3 S TENSOR REMARK 3 S11: 0.5100 S12: -0.9650 S13: 0.6350 REMARK 3 S21: 0.2458 S22: -0.2827 S23: 0.7107 REMARK 3 S31: -0.8073 S32: 0.5294 S33: -0.2274 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0600 19.7350 18.5610 REMARK 3 T TENSOR REMARK 3 T11: 0.1357 T22: 0.4002 REMARK 3 T33: 0.1379 T12: -0.0911 REMARK 3 T13: 0.0288 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 4.7631 L22: 2.1978 REMARK 3 L33: 2.9983 L12: 2.3145 REMARK 3 L13: -0.6914 L23: -0.1741 REMARK 3 S TENSOR REMARK 3 S11: 0.2107 S12: -0.5491 S13: 0.0255 REMARK 3 S21: 0.1815 S22: -0.4404 S23: 0.1762 REMARK 3 S31: -0.2377 S32: 0.7722 S33: 0.2297 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 73 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7060 18.9930 8.8010 REMARK 3 T TENSOR REMARK 3 T11: 0.0905 T22: 0.2471 REMARK 3 T33: 0.2351 T12: -0.0181 REMARK 3 T13: 0.0074 T23: 0.1179 REMARK 3 L TENSOR REMARK 3 L11: 3.1009 L22: 1.3255 REMARK 3 L33: 2.9968 L12: 1.8937 REMARK 3 L13: -0.4768 L23: 0.0295 REMARK 3 S TENSOR REMARK 3 S11: 0.1125 S12: -0.5317 S13: -0.2698 REMARK 3 S21: -0.1184 S22: -0.1985 S23: -0.2925 REMARK 3 S31: -0.0988 S32: 0.1152 S33: 0.0860 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 74 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3330 14.8570 5.3310 REMARK 3 T TENSOR REMARK 3 T11: 0.1466 T22: 0.1802 REMARK 3 T33: 0.1767 T12: -0.0070 REMARK 3 T13: 0.0141 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 3.5334 L22: 8.0975 REMARK 3 L33: 1.9688 L12: 2.7493 REMARK 3 L13: -2.2905 L23: -0.0203 REMARK 3 S TENSOR REMARK 3 S11: -0.1452 S12: -0.0318 S13: -0.2625 REMARK 3 S21: -0.1871 S22: -0.1053 S23: -0.1827 REMARK 3 S31: 0.0344 S32: -0.0375 S33: 0.2505 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3830 5.3400 15.7090 REMARK 3 T TENSOR REMARK 3 T11: 0.2259 T22: 0.3879 REMARK 3 T33: 0.4733 T12: -0.0505 REMARK 3 T13: 0.0310 T23: 0.4282 REMARK 3 L TENSOR REMARK 3 L11: 9.1190 L22: 5.2815 REMARK 3 L33: 26.2324 L12: 0.5141 REMARK 3 L13: -2.9926 L23: -4.5675 REMARK 3 S TENSOR REMARK 3 S11: -0.1402 S12: -1.5718 S13: -1.9338 REMARK 3 S21: 0.1266 S22: 0.0009 S23: -0.0498 REMARK 3 S31: 1.4490 S32: -0.3029 S33: 0.1393 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9900 14.1230 13.0600 REMARK 3 T TENSOR REMARK 3 T11: 0.0973 T22: 0.2312 REMARK 3 T33: 0.3249 T12: 0.0014 REMARK 3 T13: 0.0121 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 6.3435 L22: 2.8936 REMARK 3 L33: 4.9276 L12: 3.6393 REMARK 3 L13: -1.2723 L23: -0.5997 REMARK 3 S TENSOR REMARK 3 S11: -0.0730 S12: -0.2035 S13: -0.4136 REMARK 3 S21: -0.1641 S22: -0.2987 S23: 0.2708 REMARK 3 S31: -0.1339 S32: 0.1537 S33: 0.3717 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TKZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067607. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15827 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 61.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.60 REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP OF CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1AYD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1M BIS-TRIS, 0.2M REMARK 280 LI2SO4, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.66100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.43250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.43250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.49150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.43250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.43250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.83050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.43250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.43250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.49150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.43250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.43250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.83050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.66100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 167 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 CYS A 104 REMARK 465 ALA A 105 REMARK 465 ASP A 106 REMARK 465 ARG P 1 REMARK 465 ASN P 9 REMARK 465 ARG P 10 REMARK 465 ARG Q 1 REMARK 465 LEU Q 8 REMARK 465 ASN Q 9 REMARK 465 ARG Q 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 LYS A 91 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 76 OE2 GLU A 76 7555 0.99 REMARK 500 CD GLU A 76 OE2 GLU A 76 7555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 64 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 91 19.64 -67.63 REMARK 500 ASN A 92 33.28 -177.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TL0 RELATED DB: PDB DBREF 3TKZ A 1 106 UNP Q06124 PTN11_HUMAN 1 106 DBREF 3TKZ P 1 10 PDB 3TKZ 3TKZ 1 10 DBREF 3TKZ Q 1 10 PDB 3TKZ 3TKZ 1 10 SEQADV 3TKZ GLY A -2 UNP Q06124 EXPRESSION TAG SEQADV 3TKZ SER A -1 UNP Q06124 EXPRESSION TAG SEQADV 3TKZ HIS A 0 UNP Q06124 EXPRESSION TAG SEQRES 1 A 109 GLY SER HIS MET THR SER ARG ARG TRP PHE HIS PRO ASN SEQRES 2 A 109 ILE THR GLY VAL GLU ALA GLU ASN LEU LEU LEU THR ARG SEQRES 3 A 109 GLY VAL ASP GLY SER PHE LEU ALA ARG PRO SER LYS SER SEQRES 4 A 109 ASN PRO GLY ASP PHE THR LEU SER VAL ARG ARG ASN GLY SEQRES 5 A 109 ALA VAL THR HIS ILE LYS ILE GLN ASN THR GLY ASP TYR SEQRES 6 A 109 TYR ASP LEU TYR GLY GLY GLU LYS PHE ALA THR LEU ALA SEQRES 7 A 109 GLU LEU VAL GLN TYR TYR MET GLU HIS HIS GLY GLN LEU SEQRES 8 A 109 LYS GLU LYS ASN GLY ASP VAL ILE GLU LEU LYS TYR PRO SEQRES 9 A 109 LEU ASN CYS ALA ASP SEQRES 1 P 10 ARG VAL ILE PTR PHE VAL PRO LEU ASN ARG SEQRES 1 Q 10 ARG VAL ILE PTR PHE VAL PRO LEU ASN ARG MODRES 3TKZ PTR P 4 TYR O-PHOSPHOTYROSINE MODRES 3TKZ PTR Q 4 TYR O-PHOSPHOTYROSINE HET PTR P 4 16 HET PTR Q 4 16 HETNAM PTR O-PHOSPHOTYROSINE HETSYN PTR PHOSPHONOTYROSINE FORMUL 2 PTR 2(C9 H12 N O6 P) FORMUL 4 HOH *81(H2 O) HELIX 1 1 THR A 12 GLY A 24 1 13 HELIX 2 2 THR A 73 HIS A 84 1 12 SHEET 1 A 5 TYR A 63 ASP A 64 0 SHEET 2 A 5 ALA A 50 ASN A 58 -1 N GLN A 57 O ASP A 64 SHEET 3 A 5 PHE A 41 ARG A 47 -1 N LEU A 43 O ILE A 54 SHEET 4 A 5 SER A 28 PRO A 33 -1 N SER A 28 O ARG A 46 SHEET 5 A 5 TYR A 100 PRO A 101 1 O TYR A 100 N PHE A 29 SHEET 1 B 1 LEU A 88 GLU A 90 0 LINK C ILE P 3 N PTR P 4 1555 1555 1.34 LINK C PTR P 4 N PHE P 5 1555 1555 1.31 LINK C ILE Q 3 N PTR Q 4 1555 1555 1.35 LINK C PTR Q 4 N PHE Q 5 1555 1555 1.32 CISPEP 1 ARG A 4 ARG A 5 0 18.07 CISPEP 2 ASN A 92 GLY A 93 0 10.93 CRYST1 62.865 62.865 75.322 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015907 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015907 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013276 0.00000