HEADER TRANSCRIPTION 30-AUG-11 3TLP TITLE CRYSTAL STRUCTURE OF THE FOURTH BROMODOMAIN OF HUMAN POLY-BROMODOMAIN TITLE 2 CONTAINING PROTEIN 1 (PB1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN POLYBROMO-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 496-637; COMPND 5 SYNONYM: HPB1, BRG1-ASSOCIATED FACTOR 180, BAF180, POLYBROMO-1D; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BAF180, PB1, PBRM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-CTHF KEYWDS PB1, POLYBROMO 1 ISOFORM 1, BAF180, POLYBROMO-1D, PBRM1, BRG1- KEYWDS 2 ASSOCIATED FACTOR 180, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 BROMODOMAIN, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,I.FELLETAR,S.PICAUD,T.KEATES,J.MUNIZ,T.KROJER, AUTHOR 2 C.K.ALLERSTON,S.LATWIEL,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 3 J.WEIGELT,C.BOUNTRA,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 13-SEP-23 3TLP 1 REMARK SEQADV LINK REVDAT 2 11-APR-12 3TLP 1 JRNL REVDAT 1 28-SEP-11 3TLP 0 JRNL AUTH P.FILIPPAKOPOULOS,S.PICAUD,M.MANGOS,T.KEATES,J.P.LAMBERT, JRNL AUTH 2 D.BARSYTE-LOVEJOY,I.FELLETAR,R.VOLKMER,S.MULLER,T.PAWSON, JRNL AUTH 3 A.C.GINGRAS,C.H.ARROWSMITH,S.KNAPP JRNL TITL HISTONE RECOGNITION AND LARGE-SCALE STRUCTURAL ANALYSIS OF JRNL TITL 2 THE HUMAN BROMODOMAIN FAMILY. JRNL REF CELL(CAMBRIDGE,MASS.) V. 149 214 2012 JRNL REFN ISSN 0092-8674 JRNL PMID 22464331 JRNL DOI 10.1016/J.CELL.2012.02.013 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 18831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 973 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.13 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.19 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1154 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1889 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.063 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1922 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1380 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2577 ; 1.324 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3353 ; 1.173 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 234 ; 5.315 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;34.493 ;23.763 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 370 ;15.792 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;20.708 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 272 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2116 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 381 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 478 A 596 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4373 0.8098 23.4788 REMARK 3 T TENSOR REMARK 3 T11: 0.1105 T22: 0.0738 REMARK 3 T33: 0.1199 T12: -0.0055 REMARK 3 T13: 0.0566 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.1385 L22: 1.3832 REMARK 3 L33: 0.4554 L12: -0.1967 REMARK 3 L13: -0.0134 L23: 0.4100 REMARK 3 S TENSOR REMARK 3 S11: 0.0811 S12: -0.0774 S13: 0.0784 REMARK 3 S21: -0.2609 S22: -0.0019 S23: -0.1848 REMARK 3 S31: -0.0152 S32: -0.0452 S33: -0.0792 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 481 B 597 REMARK 3 ORIGIN FOR THE GROUP (A): -14.2743 -11.3717 7.6500 REMARK 3 T TENSOR REMARK 3 T11: 0.0408 T22: 0.1208 REMARK 3 T33: 0.1164 T12: 0.0199 REMARK 3 T13: -0.0010 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.6657 L22: 0.4664 REMARK 3 L33: 0.4866 L12: -0.2221 REMARK 3 L13: 0.5481 L23: -0.2610 REMARK 3 S TENSOR REMARK 3 S11: -0.0927 S12: -0.0975 S13: -0.0239 REMARK 3 S21: 0.0298 S22: 0.0759 S23: 0.0232 REMARK 3 S31: -0.0920 S32: -0.0761 S33: 0.0168 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3TLP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067630. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18871 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 19.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : 0.06200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.88000 REMARK 200 R SYM FOR SHELL (I) : 0.88000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRIES 3HMF, 2OO1, 3DAI, 3HMH, 2OSS, 2OUO, REMARK 200 3D7C, 3DWY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG_MME_2000, 0.015M NICL, 0.1M REMARK 280 TRIS PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.71550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.95350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.11000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.95350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.71550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.11000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 463 REMARK 465 GLY A 464 REMARK 465 ASP A 465 REMARK 465 SER A 466 REMARK 465 MET A 467 REMARK 465 ILE A 468 REMARK 465 SER A 469 REMARK 465 SER A 470 REMARK 465 ALA A 471 REMARK 465 THR A 472 REMARK 465 SER A 473 REMARK 465 ASP A 474 REMARK 465 THR A 475 REMARK 465 GLY A 476 REMARK 465 SER A 477 REMARK 465 PRO A 597 REMARK 465 ASP A 598 REMARK 465 ASP A 599 REMARK 465 ASP A 600 REMARK 465 ASP A 601 REMARK 465 MET A 602 REMARK 465 ALA A 603 REMARK 465 SER A 604 REMARK 465 PRO A 605 REMARK 465 ALA A 606 REMARK 465 GLU A 607 REMARK 465 ASN A 608 REMARK 465 LEU A 609 REMARK 465 TYR A 610 REMARK 465 PHE A 611 REMARK 465 GLN A 612 REMARK 465 MET B 463 REMARK 465 GLY B 464 REMARK 465 ASP B 465 REMARK 465 SER B 466 REMARK 465 MET B 467 REMARK 465 ILE B 468 REMARK 465 SER B 469 REMARK 465 SER B 470 REMARK 465 ALA B 471 REMARK 465 THR B 472 REMARK 465 SER B 473 REMARK 465 ASP B 474 REMARK 465 THR B 475 REMARK 465 GLY B 476 REMARK 465 SER B 477 REMARK 465 ALA B 478 REMARK 465 LYS B 479 REMARK 465 ARG B 480 REMARK 465 ASP B 598 REMARK 465 ASP B 599 REMARK 465 ASP B 600 REMARK 465 ASP B 601 REMARK 465 MET B 602 REMARK 465 ALA B 603 REMARK 465 SER B 604 REMARK 465 PRO B 605 REMARK 465 ALA B 606 REMARK 465 GLU B 607 REMARK 465 ASN B 608 REMARK 465 LEU B 609 REMARK 465 TYR B 610 REMARK 465 PHE B 611 REMARK 465 GLN B 612 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 479 CD CE NZ REMARK 470 ARG A 480 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 481 CG CD CE NZ REMARK 470 SER A 482 OG REMARK 470 LYS A 483 CG CD CE NZ REMARK 470 LYS A 484 CD CE NZ REMARK 470 LYS A 492 CE NZ REMARK 470 LYS A 520 CD CE NZ REMARK 470 LYS A 521 CG CD CE NZ REMARK 470 LYS A 537 CD CE NZ REMARK 470 GLU A 552 CD OE1 OE2 REMARK 470 GLU A 588 CD OE1 OE2 REMARK 470 LYS A 591 CD CE NZ REMARK 470 LEU A 596 CG CD1 CD2 REMARK 470 LYS B 481 CG CD CE NZ REMARK 470 SER B 482 OG REMARK 470 LYS B 483 CG CD CE NZ REMARK 470 LYS B 484 CD CE NZ REMARK 470 ARG B 487 NE CZ NH1 NH2 REMARK 470 LYS B 492 CE NZ REMARK 470 LYS B 520 CE NZ REMARK 470 LYS B 521 CG CD CE NZ REMARK 470 LYS B 547 CE NZ REMARK 470 GLU B 552 CG CD OE1 OE2 REMARK 470 GLU B 570 CD OE1 OE2 REMARK 470 LEU B 596 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 596 PRO B 597 144.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 1 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 62 O REMARK 620 2 HOH A 63 O 91.1 REMARK 620 3 HOH A 64 O 92.8 171.4 REMARK 620 4 HOH A 68 O 81.0 92.3 80.7 REMARK 620 5 HIS A 567 NE2 171.7 97.1 79.1 98.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 3 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 541 NE2 REMARK 620 2 LYS A 547 NZ 85.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 4 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 580 NE2 REMARK 620 2 LYS A 584 NZ 61.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 2 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 60 O REMARK 620 2 HOH B 61 O 71.0 REMARK 620 3 HOH B 67 O 72.4 92.9 REMARK 620 4 HIS B 580 NE2 161.7 95.3 97.1 REMARK 620 5 LYS B 584 NZ 106.0 176.2 88.3 88.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 2 DBREF 3TLP A 464 605 UNP Q86U86 PB1_HUMAN 496 637 DBREF 3TLP B 464 605 UNP Q86U86 PB1_HUMAN 496 637 SEQADV 3TLP MET A 463 UNP Q86U86 EXPRESSION TAG SEQADV 3TLP ALA A 606 UNP Q86U86 EXPRESSION TAG SEQADV 3TLP GLU A 607 UNP Q86U86 EXPRESSION TAG SEQADV 3TLP ASN A 608 UNP Q86U86 EXPRESSION TAG SEQADV 3TLP LEU A 609 UNP Q86U86 EXPRESSION TAG SEQADV 3TLP TYR A 610 UNP Q86U86 EXPRESSION TAG SEQADV 3TLP PHE A 611 UNP Q86U86 EXPRESSION TAG SEQADV 3TLP GLN A 612 UNP Q86U86 EXPRESSION TAG SEQADV 3TLP MET B 463 UNP Q86U86 EXPRESSION TAG SEQADV 3TLP ALA B 606 UNP Q86U86 EXPRESSION TAG SEQADV 3TLP GLU B 607 UNP Q86U86 EXPRESSION TAG SEQADV 3TLP ASN B 608 UNP Q86U86 EXPRESSION TAG SEQADV 3TLP LEU B 609 UNP Q86U86 EXPRESSION TAG SEQADV 3TLP TYR B 610 UNP Q86U86 EXPRESSION TAG SEQADV 3TLP PHE B 611 UNP Q86U86 EXPRESSION TAG SEQADV 3TLP GLN B 612 UNP Q86U86 EXPRESSION TAG SEQRES 1 A 150 MET GLY ASP SER MET ILE SER SER ALA THR SER ASP THR SEQRES 2 A 150 GLY SER ALA LYS ARG LYS SER LYS LYS ASN ILE ARG LYS SEQRES 3 A 150 GLN ARG MET LYS ILE LEU PHE ASN VAL VAL LEU GLU ALA SEQRES 4 A 150 ARG GLU PRO GLY SER GLY ARG ARG LEU CYS ASP LEU PHE SEQRES 5 A 150 MET VAL LYS PRO SER LYS LYS ASP TYR PRO ASP TYR TYR SEQRES 6 A 150 LYS ILE ILE LEU GLU PRO MET ASP LEU LYS ILE ILE GLU SEQRES 7 A 150 HIS ASN ILE ARG ASN ASP LYS TYR ALA GLY GLU GLU GLY SEQRES 8 A 150 MET ILE GLU ASP MET LYS LEU MET PHE ARG ASN ALA ARG SEQRES 9 A 150 HIS TYR ASN GLU GLU GLY SER GLN VAL TYR ASN ASP ALA SEQRES 10 A 150 HIS ILE LEU GLU LYS LEU LEU LYS GLU LYS ARG LYS GLU SEQRES 11 A 150 LEU GLY PRO LEU PRO ASP ASP ASP ASP MET ALA SER PRO SEQRES 12 A 150 ALA GLU ASN LEU TYR PHE GLN SEQRES 1 B 150 MET GLY ASP SER MET ILE SER SER ALA THR SER ASP THR SEQRES 2 B 150 GLY SER ALA LYS ARG LYS SER LYS LYS ASN ILE ARG LYS SEQRES 3 B 150 GLN ARG MET LYS ILE LEU PHE ASN VAL VAL LEU GLU ALA SEQRES 4 B 150 ARG GLU PRO GLY SER GLY ARG ARG LEU CYS ASP LEU PHE SEQRES 5 B 150 MET VAL LYS PRO SER LYS LYS ASP TYR PRO ASP TYR TYR SEQRES 6 B 150 LYS ILE ILE LEU GLU PRO MET ASP LEU LYS ILE ILE GLU SEQRES 7 B 150 HIS ASN ILE ARG ASN ASP LYS TYR ALA GLY GLU GLU GLY SEQRES 8 B 150 MET ILE GLU ASP MET LYS LEU MET PHE ARG ASN ALA ARG SEQRES 9 B 150 HIS TYR ASN GLU GLU GLY SER GLN VAL TYR ASN ASP ALA SEQRES 10 B 150 HIS ILE LEU GLU LYS LEU LEU LYS GLU LYS ARG LYS GLU SEQRES 11 B 150 LEU GLY PRO LEU PRO ASP ASP ASP ASP MET ALA SER PRO SEQRES 12 B 150 ALA GLU ASN LEU TYR PHE GLN HET NI A 1 1 HET NI A 3 1 HET NI A 4 1 HET NI B 2 1 HETNAM NI NICKEL (II) ION FORMUL 3 NI 4(NI 2+) FORMUL 7 HOH *78(H2 O) HELIX 1 1 ALA A 478 ALA A 501 1 24 HELIX 2 2 ARG A 509 MET A 515 5 7 HELIX 3 3 TYR A 523 ILE A 530 1 8 HELIX 4 4 ASP A 535 ASN A 545 1 11 HELIX 5 5 GLY A 550 ASN A 569 1 20 HELIX 6 6 SER A 573 GLY A 594 1 22 HELIX 7 7 SER B 482 GLU B 500 1 19 HELIX 8 8 ARG B 509 MET B 515 5 7 HELIX 9 9 TYR B 523 ILE B 530 1 8 HELIX 10 10 ASP B 535 ASN B 545 1 11 HELIX 11 11 GLY B 550 ASN B 569 1 20 HELIX 12 12 SER B 573 GLY B 594 1 22 LINK NI NI A 1 O HOH A 62 1555 1555 2.36 LINK NI NI A 1 O HOH A 63 1555 1555 1.90 LINK NI NI A 1 O HOH A 64 1555 1555 1.91 LINK NI NI A 1 O HOH A 68 1555 1555 2.11 LINK NI NI A 1 NE2 HIS A 567 1555 1555 2.12 LINK NI NI A 3 NE2 HIS A 541 1555 1555 2.17 LINK NI NI A 3 NZ LYS A 547 1555 1555 2.10 LINK NI NI A 4 NE2 HIS A 580 1555 1555 2.79 LINK NI NI A 4 NZ LYS A 584 1555 1555 2.63 LINK NI NI B 2 O HOH B 60 1555 1555 2.30 LINK NI NI B 2 O HOH B 61 1555 1555 2.04 LINK NI NI B 2 O HOH B 67 1555 1555 2.13 LINK NI NI B 2 NE2 HIS B 580 1555 1555 2.13 LINK NI NI B 2 NZ LYS B 584 1555 1555 1.88 SITE 1 AC1 6 HOH A 62 HOH A 63 HOH A 64 HOH A 68 SITE 2 AC1 6 HIS A 567 GLU B 588 SITE 1 AC2 2 HIS A 541 LYS A 547 SITE 1 AC3 3 HIS A 580 LYS A 584 PRO B 597 SITE 1 AC4 6 HOH B 60 HOH B 61 HOH B 67 GLU B 532 SITE 2 AC4 6 HIS B 580 LYS B 584 CRYST1 49.431 60.220 109.907 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020230 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016606 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009099 0.00000