HEADER OXYGEN TRANSPORT 31-AUG-11 3TM9 TITLE Y29A MUTANT OF VITREOSCILLA STERCORARIA HEMOGLOBIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIAL HEMOGLOBIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SOLUBLE CYTOCHROME O; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VITREOSCILLA STERCORARIA; SOURCE 3 ORGANISM_TAXID: 61; SOURCE 4 GENE: VHB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDH88 KEYWDS GLOBIN 8-HELIX FOLD, OXYGEN STORAGE, OXYGEN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR S.RATAKONDA,A.ANAND,K.DIKSHIT,B.C.STARK,A.J.HOWARD REVDAT 3 28-FEB-24 3TM9 1 REMARK SEQADV REVDAT 2 17-JUL-19 3TM9 1 REMARK REVDAT 1 16-APR-14 3TM9 0 JRNL AUTH S.RATAKONDA,A.ANAND,K.DIKSHIT,B.C.STARK,A.J.HOWARD JRNL TITL CRYSTALLOGRAPHIC STRUCTURE DETERMINATION OF B10 MUTANTS OF JRNL TITL 2 VITREOSCILLA HEMOGLOBIN: ROLE OF TYR29 (B10) IN THE JRNL TITL 3 STRUCTURE OF THE LIGAND-BINDING SITE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 215 2013 JRNL REFN ESSN 1744-3091 JRNL PMID 23519792 JRNL DOI 10.1107/S1744309112044818 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 20333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.760 REMARK 3 FREE R VALUE TEST SET COUNT : 1984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.1278 - 4.1420 1.00 1372 151 0.1826 0.2137 REMARK 3 2 4.1420 - 3.2888 1.00 1330 139 0.1631 0.1879 REMARK 3 3 3.2888 - 2.8734 1.00 1328 144 0.1725 0.2087 REMARK 3 4 2.8734 - 2.6108 1.00 1318 149 0.1495 0.1830 REMARK 3 5 2.6108 - 2.4238 1.00 1325 137 0.1485 0.1831 REMARK 3 6 2.4238 - 2.2809 1.00 1319 141 0.1431 0.1712 REMARK 3 7 2.2809 - 2.1667 1.00 1300 142 0.1457 0.1767 REMARK 3 8 2.1667 - 2.0724 1.00 1332 144 0.1614 0.2113 REMARK 3 9 2.0724 - 1.9927 0.99 1298 135 0.1750 0.2194 REMARK 3 10 1.9927 - 1.9239 0.99 1304 148 0.1917 0.2010 REMARK 3 11 1.9239 - 1.8638 0.99 1262 138 0.2036 0.2619 REMARK 3 12 1.8638 - 1.8105 0.98 1279 138 0.2341 0.2486 REMARK 3 13 1.8105 - 1.7628 0.98 1322 135 0.2356 0.2831 REMARK 3 14 1.7628 - 1.7198 0.97 1260 143 0.2542 0.3249 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 1270 REMARK 3 ANGLE : 1.481 1719 REMARK 3 CHIRALITY : 0.056 197 REMARK 3 PLANARITY : 0.009 212 REMARK 3 DIHEDRAL : 16.956 469 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5154 -28.3837 12.7403 REMARK 3 T TENSOR REMARK 3 T11: 0.1371 T22: 0.1879 REMARK 3 T33: 0.1341 T12: 0.0005 REMARK 3 T13: 0.0210 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.0543 L22: 0.2546 REMARK 3 L33: 0.1981 L12: -0.0899 REMARK 3 L13: 0.0030 L23: -0.1608 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: -0.0838 S13: -0.0543 REMARK 3 S21: -0.0269 S22: -0.1534 S23: -0.0289 REMARK 3 S31: 0.1471 S32: 0.0728 S33: -0.0559 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 36) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1881 -15.2668 12.3319 REMARK 3 T TENSOR REMARK 3 T11: 0.1599 T22: 0.1735 REMARK 3 T33: 0.1091 T12: 0.0617 REMARK 3 T13: 0.0075 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.2129 L22: 0.2187 REMARK 3 L33: 0.1151 L12: -0.1089 REMARK 3 L13: 0.1525 L23: -0.0337 REMARK 3 S TENSOR REMARK 3 S11: -0.0846 S12: -0.2026 S13: -0.0836 REMARK 3 S21: 0.1629 S22: 0.2179 S23: 0.0136 REMARK 3 S31: -0.2163 S32: -0.5511 S33: 0.0181 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 43) REMARK 3 ORIGIN FOR THE GROUP (A): -25.5589 -6.1710 4.2055 REMARK 3 T TENSOR REMARK 3 T11: 0.1824 T22: 0.1440 REMARK 3 T33: 0.1990 T12: 0.0245 REMARK 3 T13: 0.0226 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.0431 L22: 0.0394 REMARK 3 L33: 0.0199 L12: -0.0453 REMARK 3 L13: 0.0042 L23: 0.0060 REMARK 3 S TENSOR REMARK 3 S11: -0.0356 S12: -0.2038 S13: -0.0921 REMARK 3 S21: 0.0048 S22: 0.2281 S23: 0.0840 REMARK 3 S31: -0.1046 S32: -0.0599 S33: 0.0019 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 56) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5663 -15.9130 3.3862 REMARK 3 T TENSOR REMARK 3 T11: 0.2007 T22: 0.2053 REMARK 3 T33: 0.2638 T12: 0.0452 REMARK 3 T13: -0.0900 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.0129 L22: 0.0011 REMARK 3 L33: 0.0216 L12: -0.0024 REMARK 3 L13: -0.0097 L23: -0.0104 REMARK 3 S TENSOR REMARK 3 S11: 0.1152 S12: -0.1441 S13: 0.1142 REMARK 3 S21: -0.3128 S22: -0.0590 S23: 0.3634 REMARK 3 S31: 0.0154 S32: -0.1694 S33: -0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 67) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9758 -24.9461 4.8935 REMARK 3 T TENSOR REMARK 3 T11: 0.1317 T22: 0.1339 REMARK 3 T33: 0.1294 T12: 0.0036 REMARK 3 T13: 0.0221 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.0287 L22: 0.0195 REMARK 3 L33: 0.0100 L12: 0.0207 REMARK 3 L13: -0.0228 L23: -0.0045 REMARK 3 S TENSOR REMARK 3 S11: 0.0885 S12: -0.1098 S13: -0.0913 REMARK 3 S21: -0.1634 S22: 0.0030 S23: 0.0163 REMARK 3 S31: -0.0398 S32: 0.0060 S33: 0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 90) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0190 -19.4831 -5.4278 REMARK 3 T TENSOR REMARK 3 T11: 0.1043 T22: 0.0383 REMARK 3 T33: 0.1606 T12: 0.1367 REMARK 3 T13: -0.0224 T23: 0.1053 REMARK 3 L TENSOR REMARK 3 L11: 0.3234 L22: 0.5791 REMARK 3 L33: 0.3835 L12: 0.2051 REMARK 3 L13: -0.2089 L23: -0.0480 REMARK 3 S TENSOR REMARK 3 S11: -0.2132 S12: 0.2804 S13: -0.1323 REMARK 3 S21: -0.1753 S22: 0.4414 S23: -0.1935 REMARK 3 S31: -0.1384 S32: -0.3063 S33: 0.1135 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 115) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2800 -15.3610 13.9878 REMARK 3 T TENSOR REMARK 3 T11: 0.1616 T22: 0.0968 REMARK 3 T33: 0.1018 T12: 0.0327 REMARK 3 T13: -0.0050 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.2068 L22: 0.1386 REMARK 3 L33: 0.2325 L12: -0.0477 REMARK 3 L13: -0.0482 L23: 0.0591 REMARK 3 S TENSOR REMARK 3 S11: -0.0614 S12: -0.2447 S13: 0.0842 REMARK 3 S21: 0.0630 S22: -0.0051 S23: -0.1625 REMARK 3 S31: -0.2578 S32: -0.2420 S33: -0.0099 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 146) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0095 -14.4530 1.6259 REMARK 3 T TENSOR REMARK 3 T11: 0.1231 T22: 0.1327 REMARK 3 T33: 0.1465 T12: -0.0078 REMARK 3 T13: 0.0017 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 0.1599 L22: 0.1256 REMARK 3 L33: 0.0543 L12: -0.0982 REMARK 3 L13: -0.0331 L23: 0.0637 REMARK 3 S TENSOR REMARK 3 S11: 0.0324 S12: -0.0234 S13: 0.0113 REMARK 3 S21: -0.0015 S22: -0.1332 S23: -0.0922 REMARK 3 S31: -0.1860 S32: 0.2351 S33: -0.0098 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067650. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI111 - SAGITTAL SECOND CRYSTAL REMARK 200 OPTICS : SI(111) MONOCHROMATOR WITH REMARK 200 SAGITTALLY BENT SECOND CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : X-GEN REMARK 200 DATA SCALING SOFTWARE : X-GEN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20497 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 32.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.07070 REMARK 200 R SYM (I) : 0.07070 REMARK 200 FOR THE DATA SET : 11.0020 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 47.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.67 REMARK 200 R MERGE FOR SHELL (I) : 0.45370 REMARK 200 R SYM FOR SHELL (I) : 0.45370 REMARK 200 FOR SHELL : 1.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27 MG/ML PROTEIN IN 1.3M (NH4)2SO4, REMARK 280 0.05M NAH2P2O7, 3% ETHYLENE GLYCOL. NOT STREAK-SEEDED, PH 6.2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.59700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.21300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.59700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.21300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HO1 EDO A 205 O HOH A 366 1.56 REMARK 500 O HOH A 350 O HOH A 390 2.10 REMARK 500 O HOH A 366 O HOH A 405 2.10 REMARK 500 O HOH A 340 O HOH A 356 2.11 REMARK 500 O HOH A 362 O HOH A 388 2.13 REMARK 500 O SER A 50 O HOH A 386 2.14 REMARK 500 O HOH A 319 O HOH A 371 2.14 REMARK 500 O1 EDO A 203 O HOH A 348 2.16 REMARK 500 O HOH A 400 O HOH A 413 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 385 O HOH A 385 2555 1.46 REMARK 500 O HOH A 406 O HOH A 406 2556 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 45 37.50 -94.93 REMARK 500 GLU A 49 48.03 -94.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 85 NE2 REMARK 620 2 HEM A 201 NA 102.3 REMARK 620 3 HEM A 201 NB 94.0 89.0 REMARK 620 4 HEM A 201 NC 89.3 168.2 88.2 REMARK 620 5 HEM A 201 ND 97.3 90.0 168.6 90.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 213 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VHB RELATED DB: PDB REMARK 900 THE WILD-TYPE VITREOSCILLA HEMOGLOBIN STRUCTURE COMPLEXED WITH REMARK 900 AZIDE, AS DETERMINED BY TARRICONE ET AL. REMARK 900 RELATED ID: 3TLD RELATED DB: PDB REMARK 900 Y29F MUTANT OF THIS PROTEIN REMARK 900 RELATED ID: 3TM3 RELATED DB: PDB REMARK 900 WILD-TYPE VITREOSCILLA HEMOGLOBIN, AS DETERMINED HERE DBREF 3TM9 A 1 146 UNP P04252 BAHG_VITST 1 146 SEQADV 3TM9 ALA A 29 UNP P04252 TYR 29 ENGINEERED MUTATION SEQRES 1 A 146 MET LEU ASP GLN GLN THR ILE ASN ILE ILE LYS ALA THR SEQRES 2 A 146 VAL PRO VAL LEU LYS GLU HIS GLY VAL THR ILE THR THR SEQRES 3 A 146 THR PHE ALA LYS ASN LEU PHE ALA LYS HIS PRO GLU VAL SEQRES 4 A 146 ARG PRO LEU PHE ASP MET GLY ARG GLN GLU SER LEU GLU SEQRES 5 A 146 GLN PRO LYS ALA LEU ALA MET THR VAL LEU ALA ALA ALA SEQRES 6 A 146 GLN ASN ILE GLU ASN LEU PRO ALA ILE LEU PRO ALA VAL SEQRES 7 A 146 LYS LYS ILE ALA VAL LYS HIS CYS GLN ALA GLY VAL ALA SEQRES 8 A 146 ALA ALA HIS TYR PRO ILE VAL GLY GLN GLU LEU LEU GLY SEQRES 9 A 146 ALA ILE LYS GLU VAL LEU GLY ASP ALA ALA THR ASP ASP SEQRES 10 A 146 ILE LEU ASP ALA TRP GLY LYS ALA TYR GLY VAL ILE ALA SEQRES 11 A 146 ASP VAL PHE ILE GLN VAL GLU ALA ASP LEU TYR ALA GLN SEQRES 12 A 146 ALA VAL GLU HET HEM A 201 73 HET EDO A 202 10 HET EDO A 203 10 HET EDO A 204 10 HET EDO A 205 10 HET EDO A 206 10 HET EDO A 207 10 HET EDO A 208 10 HET EDO A 209 10 HET EDO A 210 10 HET EDO A 211 10 HET EDO A 212 10 HET EDO A 213 10 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM EDO 1,2-ETHANEDIOL HETSYN HEM HEME HETSYN EDO ETHYLENE GLYCOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 EDO 12(C2 H6 O2) FORMUL 15 HOH *114(H2 O) HELIX 1 1 ASP A 3 HIS A 20 1 18 HELIX 2 2 HIS A 20 HIS A 36 1 17 HELIX 3 3 PRO A 37 PHE A 43 5 7 HELIX 4 4 LEU A 51 ASN A 67 1 17 HELIX 5 5 ASN A 70 GLY A 89 1 20 HELIX 6 6 ALA A 91 ALA A 93 5 3 HELIX 7 7 HIS A 94 GLY A 111 1 18 HELIX 8 8 ASP A 112 ALA A 114 5 3 HELIX 9 9 THR A 115 ALA A 144 1 30 LINK NE2 HIS A 85 FE HEM A 201 1555 1555 2.19 SITE 1 AC1 16 LEU A 42 PHE A 43 GLN A 53 ALA A 56 SITE 2 AC1 16 LEU A 57 THR A 60 ILE A 81 LYS A 84 SITE 3 AC1 16 HIS A 85 TYR A 95 VAL A 98 TYR A 126 SITE 4 AC1 16 PHE A 133 HOH A 311 HOH A 407 HOH A 409 SITE 1 AC2 7 LYS A 107 THR A 115 ASP A 116 EDO A 207 SITE 2 AC2 7 HOH A 348 HOH A 352 HOH A 373 SITE 1 AC3 4 THR A 23 THR A 27 LYS A 30 VAL A 145 SITE 1 AC4 3 GLN A 4 GLN A 5 HOH A 366 SITE 1 AC5 2 LYS A 79 HOH A 389 SITE 1 AC6 7 THR A 27 LYS A 107 GLU A 108 GLY A 111 SITE 2 AC6 7 ASP A 112 EDO A 203 HOH A 364 SITE 1 AC7 4 PRO A 76 LYS A 79 HOH A 305 HOH A 378 SITE 1 AC8 4 GLY A 127 ASP A 131 EDO A 212 HOH A 387 SITE 1 AC9 2 MET A 1 GLN A 135 SITE 1 BC1 5 TYR A 95 GLY A 127 ASP A 131 EDO A 210 SITE 2 BC1 5 HOH A 377 SITE 1 BC2 1 HOH A 337 CRYST1 85.194 46.426 62.873 90.00 128.84 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011738 0.000000 0.009451 0.00000 SCALE2 0.000000 0.021540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020420 0.00000