HEADER TRANSFERASE/TRANSFERASE INHIBITOR 01-SEP-11 3TNH TITLE CDK9/CYCLIN T IN COMPLEX WITH CAN508 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIN-DEPENDENT KINASE 9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, UNP RESIDUES 2-330; COMPND 5 SYNONYM: C-2K, CELL DIVISION CYCLE 2-LIKE PROTEIN KINASE 4, CELL COMPND 6 DIVISION PROTEIN KINASE 9, SERINE/THREONINE-PROTEIN KINASE PITALRE; COMPND 7 EC: 2.7.11.22, 2.7.11.23; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CYCLIN-T1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: CYCLIN BOXES, UNP RESIDUES 1-259; COMPND 13 SYNONYM: CYCT1, CYCLIN-T; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDC2L4, CDK9; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULO VIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PVL1392; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: CCNT1; SOURCE 17 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 18 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULO VIRUS; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PVL1392 KEYWDS KINASE, CYCLIN, PHOSPHTRANSFER, CYCLIN T, PHOSPHORYLATED ON THREONINE KEYWDS 2 186, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.BAUMLI,A.J.HOLE,J.A.ENDICOTT REVDAT 5 27-NOV-24 3TNH 1 REMARK REVDAT 4 13-SEP-23 3TNH 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 3TNH 1 AUTHOR REVDAT 2 30-MAY-12 3TNH 1 JRNL REVDAT 1 15-FEB-12 3TNH 0 JRNL AUTH S.BAUMLI,A.J.HOLE,M.E.NOBLE,J.A.ENDICOTT JRNL TITL THE CDK9 C-HELIX EXHIBITS CONFORMATIONAL PLASTICITY THAT MAY JRNL TITL 2 EXPLAIN THE SELECTIVITY OF CAN508. JRNL REF ACS CHEM.BIOL. V. 7 811 2012 JRNL REFN ISSN 1554-8929 JRNL PMID 22292676 JRNL DOI 10.1021/CB2004516 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2682 - 5.8132 0.99 2820 151 0.1871 0.2351 REMARK 3 2 5.8132 - 4.6166 1.00 2818 162 0.1537 0.1993 REMARK 3 3 4.6166 - 4.0338 1.00 2837 138 0.1384 0.1852 REMARK 3 4 4.0338 - 3.6653 1.00 2839 150 0.1774 0.2285 REMARK 3 5 3.6653 - 3.4028 1.00 2808 162 0.2119 0.2718 REMARK 3 6 3.4028 - 3.2023 1.00 2867 132 0.2585 0.3179 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 68.03 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.760 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.06840 REMARK 3 B22 (A**2) : -4.06840 REMARK 3 B33 (A**2) : 8.13670 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4456 REMARK 3 ANGLE : 1.526 6043 REMARK 3 CHIRALITY : 0.092 680 REMARK 3 PLANARITY : 0.008 762 REMARK 3 DIHEDRAL : 13.275 1657 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 1:105)) REMARK 3 ORIGIN FOR THE GROUP (A): 47.6159 -11.5630 -20.0382 REMARK 3 T TENSOR REMARK 3 T11: 0.5716 T22: 0.6543 REMARK 3 T33: 0.6658 T12: 0.1744 REMARK 3 T13: -0.0167 T23: -0.0634 REMARK 3 L TENSOR REMARK 3 L11: 6.9716 L22: 1.8366 REMARK 3 L33: 4.0327 L12: 2.4351 REMARK 3 L13: 0.9469 L23: 0.2887 REMARK 3 S TENSOR REMARK 3 S11: 0.0441 S12: 0.2101 S13: -0.7133 REMARK 3 S21: -0.2293 S22: 0.0533 S23: -0.5197 REMARK 3 S31: 0.4984 S32: 0.6026 S33: -0.1177 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND ((RESSEQ 1:259)) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4817 3.3241 -20.6793 REMARK 3 T TENSOR REMARK 3 T11: 0.4328 T22: 0.6481 REMARK 3 T33: 0.5975 T12: -0.0647 REMARK 3 T13: -0.1510 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 3.9529 L22: 3.3865 REMARK 3 L33: 2.3688 L12: -1.9729 REMARK 3 L13: -0.9846 L23: 0.3051 REMARK 3 S TENSOR REMARK 3 S11: -0.0656 S12: -0.1291 S13: 0.6086 REMARK 3 S21: 0.1240 S22: 0.0834 S23: -0.0996 REMARK 3 S31: -0.2431 S32: 0.0420 S33: -0.0194 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 106:330)) REMARK 3 ORIGIN FOR THE GROUP (A): 48.5663 -19.2985 5.8610 REMARK 3 T TENSOR REMARK 3 T11: 1.0566 T22: 0.5277 REMARK 3 T33: 0.7988 T12: -0.1894 REMARK 3 T13: -0.0417 T23: 0.0781 REMARK 3 L TENSOR REMARK 3 L11: 3.7230 L22: 5.9653 REMARK 3 L33: 5.6435 L12: -1.7959 REMARK 3 L13: 1.2730 L23: -0.5160 REMARK 3 S TENSOR REMARK 3 S11: 0.2497 S12: -0.3454 S13: -0.7076 REMARK 3 S21: 1.4168 S22: -0.2509 S23: 0.7267 REMARK 3 S31: 1.3499 S32: -0.0181 S33: 0.0036 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TNH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : ACCEL FIXED EXIT DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17892 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 49.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY REFINEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3BLH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 1K, 100MM NA K PHOSPHATE, REMARK 280 600MM NACL, 4MM TCEP, PH 6.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 86.65000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 50.02740 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.40667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 86.65000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 50.02740 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.40667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 86.65000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 50.02740 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.40667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 100.05480 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 64.81333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 100.05480 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 64.81333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 100.05480 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 64.81333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 PRO A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 GLN A 4 REMARK 465 TYR A 5 REMARK 465 ASP A 6 REMARK 465 SER A 7 REMARK 465 LYS A 88 REMARK 465 ALA A 89 REMARK 465 SER A 90 REMARK 465 PRO A 91 REMARK 465 TYR A 92 REMARK 465 ASN A 93 REMARK 465 ARG A 94 REMARK 465 CYS A 95 REMARK 465 LYS A 96 REMARK 465 GLY A 97 REMARK 465 LEU A 176 REMARK 465 ALA A 177 REMARK 465 LYS A 178 REMARK 465 ASN A 179 REMARK 465 SER A 180 REMARK 465 GLN A 181 REMARK 465 PRO A 182 REMARK 465 TYR A 259 REMARK 465 GLU A 260 REMARK 465 LEU A 261 REMARK 465 TYR A 262 REMARK 465 GLU A 263 REMARK 465 LYS A 264 REMARK 465 LEU A 265 REMARK 465 GLU A 266 REMARK 465 LEU A 267 REMARK 465 VAL A 268 REMARK 465 LYS A 269 REMARK 465 GLY A 270 REMARK 465 GLN A 271 REMARK 465 LYS A 272 REMARK 465 ARG A 273 REMARK 465 SER A 329 REMARK 465 THR A 330 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLY B 3 REMARK 465 GLU B 4 REMARK 465 ARG B 5 REMARK 465 LYS B 6 REMARK 465 ASN B 7 REMARK 465 ASN B 8 REMARK 465 PRO B 213 REMARK 465 VAL B 214 REMARK 465 SER B 215 REMARK 465 THR B 216 REMARK 465 ASP B 217 REMARK 465 GLY B 218 REMARK 465 LYS B 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 11 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 LEU A 170 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 10 60.97 -154.10 REMARK 500 PHE A 30 5.17 86.29 REMARK 500 ASP A 149 41.72 -143.72 REMARK 500 ASP A 167 76.91 64.77 REMARK 500 VAL A 190 129.21 82.57 REMARK 500 ASP A 205 64.69 -111.50 REMARK 500 SER A 226 139.00 -170.69 REMARK 500 GLN A 230 68.44 -104.61 REMARK 500 ASN A 255 4.54 86.65 REMARK 500 ARG A 284 -51.62 75.04 REMARK 500 LEU A 296 48.05 -86.11 REMARK 500 LYS A 325 -63.19 -127.06 REMARK 500 THR B 121 5.39 -62.56 REMARK 500 PHE B 146 15.27 57.52 REMARK 500 LEU B 163 21.12 -71.94 REMARK 500 ASN B 250 -7.98 72.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F18 A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TNI RELATED DB: PDB REMARK 900 RELATED ID: 3TNW RELATED DB: PDB DBREF 3TNH A 2 330 UNP P50750 CDK9_HUMAN 2 330 DBREF 3TNH B 1 259 UNP O60563 CCNT1_HUMAN 1 259 SEQADV 3TNH GLY A 0 UNP P50750 EXPRESSION TAG SEQADV 3TNH PRO A 1 UNP P50750 EXPRESSION TAG SEQADV 3TNH LEU B 241 UNP O60563 PHE 241 ENGINEERED MUTATION SEQRES 1 A 331 GLY PRO ALA LYS GLN TYR ASP SER VAL GLU CYS PRO PHE SEQRES 2 A 331 CYS ASP GLU VAL SER LYS TYR GLU LYS LEU ALA LYS ILE SEQRES 3 A 331 GLY GLN GLY THR PHE GLY GLU VAL PHE LYS ALA ARG HIS SEQRES 4 A 331 ARG LYS THR GLY GLN LYS VAL ALA LEU LYS LYS VAL LEU SEQRES 5 A 331 MET GLU ASN GLU LYS GLU GLY PHE PRO ILE THR ALA LEU SEQRES 6 A 331 ARG GLU ILE LYS ILE LEU GLN LEU LEU LYS HIS GLU ASN SEQRES 7 A 331 VAL VAL ASN LEU ILE GLU ILE CYS ARG THR LYS ALA SER SEQRES 8 A 331 PRO TYR ASN ARG CYS LYS GLY SER ILE TYR LEU VAL PHE SEQRES 9 A 331 ASP PHE CYS GLU HIS ASP LEU ALA GLY LEU LEU SER ASN SEQRES 10 A 331 VAL LEU VAL LYS PHE THR LEU SER GLU ILE LYS ARG VAL SEQRES 11 A 331 MET GLN MET LEU LEU ASN GLY LEU TYR TYR ILE HIS ARG SEQRES 12 A 331 ASN LYS ILE LEU HIS ARG ASP MET LYS ALA ALA ASN VAL SEQRES 13 A 331 LEU ILE THR ARG ASP GLY VAL LEU LYS LEU ALA ASP PHE SEQRES 14 A 331 GLY LEU ALA ARG ALA PHE SER LEU ALA LYS ASN SER GLN SEQRES 15 A 331 PRO ASN ARG TYR TPO ASN ARG VAL VAL THR LEU TRP TYR SEQRES 16 A 331 ARG PRO PRO GLU LEU LEU LEU GLY GLU ARG ASP TYR GLY SEQRES 17 A 331 PRO PRO ILE ASP LEU TRP GLY ALA GLY CYS ILE MET ALA SEQRES 18 A 331 GLU MET TRP THR ARG SER PRO ILE MET GLN GLY ASN THR SEQRES 19 A 331 GLU GLN HIS GLN LEU ALA LEU ILE SER GLN LEU CYS GLY SEQRES 20 A 331 SER ILE THR PRO GLU VAL TRP PRO ASN VAL ASP ASN TYR SEQRES 21 A 331 GLU LEU TYR GLU LYS LEU GLU LEU VAL LYS GLY GLN LYS SEQRES 22 A 331 ARG LYS VAL LYS ASP ARG LEU LYS ALA TYR VAL ARG ASP SEQRES 23 A 331 PRO TYR ALA LEU ASP LEU ILE ASP LYS LEU LEU VAL LEU SEQRES 24 A 331 ASP PRO ALA GLN ARG ILE ASP SER ASP ASP ALA LEU ASN SEQRES 25 A 331 HIS ASP PHE PHE TRP SER ASP PRO MET PRO SER ASP LEU SEQRES 26 A 331 LYS GLY MET LEU SER THR SEQRES 1 B 259 MET GLU GLY GLU ARG LYS ASN ASN ASN LYS ARG TRP TYR SEQRES 2 B 259 PHE THR ARG GLU GLN LEU GLU ASN SER PRO SER ARG ARG SEQRES 3 B 259 PHE GLY VAL ASP PRO ASP LYS GLU LEU SER TYR ARG GLN SEQRES 4 B 259 GLN ALA ALA ASN LEU LEU GLN ASP MET GLY GLN ARG LEU SEQRES 5 B 259 ASN VAL SER GLN LEU THR ILE ASN THR ALA ILE VAL TYR SEQRES 6 B 259 MET HIS ARG PHE TYR MET ILE GLN SER PHE THR GLN PHE SEQRES 7 B 259 PRO GLY ASN SER VAL ALA PRO ALA ALA LEU PHE LEU ALA SEQRES 8 B 259 ALA LYS VAL GLU GLU GLN PRO LYS LYS LEU GLU HIS VAL SEQRES 9 B 259 ILE LYS VAL ALA HIS THR CYS LEU HIS PRO GLN GLU SER SEQRES 10 B 259 LEU PRO ASP THR ARG SER GLU ALA TYR LEU GLN GLN VAL SEQRES 11 B 259 GLN ASP LEU VAL ILE LEU GLU SER ILE ILE LEU GLN THR SEQRES 12 B 259 LEU GLY PHE GLU LEU THR ILE ASP HIS PRO HIS THR HIS SEQRES 13 B 259 VAL VAL LYS CYS THR GLN LEU VAL ARG ALA SER LYS ASP SEQRES 14 B 259 LEU ALA GLN THR SER TYR PHE MET ALA THR ASN SER LEU SEQRES 15 B 259 HIS LEU THR THR PHE SER LEU GLN TYR THR PRO PRO VAL SEQRES 16 B 259 VAL ALA CYS VAL CYS ILE HIS LEU ALA CYS LYS TRP SER SEQRES 17 B 259 ASN TRP GLU ILE PRO VAL SER THR ASP GLY LYS HIS TRP SEQRES 18 B 259 TRP GLU TYR VAL ASP ALA THR VAL THR LEU GLU LEU LEU SEQRES 19 B 259 ASP GLU LEU THR HIS GLU LEU LEU GLN ILE LEU GLU LYS SEQRES 20 B 259 THR PRO ASN ARG LEU LYS ARG ILE TRP ASN TRP ARG MODRES 3TNH TPO A 186 THR PHOSPHOTHREONINE HET TPO A 186 11 HET F18 A 400 16 HETNAM TPO PHOSPHOTHREONINE HETNAM F18 4-[(E)-(3,5-DIAMINO-1H-PYRAZOL-4-YL)DIAZENYL]PHENOL HETSYN TPO PHOSPHONOTHREONINE HETSYN F18 CAN508 FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 F18 C9 H10 N6 O HELIX 1 1 GLU A 15 SER A 17 5 3 HELIX 2 2 GLY A 26 PHE A 30 5 5 HELIX 3 3 PRO A 60 LEU A 73 1 14 HELIX 4 4 LEU A 110 SER A 115 1 6 HELIX 5 5 THR A 122 ASN A 143 1 22 HELIX 6 6 LYS A 151 ALA A 153 5 3 HELIX 7 7 THR A 191 ARG A 195 5 5 HELIX 8 8 PRO A 196 LEU A 201 1 6 HELIX 9 9 PRO A 208 ARG A 225 1 18 HELIX 10 10 THR A 233 GLY A 246 1 14 HELIX 11 11 VAL A 275 ALA A 281 1 7 HELIX 12 12 ASP A 285 LEU A 296 1 12 HELIX 13 13 ASP A 305 HIS A 312 1 8 HELIX 14 14 ASP A 313 TRP A 316 5 4 HELIX 15 15 THR B 15 ASN B 21 1 7 HELIX 16 16 SER B 22 PHE B 27 1 6 HELIX 17 17 ASP B 30 LEU B 52 1 23 HELIX 18 18 SER B 55 TYR B 70 1 16 HELIX 19 19 PRO B 79 GLU B 95 1 17 HELIX 20 20 LYS B 100 HIS B 113 1 14 HELIX 21 21 SER B 123 LEU B 144 1 22 HELIX 22 22 HIS B 152 LEU B 163 1 12 HELIX 23 23 SER B 167 THR B 185 1 19 HELIX 24 24 THR B 186 GLN B 190 5 5 HELIX 25 25 THR B 192 SER B 208 1 17 HELIX 26 26 HIS B 220 VAL B 225 5 6 HELIX 27 27 THR B 230 THR B 248 1 19 HELIX 28 28 ARG B 251 TRP B 256 5 6 SHEET 1 A 5 TYR A 19 LYS A 24 0 SHEET 2 A 5 VAL A 33 HIS A 38 -1 O LYS A 35 N LEU A 22 SHEET 3 A 5 LYS A 44 LYS A 49 -1 O VAL A 45 N ALA A 36 SHEET 4 A 5 TYR A 100 ASP A 104 -1 O PHE A 103 N ALA A 46 SHEET 5 A 5 LEU A 81 CYS A 85 -1 N CYS A 85 O TYR A 100 SHEET 1 B 3 HIS A 108 ASP A 109 0 SHEET 2 B 3 VAL A 155 ILE A 157 -1 O ILE A 157 N HIS A 108 SHEET 3 B 3 LEU A 163 LEU A 165 -1 O LYS A 164 N LEU A 156 SHEET 1 C 2 ILE A 145 LEU A 146 0 SHEET 2 C 2 ARG A 172 ALA A 173 -1 O ARG A 172 N LEU A 146 LINK C TYR A 185 N TPO A 186 1555 1555 1.33 LINK C TPO A 186 N ASN A 187 1555 1555 1.34 CISPEP 1 ILE A 25 GLY A 26 0 3.64 CISPEP 2 ASP A 318 PRO A 319 0 -2.32 SITE 1 AC1 9 ALA A 46 LYS A 48 GLU A 66 PHE A 103 SITE 2 AC1 9 ASP A 104 CYS A 106 LEU A 156 ASP A 167 SITE 3 AC1 9 PHE A 168 CRYST1 173.300 173.300 97.220 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005770 0.003332 0.000000 0.00000 SCALE2 0.000000 0.006663 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010286 0.00000