data_3TOH # _entry.id 3TOH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3TOH pdb_00003toh 10.2210/pdb3toh/pdb RCSB RCSB067724 ? ? WWPDB D_1000067724 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3TOH _pdbx_database_status.recvd_initial_deposition_date 2011-09-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Geremia, S.' 1 'Olajuyigbe, F.M.' 2 'Demitri, N.' 3 # _citation.id primary _citation.title 'Developing HIV-1 Protease Inhibitors through Stereospecific Reactions in Protein Crystals.' _citation.journal_abbrev Molecules _citation.journal_volume 21 _citation.page_first ? _citation.page_last ? _citation.year 2016 _citation.journal_id_ASTM ? _citation.country CH _citation.journal_id_ISSN 1420-3049 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27809253 _citation.pdbx_database_id_DOI 10.3390/molecules21111458 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Olajuyigbe, F.M.' 1 ? primary 'Demitri, N.' 2 ? primary 'De Zorzi, R.' 3 ? primary 'Geremia, S.' 4 ? # _cell.entry_id 3TOH _cell.length_a 51.268 _cell.length_b 58.377 _cell.length_c 61.300 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3TOH _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Gag-Pol polyprotein' 10740.677 2 '3.4.23.16, 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2' 'Q507K L533I L563I C567A C595A' 'UNP Residues 501-599' ? 2 non-polymer syn '(S)-N-((2S,3S,4R,5R)-4-amino-3,5-dihydroxy-1,6-diphenylhexan-2-yl)-3-methyl-2-(2-phenoxyacetamido)butanamide' 533.658 1 ? ? ? ? 3 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 3 ? ? ? ? 4 water nat water 18.015 183 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Pr160Gag-Pol, Matrix protein p17, MA, Capsid protein p24, CA, Spacer peptide p2, Nucleocapsid protein p7, NC, Transframe peptide, TF, p6-pol, p6*, Protease, PR, Retropepsin, Reverse transcriptase/ribonuclease H, Exoribonuclease H, p66 RT, p51 RT, p15, Integrase, IN ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF ; _entity_poly.pdbx_seq_one_letter_code_can ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ILE n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 LYS n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 ILE n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 SER n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 ARG n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 ILE n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 ALA n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 VAL n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 ALA n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HIV-1 _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene gag-pol _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus type 1 (BRU ISOLATE)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11686 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_HV1BR _struct_ref.pdbx_db_accession P03367 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _struct_ref.pdbx_align_begin 501 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3TOH A 1 ? 99 ? P03367 501 ? 599 ? 1 99 2 1 3TOH B 1 ? 99 ? P03367 501 ? 599 ? 1 99 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3TOH LYS A 7 ? UNP P03367 GLN 507 'engineered mutation' 7 1 1 3TOH ILE A 33 ? UNP P03367 LEU 533 'engineered mutation' 33 2 1 3TOH ILE A 63 ? UNP P03367 LEU 563 'engineered mutation' 63 3 1 3TOH ALA A 67 ? UNP P03367 CYS 567 'engineered mutation' 67 4 1 3TOH ALA A 95 ? UNP P03367 CYS 595 'engineered mutation' 95 5 2 3TOH LYS B 7 ? UNP P03367 GLN 507 'engineered mutation' 7 6 2 3TOH ILE B 33 ? UNP P03367 LEU 533 'engineered mutation' 33 7 2 3TOH ILE B 63 ? UNP P03367 LEU 563 'engineered mutation' 63 8 2 3TOH ALA B 67 ? UNP P03367 CYS 567 'engineered mutation' 67 9 2 3TOH ALA B 95 ? UNP P03367 CYS 595 'engineered mutation' 95 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 079 peptide-like . '(S)-N-((2S,3S,4R,5R)-4-amino-3,5-dihydroxy-1,6-diphenylhexan-2-yl)-3-methyl-2-(2-phenoxyacetamido)butanamide' ? 'C31 H39 N3 O5' 533.658 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3TOH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_percent_sol 42.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9 _exptl_crystal_grow.pdbx_details ;Ammonium sulfate 40%, DMSO 10%, sodium citrate 0.25M. pH has been increased through ammonia diffusion, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2008-06-11 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ELETTRA BEAMLINE 5.2R' _diffrn_source.pdbx_synchrotron_site ELETTRA _diffrn_source.pdbx_synchrotron_beamline 5.2R _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3TOH _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 42.26 _reflns.d_resolution_high 1.116 _reflns.number_obs 69731 _reflns.number_all 57890 _reflns.percent_possible_obs 95.7 _reflns.pdbx_Rmerge_I_obs 0.047 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.116 _reflns_shell.d_res_low 1.17 _reflns_shell.percent_possible_all 83.7 _reflns_shell.Rmerge_I_obs 0.391 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.9 _reflns_shell.pdbx_redundancy 2.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3TOH _refine.ls_number_reflns_obs 66936 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.26 _refine.ls_d_res_high 1.116 _refine.ls_percent_reflns_obs 96.77 _refine.ls_R_factor_obs 0.17822 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17683 _refine.ls_R_factor_R_free 0.21139 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.0 _refine.ls_number_reflns_R_free 2796 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.B_iso_mean 12.477 _refine.aniso_B[1][1] -0.52 _refine.aniso_B[2][2] 0.08 _refine.aniso_B[3][3] 0.43 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 2NMZ' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.039 _refine.overall_SU_ML 0.023 _refine.overall_SU_B 1.083 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.038 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1512 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.number_atoms_solvent 183 _refine_hist.number_atoms_total 1746 _refine_hist.d_res_high 1.116 _refine_hist.d_res_low 42.26 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.012 0.022 ? 1624 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.486 2.015 ? 2202 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.004 5.000 ? 206 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 41.552 24.340 ? 53 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 12.496 15.000 ? 297 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 19.082 15.000 ? 9 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.095 0.200 ? 266 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.007 0.020 ? 1156 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined 0.196 0.200 ? 703 ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined 0.313 0.200 ? 1131 ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined 0.157 0.200 ? 126 ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined 0.203 0.200 ? 56 ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined 0.349 0.200 ? 15 ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1.588 1.500 ? 1035 ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it 2.181 2.000 ? 1628 ? 'X-RAY DIFFRACTION' r_scbond_it 3.016 3.000 ? 670 ? 'X-RAY DIFFRACTION' r_scangle_it 4.460 4.500 ? 570 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 1.587 3.000 ? 1705 ? 'X-RAY DIFFRACTION' r_sphericity_free 5.956 3.000 ? 183 ? 'X-RAY DIFFRACTION' r_sphericity_bonded 3.834 3.000 ? 1594 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.116 _refine_ls_shell.d_res_low 1.145 _refine_ls_shell.number_reflns_R_work 4635 _refine_ls_shell.R_factor_R_work 0.308 _refine_ls_shell.percent_reflns_obs 91.59 _refine_ls_shell.R_factor_R_free 0.333 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 179 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3TOH _struct.title 'HIV-1 Protease - Epoxydic Inhibitor Complex (pH 9 - Orthorombic Crystal form P212121)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3TOH _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'HIV PR, epoxide, in-crystal reaction, hydrolase, HYDROLASE-HYDROLASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? THR A 91 ? GLY A 86 THR A 91 1 ? 6 HELX_P HELX_P2 2 GLY B 86 ? THR B 91 ? GLY B 86 THR B 91 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? ILE A 3 ? GLN A 2 ILE A 3 A 2 THR B 96 ? ASN B 98 ? THR B 96 ASN B 98 A 3 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 A 4 GLN B 2 ? ILE B 3 ? GLN B 2 ILE B 3 B 1 LYS A 43 ? GLY A 49 ? LYS A 43 GLY A 49 B 2 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 B 3 HIS A 69 ? GLY A 78 ? HIS A 69 GLY A 78 B 4 VAL A 32 ? GLU A 34 ? VAL A 32 GLU A 34 B 5 ILE A 84 ? ILE A 85 ? ILE A 84 ILE A 85 B 6 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 B 7 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 8 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 C 1 TRP B 42 ? GLY B 49 ? TRP B 42 GLY B 49 C 2 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 C 3 HIS B 69 ? VAL B 77 ? HIS B 69 VAL B 77 C 4 VAL B 32 ? ILE B 33 ? VAL B 32 ILE B 33 C 5 ILE B 84 ? ILE B 85 ? ILE B 84 ILE B 85 C 6 GLN B 18 ? LEU B 24 ? GLN B 18 LEU B 24 C 7 LEU B 10 ? ILE B 15 ? LEU B 10 ILE B 15 C 8 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 3 ? N ILE A 3 O LEU B 97 ? O LEU B 97 A 2 3 O ASN B 98 ? O ASN B 98 N THR A 96 ? N THR A 96 A 3 4 N LEU A 97 ? N LEU A 97 O ILE B 3 ? O ILE B 3 B 1 2 N LYS A 43 ? N LYS A 43 O GLN A 58 ? O GLN A 58 B 2 3 N ILE A 66 ? N ILE A 66 O HIS A 69 ? O HIS A 69 B 3 4 O LEU A 76 ? O LEU A 76 N ILE A 33 ? N ILE A 33 B 4 5 N VAL A 32 ? N VAL A 32 O ILE A 84 ? O ILE A 84 B 5 6 O ILE A 85 ? O ILE A 85 N LEU A 23 ? N LEU A 23 B 6 7 O LYS A 20 ? O LYS A 20 N ILE A 13 ? N ILE A 13 B 7 8 N LYS A 14 ? N LYS A 14 O GLU A 65 ? O GLU A 65 C 1 2 N LYS B 43 ? N LYS B 43 O GLN B 58 ? O GLN B 58 C 2 3 N TYR B 59 ? N TYR B 59 O VAL B 75 ? O VAL B 75 C 3 4 O LEU B 76 ? O LEU B 76 N ILE B 33 ? N ILE B 33 C 4 5 N VAL B 32 ? N VAL B 32 O ILE B 84 ? O ILE B 84 C 5 6 O ILE B 85 ? O ILE B 85 N LEU B 23 ? N LEU B 23 C 6 7 O LYS B 20 ? O LYS B 20 N ILE B 13 ? N ILE B 13 C 7 8 N LYS B 14 ? N LYS B 14 O GLU B 65 ? O GLU B 65 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 079 100 ? 14 'BINDING SITE FOR RESIDUE 079 A 100' AC2 Software A DMS 101 ? 5 'BINDING SITE FOR RESIDUE DMS A 101' AC3 Software A DMS 102 ? 3 'BINDING SITE FOR RESIDUE DMS A 102' AC4 Software B DMS 100 ? 7 'BINDING SITE FOR RESIDUE DMS B 100' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 TRP A 6 ? TRP A 6 . ? 3_655 ? 2 AC1 14 ASP A 25 ? ASP A 25 . ? 1_555 ? 3 AC1 14 GLY A 27 ? GLY A 27 . ? 1_555 ? 4 AC1 14 ALA A 28 ? ALA A 28 . ? 1_555 ? 5 AC1 14 ASP A 29 ? ASP A 29 . ? 1_555 ? 6 AC1 14 GLY A 48 ? GLY A 48 . ? 1_555 ? 7 AC1 14 GLY A 49 ? GLY A 49 . ? 1_555 ? 8 AC1 14 PRO A 81 ? PRO A 81 . ? 1_555 ? 9 AC1 14 ARG B 8 ? ARG B 8 . ? 1_555 ? 10 AC1 14 ASP B 25 ? ASP B 25 . ? 1_555 ? 11 AC1 14 GLY B 27 ? GLY B 27 . ? 1_555 ? 12 AC1 14 GLY B 49 ? GLY B 49 . ? 1_555 ? 13 AC1 14 ILE B 50 ? ILE B 50 . ? 1_555 ? 14 AC1 14 VAL B 82 ? VAL B 82 . ? 1_555 ? 15 AC2 5 LYS A 14 ? LYS A 14 . ? 1_555 ? 16 AC2 5 ILE A 15 ? ILE A 15 . ? 1_555 ? 17 AC2 5 GLY A 16 ? GLY A 16 . ? 1_555 ? 18 AC2 5 GLY A 17 ? GLY A 17 . ? 1_555 ? 19 AC2 5 ILE A 63 ? ILE A 63 . ? 1_555 ? 20 AC3 3 LYS A 45 ? LYS A 45 . ? 1_555 ? 21 AC3 3 MET A 46 ? MET A 46 . ? 1_555 ? 22 AC3 3 GLN B 92 ? GLN B 92 . ? 3_655 ? 23 AC4 7 GLY A 17 ? GLY A 17 . ? 1_655 ? 24 AC4 7 LYS B 14 ? LYS B 14 . ? 1_555 ? 25 AC4 7 ILE B 15 ? ILE B 15 . ? 1_555 ? 26 AC4 7 GLY B 16 ? GLY B 16 . ? 1_555 ? 27 AC4 7 GLY B 17 ? GLY B 17 . ? 1_555 ? 28 AC4 7 ILE B 63 ? ILE B 63 . ? 1_555 ? 29 AC4 7 GLU B 65 ? GLU B 65 . ? 1_555 ? # _database_PDB_matrix.entry_id 3TOH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3TOH _atom_sites.fract_transf_matrix[1][1] 0.019505 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017130 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016313 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 1 1 PRO 1 1 1 PRO PRO B . n B 1 2 GLN 2 2 2 GLN GLN B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 THR 4 4 4 THR THR B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 TRP 6 6 6 TRP TRP B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 ARG 8 8 8 ARG ARG B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 VAL 11 11 11 VAL VAL B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 ILE 15 15 15 ILE ILE B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 GLN 18 18 18 GLN GLN B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 LYS 20 20 20 LYS LYS B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 ASP 25 25 25 ASP ASP B . n B 1 26 THR 26 26 26 THR THR B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 ALA 28 28 28 ALA ALA B . n B 1 29 ASP 29 29 29 ASP ASP B . n B 1 30 ASP 30 30 30 ASP ASP B . n B 1 31 THR 31 31 31 THR THR B . n B 1 32 VAL 32 32 32 VAL VAL B . n B 1 33 ILE 33 33 33 ILE ILE B . n B 1 34 GLU 34 34 34 GLU GLU B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 MET 36 36 36 MET MET B . n B 1 37 SER 37 37 37 SER SER B . n B 1 38 LEU 38 38 38 LEU LEU B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 ARG 41 41 41 ARG ARG B . n B 1 42 TRP 42 42 42 TRP TRP B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 PRO 44 44 44 PRO PRO B . n B 1 45 LYS 45 45 45 LYS LYS B . n B 1 46 MET 46 46 46 MET MET B . n B 1 47 ILE 47 47 47 ILE ILE B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 ILE 50 50 50 ILE ILE B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 PHE 53 53 53 PHE PHE B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 VAL 56 56 56 VAL VAL B . n B 1 57 ARG 57 57 57 ARG ARG B . n B 1 58 GLN 58 58 58 GLN GLN B . n B 1 59 TYR 59 59 59 TYR TYR B . n B 1 60 ASP 60 60 60 ASP ASP B . n B 1 61 GLN 61 61 61 GLN GLN B . n B 1 62 ILE 62 62 62 ILE ILE B . n B 1 63 ILE 63 63 63 ILE ILE B . n B 1 64 ILE 64 64 64 ILE ILE B . n B 1 65 GLU 65 65 65 GLU GLU B . n B 1 66 ILE 66 66 66 ILE ILE B . n B 1 67 ALA 67 67 67 ALA ALA B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 HIS 69 69 69 HIS HIS B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 ALA 71 71 71 ALA ALA B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 PRO 79 79 79 PRO PRO B . n B 1 80 THR 80 80 80 THR THR B . n B 1 81 PRO 81 81 81 PRO PRO B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 ASN 83 83 83 ASN ASN B . n B 1 84 ILE 84 84 84 ILE ILE B . n B 1 85 ILE 85 85 85 ILE ILE B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 ARG 87 87 87 ARG ARG B . n B 1 88 ASN 88 88 88 ASN ASN B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 THR 91 91 91 THR THR B . n B 1 92 GLN 92 92 92 GLN GLN B . n B 1 93 ILE 93 93 93 ILE ILE B . n B 1 94 GLY 94 94 94 GLY GLY B . n B 1 95 ALA 95 95 95 ALA ALA B . n B 1 96 THR 96 96 96 THR THR B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 ASN 98 98 98 ASN ASN B . n B 1 99 PHE 99 99 99 PHE PHE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 079 1 100 1 079 EPR A . D 3 DMS 1 101 2 DMS DMS A . E 3 DMS 1 102 3 DMS DMS A . F 3 DMS 1 100 1 DMS DMS B . G 4 HOH 1 201 103 HOH HOH A . G 4 HOH 2 202 104 HOH HOH A . G 4 HOH 3 203 105 HOH HOH A . G 4 HOH 4 204 106 HOH HOH A . G 4 HOH 5 205 107 HOH HOH A . G 4 HOH 6 206 108 HOH HOH A . G 4 HOH 7 207 109 HOH HOH A . G 4 HOH 8 208 110 HOH HOH A . G 4 HOH 9 209 111 HOH HOH A . G 4 HOH 10 210 112 HOH HOH A . G 4 HOH 11 211 2 HOH HOH A . G 4 HOH 12 212 3 HOH HOH A . G 4 HOH 13 213 5 HOH HOH A . G 4 HOH 14 214 6 HOH HOH A . G 4 HOH 15 215 117 HOH HOH A . G 4 HOH 16 216 8 HOH HOH A . G 4 HOH 17 217 12 HOH HOH A . G 4 HOH 18 218 17 HOH HOH A . G 4 HOH 19 219 121 HOH HOH A . G 4 HOH 20 220 18 HOH HOH A . G 4 HOH 21 221 20 HOH HOH A . G 4 HOH 22 222 124 HOH HOH A . G 4 HOH 23 223 125 HOH HOH A . G 4 HOH 24 224 126 HOH HOH A . G 4 HOH 25 225 21 HOH HOH A . G 4 HOH 26 226 23 HOH HOH A . G 4 HOH 27 227 26 HOH HOH A . G 4 HOH 28 228 28 HOH HOH A . G 4 HOH 29 229 131 HOH HOH A . G 4 HOH 30 230 34 HOH HOH A . G 4 HOH 31 231 133 HOH HOH A . G 4 HOH 32 232 35 HOH HOH A . G 4 HOH 33 233 36 HOH HOH A . G 4 HOH 34 234 38 HOH HOH A . G 4 HOH 35 235 42 HOH HOH A . G 4 HOH 36 236 138 HOH HOH A . G 4 HOH 37 237 43 HOH HOH A . G 4 HOH 38 238 44 HOH HOH A . G 4 HOH 39 239 45 HOH HOH A . G 4 HOH 40 240 49 HOH HOH A . G 4 HOH 41 241 50 HOH HOH A . G 4 HOH 42 242 51 HOH HOH A . G 4 HOH 43 243 54 HOH HOH A . G 4 HOH 44 244 56 HOH HOH A . G 4 HOH 45 245 57 HOH HOH A . G 4 HOH 46 246 62 HOH HOH A . G 4 HOH 47 247 149 HOH HOH A . G 4 HOH 48 248 65 HOH HOH A . G 4 HOH 49 249 66 HOH HOH A . G 4 HOH 50 250 67 HOH HOH A . G 4 HOH 51 251 69 HOH HOH A . G 4 HOH 52 252 71 HOH HOH A . G 4 HOH 53 253 74 HOH HOH A . G 4 HOH 54 254 78 HOH HOH A . G 4 HOH 55 255 158 HOH HOH A . G 4 HOH 56 256 79 HOH HOH A . G 4 HOH 57 257 80 HOH HOH A . G 4 HOH 58 258 81 HOH HOH A . G 4 HOH 59 259 83 HOH HOH A . G 4 HOH 60 260 84 HOH HOH A . G 4 HOH 61 261 85 HOH HOH A . G 4 HOH 62 262 165 HOH HOH A . G 4 HOH 63 263 166 HOH HOH A . G 4 HOH 64 264 167 HOH HOH A . G 4 HOH 65 265 168 HOH HOH A . G 4 HOH 66 266 86 HOH HOH A . G 4 HOH 67 267 87 HOH HOH A . G 4 HOH 68 268 171 HOH HOH A . G 4 HOH 69 269 88 HOH HOH A . G 4 HOH 70 270 89 HOH HOH A . G 4 HOH 71 271 174 HOH HOH A . G 4 HOH 72 272 93 HOH HOH A . G 4 HOH 73 273 96 HOH HOH A . G 4 HOH 74 274 177 HOH HOH A . G 4 HOH 75 275 99 HOH HOH A . G 4 HOH 76 276 102 HOH HOH A . G 4 HOH 77 277 181 HOH HOH A . G 4 HOH 78 278 206 HOH HOH A . G 4 HOH 79 279 214 HOH HOH A . G 4 HOH 80 280 215 HOH HOH A . G 4 HOH 81 281 216 HOH HOH A . G 4 HOH 82 282 218 HOH HOH A . G 4 HOH 83 283 221 HOH HOH A . G 4 HOH 84 284 222 HOH HOH A . G 4 HOH 85 285 223 HOH HOH A . G 4 HOH 86 286 224 HOH HOH A . G 4 HOH 87 287 225 HOH HOH A . G 4 HOH 88 288 230 HOH HOH A . G 4 HOH 89 289 233 HOH HOH A . G 4 HOH 90 290 234 HOH HOH A . G 4 HOH 91 291 236 HOH HOH A . G 4 HOH 92 292 238 HOH HOH A . G 4 HOH 93 293 239 HOH HOH A . G 4 HOH 94 294 241 HOH HOH A . G 4 HOH 95 295 153 HOH HOH A . H 4 HOH 1 201 1 HOH HOH B . H 4 HOH 2 202 7 HOH HOH B . H 4 HOH 3 203 9 HOH HOH B . H 4 HOH 4 204 10 HOH HOH B . H 4 HOH 5 205 11 HOH HOH B . H 4 HOH 6 206 13 HOH HOH B . H 4 HOH 7 207 14 HOH HOH B . H 4 HOH 8 208 15 HOH HOH B . H 4 HOH 9 209 16 HOH HOH B . H 4 HOH 10 210 22 HOH HOH B . H 4 HOH 11 211 24 HOH HOH B . H 4 HOH 12 212 25 HOH HOH B . H 4 HOH 13 213 113 HOH HOH B . H 4 HOH 14 214 114 HOH HOH B . H 4 HOH 15 215 27 HOH HOH B . H 4 HOH 16 216 29 HOH HOH B . H 4 HOH 17 217 30 HOH HOH B . H 4 HOH 18 218 31 HOH HOH B . H 4 HOH 19 219 119 HOH HOH B . H 4 HOH 20 220 120 HOH HOH B . H 4 HOH 21 221 32 HOH HOH B . H 4 HOH 22 222 122 HOH HOH B . H 4 HOH 23 223 33 HOH HOH B . H 4 HOH 24 224 37 HOH HOH B . H 4 HOH 25 225 39 HOH HOH B . H 4 HOH 26 226 40 HOH HOH B . H 4 HOH 27 227 127 HOH HOH B . H 4 HOH 28 228 41 HOH HOH B . H 4 HOH 29 229 129 HOH HOH B . H 4 HOH 30 230 46 HOH HOH B . H 4 HOH 31 231 47 HOH HOH B . H 4 HOH 32 232 48 HOH HOH B . H 4 HOH 33 233 52 HOH HOH B . H 4 HOH 34 234 53 HOH HOH B . H 4 HOH 35 235 135 HOH HOH B . H 4 HOH 36 236 136 HOH HOH B . H 4 HOH 37 237 55 HOH HOH B . H 4 HOH 38 238 58 HOH HOH B . H 4 HOH 39 239 59 HOH HOH B . H 4 HOH 40 240 140 HOH HOH B . H 4 HOH 41 241 141 HOH HOH B . H 4 HOH 42 242 60 HOH HOH B . H 4 HOH 43 243 143 HOH HOH B . H 4 HOH 44 244 144 HOH HOH B . H 4 HOH 45 245 61 HOH HOH B . H 4 HOH 46 246 146 HOH HOH B . H 4 HOH 47 247 63 HOH HOH B . H 4 HOH 48 248 148 HOH HOH B . H 4 HOH 49 249 68 HOH HOH B . H 4 HOH 50 250 70 HOH HOH B . H 4 HOH 51 251 151 HOH HOH B . H 4 HOH 52 252 72 HOH HOH B . H 4 HOH 53 253 75 HOH HOH B . H 4 HOH 54 254 155 HOH HOH B . H 4 HOH 55 255 156 HOH HOH B . H 4 HOH 56 256 76 HOH HOH B . H 4 HOH 57 257 82 HOH HOH B . H 4 HOH 58 258 90 HOH HOH B . H 4 HOH 59 259 160 HOH HOH B . H 4 HOH 60 260 91 HOH HOH B . H 4 HOH 61 261 92 HOH HOH B . H 4 HOH 62 262 163 HOH HOH B . H 4 HOH 63 263 94 HOH HOH B . H 4 HOH 64 264 95 HOH HOH B . H 4 HOH 65 265 98 HOH HOH B . H 4 HOH 66 266 100 HOH HOH B . H 4 HOH 67 267 73 HOH HOH B . H 4 HOH 68 268 173 HOH HOH B . H 4 HOH 69 269 175 HOH HOH B . H 4 HOH 70 270 176 HOH HOH B . H 4 HOH 71 271 178 HOH HOH B . H 4 HOH 72 272 183 HOH HOH B . H 4 HOH 73 273 193 HOH HOH B . H 4 HOH 74 274 203 HOH HOH B . H 4 HOH 75 275 213 HOH HOH B . H 4 HOH 76 276 217 HOH HOH B . H 4 HOH 77 277 219 HOH HOH B . H 4 HOH 78 278 226 HOH HOH B . H 4 HOH 79 279 231 HOH HOH B . H 4 HOH 80 280 232 HOH HOH B . H 4 HOH 81 281 235 HOH HOH B . H 4 HOH 82 282 237 HOH HOH B . H 4 HOH 83 283 240 HOH HOH B . H 4 HOH 84 284 242 HOH HOH B . H 4 HOH 85 285 243 HOH HOH B . H 4 HOH 86 286 244 HOH HOH B . H 4 HOH 87 287 245 HOH HOH B . H 4 HOH 88 288 246 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_001019 _pdbx_molecule_features.name '(S)-N-((2S,3S,4R,5R)-4-AMINO-3,5-DIHYDROXY-1,6-DIPHENYLHEXAN-2-YL)-3-METHYL-2-(2-PHENOXYACETAMIDO)BUTANAMIDE' _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_001019 _pdbx_molecule.asym_id C # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4100 ? 1 MORE -20 ? 1 'SSA (A^2)' 10020 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-08-15 2 'Structure model' 1 1 2012-12-12 3 'Structure model' 1 2 2014-10-29 4 'Structure model' 1 3 2017-11-08 5 'Structure model' 1 4 2019-03-20 6 'Structure model' 1 5 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Database references' 8 6 'Structure model' 'Derived calculations' 9 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' citation 3 5 'Structure model' citation_author 4 6 'Structure model' chem_comp_atom 5 6 'Structure model' chem_comp_bond 6 6 'Structure model' database_2 7 6 'Structure model' pdbx_initial_refinement_model 8 6 'Structure model' struct_ref_seq_dif 9 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_citation.country' 2 5 'Structure model' '_citation.journal_abbrev' 3 5 'Structure model' '_citation.journal_id_CSD' 4 5 'Structure model' '_citation.journal_id_ISSN' 5 5 'Structure model' '_citation.journal_volume' 6 5 'Structure model' '_citation.pdbx_database_id_DOI' 7 5 'Structure model' '_citation.pdbx_database_id_PubMed' 8 5 'Structure model' '_citation.title' 9 5 'Structure model' '_citation.year' 10 6 'Structure model' '_database_2.pdbx_DOI' 11 6 'Structure model' '_database_2.pdbx_database_accession' 12 6 'Structure model' '_struct_ref_seq_dif.details' 13 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 14 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 15 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 REFMAC refinement 5.2.0019 ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # _pdbx_entry_details.entry_id 3TOH _pdbx_entry_details.compound_details 'EPOXYDIC INHIBITOR' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 210 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 248 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.92 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 079 C1 C N N 1 079 O1 O N N 2 079 C2 C N N 3 079 O2 O N N 4 079 C3 C Y N 5 079 C4 C Y N 6 079 C5 C Y N 7 079 C6 C Y N 8 079 C7 C Y N 9 079 C8 C Y N 10 079 N1 N N N 11 079 C9 C N S 12 079 C13 C N N 13 079 O3 O N N 14 079 C10 C N N 15 079 C11 C N N 16 079 C12 C N N 17 079 C27 C Y N 18 079 C28 C Y N 19 079 C29 C Y N 20 079 C30 C Y N 21 079 C31 C Y N 22 079 C26 C Y N 23 079 C25 C N N 24 079 C24 C N R 25 079 O5 O N N 26 079 C23 C N R 27 079 N3 N N N 28 079 C22 C N S 29 079 O4 O N N 30 079 C14 C N S 31 079 C15 C N N 32 079 C16 C Y N 33 079 C17 C Y N 34 079 C18 C Y N 35 079 C19 C Y N 36 079 C20 C Y N 37 079 C21 C Y N 38 079 N2 N N N 39 079 H34 H N N 40 079 H35 H N N 41 079 H36 H N N 42 079 H37 H N N 43 079 H38 H N N 44 079 H39 H N N 45 079 H40 H N N 46 079 H33 H N N 47 079 H25 H N N 48 079 H26 H N N 49 079 H30 H N N 50 079 H31 H N N 51 079 H32 H N N 52 079 H27 H N N 53 079 H28 H N N 54 079 H29 H N N 55 079 H1 H N N 56 079 H2 H N N 57 079 H3 H N N 58 079 H4 H N N 59 079 H5 H N N 60 079 H6 H N N 61 079 H7 H N N 62 079 H8 H N N 63 079 H9 H N N 64 079 H10 H N N 65 079 H11 H N N 66 079 H12 H N N 67 079 H14 H N N 68 079 H15 H N N 69 079 H16 H N N 70 079 H17 H N N 71 079 H18 H N N 72 079 H19 H N N 73 079 H20 H N N 74 079 H21 H N N 75 079 H22 H N N 76 079 H23 H N N 77 079 H24 H N N 78 ALA N N N N 79 ALA CA C N S 80 ALA C C N N 81 ALA O O N N 82 ALA CB C N N 83 ALA OXT O N N 84 ALA H H N N 85 ALA H2 H N N 86 ALA HA H N N 87 ALA HB1 H N N 88 ALA HB2 H N N 89 ALA HB3 H N N 90 ALA HXT H N N 91 ARG N N N N 92 ARG CA C N S 93 ARG C C N N 94 ARG O O N N 95 ARG CB C N N 96 ARG CG C N N 97 ARG CD C N N 98 ARG NE N N N 99 ARG CZ C N N 100 ARG NH1 N N N 101 ARG NH2 N N N 102 ARG OXT O N N 103 ARG H H N N 104 ARG H2 H N N 105 ARG HA H N N 106 ARG HB2 H N N 107 ARG HB3 H N N 108 ARG HG2 H N N 109 ARG HG3 H N N 110 ARG HD2 H N N 111 ARG HD3 H N N 112 ARG HE H N N 113 ARG HH11 H N N 114 ARG HH12 H N N 115 ARG HH21 H N N 116 ARG HH22 H N N 117 ARG HXT H N N 118 ASN N N N N 119 ASN CA C N S 120 ASN C C N N 121 ASN O O N N 122 ASN CB C N N 123 ASN CG C N N 124 ASN OD1 O N N 125 ASN ND2 N N N 126 ASN OXT O N N 127 ASN H H N N 128 ASN H2 H N N 129 ASN HA H N N 130 ASN HB2 H N N 131 ASN HB3 H N N 132 ASN HD21 H N N 133 ASN HD22 H N N 134 ASN HXT H N N 135 ASP N N N N 136 ASP CA C N S 137 ASP C C N N 138 ASP O O N N 139 ASP CB C N N 140 ASP CG C N N 141 ASP OD1 O N N 142 ASP OD2 O N N 143 ASP OXT O N N 144 ASP H H N N 145 ASP H2 H N N 146 ASP HA H N N 147 ASP HB2 H N N 148 ASP HB3 H N N 149 ASP HD2 H N N 150 ASP HXT H N N 151 CYS N N N N 152 CYS CA C N R 153 CYS C C N N 154 CYS O O N N 155 CYS CB C N N 156 CYS SG S N N 157 CYS OXT O N N 158 CYS H H N N 159 CYS H2 H N N 160 CYS HA H N N 161 CYS HB2 H N N 162 CYS HB3 H N N 163 CYS HG H N N 164 CYS HXT H N N 165 DMS S S N N 166 DMS O O N N 167 DMS C1 C N N 168 DMS C2 C N N 169 DMS H11 H N N 170 DMS H12 H N N 171 DMS H13 H N N 172 DMS H21 H N N 173 DMS H22 H N N 174 DMS H23 H N N 175 GLN N N N N 176 GLN CA C N S 177 GLN C C N N 178 GLN O O N N 179 GLN CB C N N 180 GLN CG C N N 181 GLN CD C N N 182 GLN OE1 O N N 183 GLN NE2 N N N 184 GLN OXT O N N 185 GLN H H N N 186 GLN H2 H N N 187 GLN HA H N N 188 GLN HB2 H N N 189 GLN HB3 H N N 190 GLN HG2 H N N 191 GLN HG3 H N N 192 GLN HE21 H N N 193 GLN HE22 H N N 194 GLN HXT H N N 195 GLU N N N N 196 GLU CA C N S 197 GLU C C N N 198 GLU O O N N 199 GLU CB C N N 200 GLU CG C N N 201 GLU CD C N N 202 GLU OE1 O N N 203 GLU OE2 O N N 204 GLU OXT O N N 205 GLU H H N N 206 GLU H2 H N N 207 GLU HA H N N 208 GLU HB2 H N N 209 GLU HB3 H N N 210 GLU HG2 H N N 211 GLU HG3 H N N 212 GLU HE2 H N N 213 GLU HXT H N N 214 GLY N N N N 215 GLY CA C N N 216 GLY C C N N 217 GLY O O N N 218 GLY OXT O N N 219 GLY H H N N 220 GLY H2 H N N 221 GLY HA2 H N N 222 GLY HA3 H N N 223 GLY HXT H N N 224 HIS N N N N 225 HIS CA C N S 226 HIS C C N N 227 HIS O O N N 228 HIS CB C N N 229 HIS CG C Y N 230 HIS ND1 N Y N 231 HIS CD2 C Y N 232 HIS CE1 C Y N 233 HIS NE2 N Y N 234 HIS OXT O N N 235 HIS H H N N 236 HIS H2 H N N 237 HIS HA H N N 238 HIS HB2 H N N 239 HIS HB3 H N N 240 HIS HD1 H N N 241 HIS HD2 H N N 242 HIS HE1 H N N 243 HIS HE2 H N N 244 HIS HXT H N N 245 HOH O O N N 246 HOH H1 H N N 247 HOH H2 H N N 248 ILE N N N N 249 ILE CA C N S 250 ILE C C N N 251 ILE O O N N 252 ILE CB C N S 253 ILE CG1 C N N 254 ILE CG2 C N N 255 ILE CD1 C N N 256 ILE OXT O N N 257 ILE H H N N 258 ILE H2 H N N 259 ILE HA H N N 260 ILE HB H N N 261 ILE HG12 H N N 262 ILE HG13 H N N 263 ILE HG21 H N N 264 ILE HG22 H N N 265 ILE HG23 H N N 266 ILE HD11 H N N 267 ILE HD12 H N N 268 ILE HD13 H N N 269 ILE HXT H N N 270 LEU N N N N 271 LEU CA C N S 272 LEU C C N N 273 LEU O O N N 274 LEU CB C N N 275 LEU CG C N N 276 LEU CD1 C N N 277 LEU CD2 C N N 278 LEU OXT O N N 279 LEU H H N N 280 LEU H2 H N N 281 LEU HA H N N 282 LEU HB2 H N N 283 LEU HB3 H N N 284 LEU HG H N N 285 LEU HD11 H N N 286 LEU HD12 H N N 287 LEU HD13 H N N 288 LEU HD21 H N N 289 LEU HD22 H N N 290 LEU HD23 H N N 291 LEU HXT H N N 292 LYS N N N N 293 LYS CA C N S 294 LYS C C N N 295 LYS O O N N 296 LYS CB C N N 297 LYS CG C N N 298 LYS CD C N N 299 LYS CE C N N 300 LYS NZ N N N 301 LYS OXT O N N 302 LYS H H N N 303 LYS H2 H N N 304 LYS HA H N N 305 LYS HB2 H N N 306 LYS HB3 H N N 307 LYS HG2 H N N 308 LYS HG3 H N N 309 LYS HD2 H N N 310 LYS HD3 H N N 311 LYS HE2 H N N 312 LYS HE3 H N N 313 LYS HZ1 H N N 314 LYS HZ2 H N N 315 LYS HZ3 H N N 316 LYS HXT H N N 317 MET N N N N 318 MET CA C N S 319 MET C C N N 320 MET O O N N 321 MET CB C N N 322 MET CG C N N 323 MET SD S N N 324 MET CE C N N 325 MET OXT O N N 326 MET H H N N 327 MET H2 H N N 328 MET HA H N N 329 MET HB2 H N N 330 MET HB3 H N N 331 MET HG2 H N N 332 MET HG3 H N N 333 MET HE1 H N N 334 MET HE2 H N N 335 MET HE3 H N N 336 MET HXT H N N 337 PHE N N N N 338 PHE CA C N S 339 PHE C C N N 340 PHE O O N N 341 PHE CB C N N 342 PHE CG C Y N 343 PHE CD1 C Y N 344 PHE CD2 C Y N 345 PHE CE1 C Y N 346 PHE CE2 C Y N 347 PHE CZ C Y N 348 PHE OXT O N N 349 PHE H H N N 350 PHE H2 H N N 351 PHE HA H N N 352 PHE HB2 H N N 353 PHE HB3 H N N 354 PHE HD1 H N N 355 PHE HD2 H N N 356 PHE HE1 H N N 357 PHE HE2 H N N 358 PHE HZ H N N 359 PHE HXT H N N 360 PRO N N N N 361 PRO CA C N S 362 PRO C C N N 363 PRO O O N N 364 PRO CB C N N 365 PRO CG C N N 366 PRO CD C N N 367 PRO OXT O N N 368 PRO H H N N 369 PRO HA H N N 370 PRO HB2 H N N 371 PRO HB3 H N N 372 PRO HG2 H N N 373 PRO HG3 H N N 374 PRO HD2 H N N 375 PRO HD3 H N N 376 PRO HXT H N N 377 SER N N N N 378 SER CA C N S 379 SER C C N N 380 SER O O N N 381 SER CB C N N 382 SER OG O N N 383 SER OXT O N N 384 SER H H N N 385 SER H2 H N N 386 SER HA H N N 387 SER HB2 H N N 388 SER HB3 H N N 389 SER HG H N N 390 SER HXT H N N 391 THR N N N N 392 THR CA C N S 393 THR C C N N 394 THR O O N N 395 THR CB C N R 396 THR OG1 O N N 397 THR CG2 C N N 398 THR OXT O N N 399 THR H H N N 400 THR H2 H N N 401 THR HA H N N 402 THR HB H N N 403 THR HG1 H N N 404 THR HG21 H N N 405 THR HG22 H N N 406 THR HG23 H N N 407 THR HXT H N N 408 TRP N N N N 409 TRP CA C N S 410 TRP C C N N 411 TRP O O N N 412 TRP CB C N N 413 TRP CG C Y N 414 TRP CD1 C Y N 415 TRP CD2 C Y N 416 TRP NE1 N Y N 417 TRP CE2 C Y N 418 TRP CE3 C Y N 419 TRP CZ2 C Y N 420 TRP CZ3 C Y N 421 TRP CH2 C Y N 422 TRP OXT O N N 423 TRP H H N N 424 TRP H2 H N N 425 TRP HA H N N 426 TRP HB2 H N N 427 TRP HB3 H N N 428 TRP HD1 H N N 429 TRP HE1 H N N 430 TRP HE3 H N N 431 TRP HZ2 H N N 432 TRP HZ3 H N N 433 TRP HH2 H N N 434 TRP HXT H N N 435 TYR N N N N 436 TYR CA C N S 437 TYR C C N N 438 TYR O O N N 439 TYR CB C N N 440 TYR CG C Y N 441 TYR CD1 C Y N 442 TYR CD2 C Y N 443 TYR CE1 C Y N 444 TYR CE2 C Y N 445 TYR CZ C Y N 446 TYR OH O N N 447 TYR OXT O N N 448 TYR H H N N 449 TYR H2 H N N 450 TYR HA H N N 451 TYR HB2 H N N 452 TYR HB3 H N N 453 TYR HD1 H N N 454 TYR HD2 H N N 455 TYR HE1 H N N 456 TYR HE2 H N N 457 TYR HH H N N 458 TYR HXT H N N 459 VAL N N N N 460 VAL CA C N S 461 VAL C C N N 462 VAL O O N N 463 VAL CB C N N 464 VAL CG1 C N N 465 VAL CG2 C N N 466 VAL OXT O N N 467 VAL H H N N 468 VAL H2 H N N 469 VAL HA H N N 470 VAL HB H N N 471 VAL HG11 H N N 472 VAL HG12 H N N 473 VAL HG13 H N N 474 VAL HG21 H N N 475 VAL HG22 H N N 476 VAL HG23 H N N 477 VAL HXT H N N 478 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 079 C29 C28 doub Y N 1 079 C29 C30 sing Y N 2 079 C28 C27 sing Y N 3 079 C30 C31 doub Y N 4 079 C27 C26 doub Y N 5 079 C31 C26 sing Y N 6 079 C26 C25 sing N N 7 079 O5 C24 sing N N 8 079 C25 C24 sing N N 9 079 C24 C23 sing N N 10 079 C23 N3 sing N N 11 079 C23 C22 sing N N 12 079 C22 C14 sing N N 13 079 C22 O4 sing N N 14 079 O3 C13 doub N N 15 079 C14 C15 sing N N 16 079 C14 N2 sing N N 17 079 C17 C18 doub Y N 18 079 C17 C16 sing Y N 19 079 C12 C10 sing N N 20 079 C13 N2 sing N N 21 079 C13 C9 sing N N 22 079 C15 C16 sing N N 23 079 C18 C19 sing Y N 24 079 C16 C21 doub Y N 25 079 C10 C9 sing N N 26 079 C10 C11 sing N N 27 079 C9 N1 sing N N 28 079 C19 C20 doub Y N 29 079 N1 C1 sing N N 30 079 C21 C20 sing Y N 31 079 C8 C7 doub Y N 32 079 C8 C3 sing Y N 33 079 C7 C6 sing Y N 34 079 O2 C3 sing N N 35 079 O2 C2 sing N N 36 079 C3 C4 doub Y N 37 079 C1 O1 doub N N 38 079 C1 C2 sing N N 39 079 C6 C5 doub Y N 40 079 C4 C5 sing Y N 41 079 C27 H1 sing N N 42 079 C28 H2 sing N N 43 079 C29 H3 sing N N 44 079 C30 H4 sing N N 45 079 C31 H5 sing N N 46 079 C25 H6 sing N N 47 079 C25 H7 sing N N 48 079 C24 H8 sing N N 49 079 O5 H9 sing N N 50 079 C23 H10 sing N N 51 079 N3 H11 sing N N 52 079 N3 H12 sing N N 53 079 C22 H14 sing N N 54 079 O4 H15 sing N N 55 079 C14 H16 sing N N 56 079 C15 H17 sing N N 57 079 C15 H18 sing N N 58 079 C17 H19 sing N N 59 079 C18 H20 sing N N 60 079 C19 H21 sing N N 61 079 C20 H22 sing N N 62 079 C21 H23 sing N N 63 079 N2 H24 sing N N 64 079 C9 H25 sing N N 65 079 C10 H26 sing N N 66 079 C12 H27 sing N N 67 079 C12 H28 sing N N 68 079 C12 H29 sing N N 69 079 C11 H30 sing N N 70 079 C11 H31 sing N N 71 079 C11 H32 sing N N 72 079 N1 H33 sing N N 73 079 C2 H34 sing N N 74 079 C2 H35 sing N N 75 079 C4 H36 sing N N 76 079 C5 H37 sing N N 77 079 C6 H38 sing N N 78 079 C7 H39 sing N N 79 079 C8 H40 sing N N 80 ALA N CA sing N N 81 ALA N H sing N N 82 ALA N H2 sing N N 83 ALA CA C sing N N 84 ALA CA CB sing N N 85 ALA CA HA sing N N 86 ALA C O doub N N 87 ALA C OXT sing N N 88 ALA CB HB1 sing N N 89 ALA CB HB2 sing N N 90 ALA CB HB3 sing N N 91 ALA OXT HXT sing N N 92 ARG N CA sing N N 93 ARG N H sing N N 94 ARG N H2 sing N N 95 ARG CA C sing N N 96 ARG CA CB sing N N 97 ARG CA HA sing N N 98 ARG C O doub N N 99 ARG C OXT sing N N 100 ARG CB CG sing N N 101 ARG CB HB2 sing N N 102 ARG CB HB3 sing N N 103 ARG CG CD sing N N 104 ARG CG HG2 sing N N 105 ARG CG HG3 sing N N 106 ARG CD NE sing N N 107 ARG CD HD2 sing N N 108 ARG CD HD3 sing N N 109 ARG NE CZ sing N N 110 ARG NE HE sing N N 111 ARG CZ NH1 sing N N 112 ARG CZ NH2 doub N N 113 ARG NH1 HH11 sing N N 114 ARG NH1 HH12 sing N N 115 ARG NH2 HH21 sing N N 116 ARG NH2 HH22 sing N N 117 ARG OXT HXT sing N N 118 ASN N CA sing N N 119 ASN N H sing N N 120 ASN N H2 sing N N 121 ASN CA C sing N N 122 ASN CA CB sing N N 123 ASN CA HA sing N N 124 ASN C O doub N N 125 ASN C OXT sing N N 126 ASN CB CG sing N N 127 ASN CB HB2 sing N N 128 ASN CB HB3 sing N N 129 ASN CG OD1 doub N N 130 ASN CG ND2 sing N N 131 ASN ND2 HD21 sing N N 132 ASN ND2 HD22 sing N N 133 ASN OXT HXT sing N N 134 ASP N CA sing N N 135 ASP N H sing N N 136 ASP N H2 sing N N 137 ASP CA C sing N N 138 ASP CA CB sing N N 139 ASP CA HA sing N N 140 ASP C O doub N N 141 ASP C OXT sing N N 142 ASP CB CG sing N N 143 ASP CB HB2 sing N N 144 ASP CB HB3 sing N N 145 ASP CG OD1 doub N N 146 ASP CG OD2 sing N N 147 ASP OD2 HD2 sing N N 148 ASP OXT HXT sing N N 149 CYS N CA sing N N 150 CYS N H sing N N 151 CYS N H2 sing N N 152 CYS CA C sing N N 153 CYS CA CB sing N N 154 CYS CA HA sing N N 155 CYS C O doub N N 156 CYS C OXT sing N N 157 CYS CB SG sing N N 158 CYS CB HB2 sing N N 159 CYS CB HB3 sing N N 160 CYS SG HG sing N N 161 CYS OXT HXT sing N N 162 DMS S O doub N N 163 DMS S C1 sing N N 164 DMS S C2 sing N N 165 DMS C1 H11 sing N N 166 DMS C1 H12 sing N N 167 DMS C1 H13 sing N N 168 DMS C2 H21 sing N N 169 DMS C2 H22 sing N N 170 DMS C2 H23 sing N N 171 GLN N CA sing N N 172 GLN N H sing N N 173 GLN N H2 sing N N 174 GLN CA C sing N N 175 GLN CA CB sing N N 176 GLN CA HA sing N N 177 GLN C O doub N N 178 GLN C OXT sing N N 179 GLN CB CG sing N N 180 GLN CB HB2 sing N N 181 GLN CB HB3 sing N N 182 GLN CG CD sing N N 183 GLN CG HG2 sing N N 184 GLN CG HG3 sing N N 185 GLN CD OE1 doub N N 186 GLN CD NE2 sing N N 187 GLN NE2 HE21 sing N N 188 GLN NE2 HE22 sing N N 189 GLN OXT HXT sing N N 190 GLU N CA sing N N 191 GLU N H sing N N 192 GLU N H2 sing N N 193 GLU CA C sing N N 194 GLU CA CB sing N N 195 GLU CA HA sing N N 196 GLU C O doub N N 197 GLU C OXT sing N N 198 GLU CB CG sing N N 199 GLU CB HB2 sing N N 200 GLU CB HB3 sing N N 201 GLU CG CD sing N N 202 GLU CG HG2 sing N N 203 GLU CG HG3 sing N N 204 GLU CD OE1 doub N N 205 GLU CD OE2 sing N N 206 GLU OE2 HE2 sing N N 207 GLU OXT HXT sing N N 208 GLY N CA sing N N 209 GLY N H sing N N 210 GLY N H2 sing N N 211 GLY CA C sing N N 212 GLY CA HA2 sing N N 213 GLY CA HA3 sing N N 214 GLY C O doub N N 215 GLY C OXT sing N N 216 GLY OXT HXT sing N N 217 HIS N CA sing N N 218 HIS N H sing N N 219 HIS N H2 sing N N 220 HIS CA C sing N N 221 HIS CA CB sing N N 222 HIS CA HA sing N N 223 HIS C O doub N N 224 HIS C OXT sing N N 225 HIS CB CG sing N N 226 HIS CB HB2 sing N N 227 HIS CB HB3 sing N N 228 HIS CG ND1 sing Y N 229 HIS CG CD2 doub Y N 230 HIS ND1 CE1 doub Y N 231 HIS ND1 HD1 sing N N 232 HIS CD2 NE2 sing Y N 233 HIS CD2 HD2 sing N N 234 HIS CE1 NE2 sing Y N 235 HIS CE1 HE1 sing N N 236 HIS NE2 HE2 sing N N 237 HIS OXT HXT sing N N 238 HOH O H1 sing N N 239 HOH O H2 sing N N 240 ILE N CA sing N N 241 ILE N H sing N N 242 ILE N H2 sing N N 243 ILE CA C sing N N 244 ILE CA CB sing N N 245 ILE CA HA sing N N 246 ILE C O doub N N 247 ILE C OXT sing N N 248 ILE CB CG1 sing N N 249 ILE CB CG2 sing N N 250 ILE CB HB sing N N 251 ILE CG1 CD1 sing N N 252 ILE CG1 HG12 sing N N 253 ILE CG1 HG13 sing N N 254 ILE CG2 HG21 sing N N 255 ILE CG2 HG22 sing N N 256 ILE CG2 HG23 sing N N 257 ILE CD1 HD11 sing N N 258 ILE CD1 HD12 sing N N 259 ILE CD1 HD13 sing N N 260 ILE OXT HXT sing N N 261 LEU N CA sing N N 262 LEU N H sing N N 263 LEU N H2 sing N N 264 LEU CA C sing N N 265 LEU CA CB sing N N 266 LEU CA HA sing N N 267 LEU C O doub N N 268 LEU C OXT sing N N 269 LEU CB CG sing N N 270 LEU CB HB2 sing N N 271 LEU CB HB3 sing N N 272 LEU CG CD1 sing N N 273 LEU CG CD2 sing N N 274 LEU CG HG sing N N 275 LEU CD1 HD11 sing N N 276 LEU CD1 HD12 sing N N 277 LEU CD1 HD13 sing N N 278 LEU CD2 HD21 sing N N 279 LEU CD2 HD22 sing N N 280 LEU CD2 HD23 sing N N 281 LEU OXT HXT sing N N 282 LYS N CA sing N N 283 LYS N H sing N N 284 LYS N H2 sing N N 285 LYS CA C sing N N 286 LYS CA CB sing N N 287 LYS CA HA sing N N 288 LYS C O doub N N 289 LYS C OXT sing N N 290 LYS CB CG sing N N 291 LYS CB HB2 sing N N 292 LYS CB HB3 sing N N 293 LYS CG CD sing N N 294 LYS CG HG2 sing N N 295 LYS CG HG3 sing N N 296 LYS CD CE sing N N 297 LYS CD HD2 sing N N 298 LYS CD HD3 sing N N 299 LYS CE NZ sing N N 300 LYS CE HE2 sing N N 301 LYS CE HE3 sing N N 302 LYS NZ HZ1 sing N N 303 LYS NZ HZ2 sing N N 304 LYS NZ HZ3 sing N N 305 LYS OXT HXT sing N N 306 MET N CA sing N N 307 MET N H sing N N 308 MET N H2 sing N N 309 MET CA C sing N N 310 MET CA CB sing N N 311 MET CA HA sing N N 312 MET C O doub N N 313 MET C OXT sing N N 314 MET CB CG sing N N 315 MET CB HB2 sing N N 316 MET CB HB3 sing N N 317 MET CG SD sing N N 318 MET CG HG2 sing N N 319 MET CG HG3 sing N N 320 MET SD CE sing N N 321 MET CE HE1 sing N N 322 MET CE HE2 sing N N 323 MET CE HE3 sing N N 324 MET OXT HXT sing N N 325 PHE N CA sing N N 326 PHE N H sing N N 327 PHE N H2 sing N N 328 PHE CA C sing N N 329 PHE CA CB sing N N 330 PHE CA HA sing N N 331 PHE C O doub N N 332 PHE C OXT sing N N 333 PHE CB CG sing N N 334 PHE CB HB2 sing N N 335 PHE CB HB3 sing N N 336 PHE CG CD1 doub Y N 337 PHE CG CD2 sing Y N 338 PHE CD1 CE1 sing Y N 339 PHE CD1 HD1 sing N N 340 PHE CD2 CE2 doub Y N 341 PHE CD2 HD2 sing N N 342 PHE CE1 CZ doub Y N 343 PHE CE1 HE1 sing N N 344 PHE CE2 CZ sing Y N 345 PHE CE2 HE2 sing N N 346 PHE CZ HZ sing N N 347 PHE OXT HXT sing N N 348 PRO N CA sing N N 349 PRO N CD sing N N 350 PRO N H sing N N 351 PRO CA C sing N N 352 PRO CA CB sing N N 353 PRO CA HA sing N N 354 PRO C O doub N N 355 PRO C OXT sing N N 356 PRO CB CG sing N N 357 PRO CB HB2 sing N N 358 PRO CB HB3 sing N N 359 PRO CG CD sing N N 360 PRO CG HG2 sing N N 361 PRO CG HG3 sing N N 362 PRO CD HD2 sing N N 363 PRO CD HD3 sing N N 364 PRO OXT HXT sing N N 365 SER N CA sing N N 366 SER N H sing N N 367 SER N H2 sing N N 368 SER CA C sing N N 369 SER CA CB sing N N 370 SER CA HA sing N N 371 SER C O doub N N 372 SER C OXT sing N N 373 SER CB OG sing N N 374 SER CB HB2 sing N N 375 SER CB HB3 sing N N 376 SER OG HG sing N N 377 SER OXT HXT sing N N 378 THR N CA sing N N 379 THR N H sing N N 380 THR N H2 sing N N 381 THR CA C sing N N 382 THR CA CB sing N N 383 THR CA HA sing N N 384 THR C O doub N N 385 THR C OXT sing N N 386 THR CB OG1 sing N N 387 THR CB CG2 sing N N 388 THR CB HB sing N N 389 THR OG1 HG1 sing N N 390 THR CG2 HG21 sing N N 391 THR CG2 HG22 sing N N 392 THR CG2 HG23 sing N N 393 THR OXT HXT sing N N 394 TRP N CA sing N N 395 TRP N H sing N N 396 TRP N H2 sing N N 397 TRP CA C sing N N 398 TRP CA CB sing N N 399 TRP CA HA sing N N 400 TRP C O doub N N 401 TRP C OXT sing N N 402 TRP CB CG sing N N 403 TRP CB HB2 sing N N 404 TRP CB HB3 sing N N 405 TRP CG CD1 doub Y N 406 TRP CG CD2 sing Y N 407 TRP CD1 NE1 sing Y N 408 TRP CD1 HD1 sing N N 409 TRP CD2 CE2 doub Y N 410 TRP CD2 CE3 sing Y N 411 TRP NE1 CE2 sing Y N 412 TRP NE1 HE1 sing N N 413 TRP CE2 CZ2 sing Y N 414 TRP CE3 CZ3 doub Y N 415 TRP CE3 HE3 sing N N 416 TRP CZ2 CH2 doub Y N 417 TRP CZ2 HZ2 sing N N 418 TRP CZ3 CH2 sing Y N 419 TRP CZ3 HZ3 sing N N 420 TRP CH2 HH2 sing N N 421 TRP OXT HXT sing N N 422 TYR N CA sing N N 423 TYR N H sing N N 424 TYR N H2 sing N N 425 TYR CA C sing N N 426 TYR CA CB sing N N 427 TYR CA HA sing N N 428 TYR C O doub N N 429 TYR C OXT sing N N 430 TYR CB CG sing N N 431 TYR CB HB2 sing N N 432 TYR CB HB3 sing N N 433 TYR CG CD1 doub Y N 434 TYR CG CD2 sing Y N 435 TYR CD1 CE1 sing Y N 436 TYR CD1 HD1 sing N N 437 TYR CD2 CE2 doub Y N 438 TYR CD2 HD2 sing N N 439 TYR CE1 CZ doub Y N 440 TYR CE1 HE1 sing N N 441 TYR CE2 CZ sing Y N 442 TYR CE2 HE2 sing N N 443 TYR CZ OH sing N N 444 TYR OH HH sing N N 445 TYR OXT HXT sing N N 446 VAL N CA sing N N 447 VAL N H sing N N 448 VAL N H2 sing N N 449 VAL CA C sing N N 450 VAL CA CB sing N N 451 VAL CA HA sing N N 452 VAL C O doub N N 453 VAL C OXT sing N N 454 VAL CB CG1 sing N N 455 VAL CB CG2 sing N N 456 VAL CB HB sing N N 457 VAL CG1 HG11 sing N N 458 VAL CG1 HG12 sing N N 459 VAL CG1 HG13 sing N N 460 VAL CG2 HG21 sing N N 461 VAL CG2 HG22 sing N N 462 VAL CG2 HG23 sing N N 463 VAL OXT HXT sing N N 464 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(S)-N-((2S,3S,4R,5R)-4-amino-3,5-dihydroxy-1,6-diphenylhexan-2-yl)-3-methyl-2-(2-phenoxyacetamido)butanamide' 079 3 'DIMETHYL SULFOXIDE' DMS 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2NMZ _pdbx_initial_refinement_model.details 'PDB ENTRY 2NMZ' #