HEADER HYDROLASE 07-SEP-11 3TP5 TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT DELTA+NVIAGLA TITLE 2 V23E/L36E AT CRYOGENIC TEMPERATURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NUCLEASE A (UNP RESIDUES 83-231); COMPND 5 SYNONYM: TNASE, MICROCOCCAL NUCLEASE, STAPHYLOCOCCAL NUCLEASE; COMPND 6 EC: 3.1.31.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24A+ KEYWDS STAPHYLOCOCCAL NUCLEASE, HYPERSTABLE, PDTP, IONIZABLE GROUP, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.C.ROBINSON,J.L.SCHLESSMAN,B.GARCIA-MORENO E. REVDAT 3 13-SEP-23 3TP5 1 REMARK SEQADV REVDAT 2 06-MAR-13 3TP5 1 JRNL TITLE REVDAT 1 21-SEP-11 3TP5 0 JRNL AUTH A.C.ROBINSON,J.L.SCHLESSMAN,B.GARCIA-MORENO E. JRNL TITL CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT JRNL TITL 2 DELTA+NVIAGLA V23E/L36E AT CRYOGENIC TEMPERATURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 723 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1002 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1036 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.304 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1094 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1473 ; 1.821 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 130 ; 6.057 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;36.323 ;25.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 211 ;13.819 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;11.677 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 155 ; 0.148 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 797 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 642 ; 1.391 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1025 ; 2.249 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 452 ; 3.716 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 447 ; 5.534 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 16 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9250 -22.0140 -18.0250 REMARK 3 T TENSOR REMARK 3 T11: 0.0668 T22: 0.0714 REMARK 3 T33: 0.0316 T12: -0.0046 REMARK 3 T13: -0.0442 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.8001 L22: 1.4566 REMARK 3 L33: 1.6011 L12: 0.8716 REMARK 3 L13: -0.0408 L23: 0.3186 REMARK 3 S TENSOR REMARK 3 S11: 0.0375 S12: 0.0390 S13: -0.2523 REMARK 3 S21: -0.0651 S22: 0.1585 S23: 0.1464 REMARK 3 S31: 0.1255 S32: 0.0770 S33: -0.1960 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 26 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7830 -19.6550 -8.6820 REMARK 3 T TENSOR REMARK 3 T11: 0.0412 T22: 0.1106 REMARK 3 T33: 0.0447 T12: 0.0083 REMARK 3 T13: -0.0215 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: -1.0811 L22: 0.7322 REMARK 3 L33: 10.0686 L12: -1.0344 REMARK 3 L13: 1.1042 L23: -0.4951 REMARK 3 S TENSOR REMARK 3 S11: 0.0411 S12: -0.0606 S13: 0.0166 REMARK 3 S21: -0.0517 S22: -0.0514 S23: -0.1490 REMARK 3 S31: -0.3369 S32: 0.2230 S33: 0.0104 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3960 -14.4030 -18.6150 REMARK 3 T TENSOR REMARK 3 T11: 0.0698 T22: 0.0912 REMARK 3 T33: 0.0503 T12: 0.0073 REMARK 3 T13: -0.0135 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.1700 L22: 3.1515 REMARK 3 L33: -0.7230 L12: -0.3056 REMARK 3 L13: 0.4746 L23: 0.0068 REMARK 3 S TENSOR REMARK 3 S11: -0.0918 S12: 0.0751 S13: 0.0596 REMARK 3 S21: -0.0479 S22: 0.2331 S23: -0.0195 REMARK 3 S31: 0.0027 S32: 0.1248 S33: -0.1414 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0040 -2.1070 -4.7630 REMARK 3 T TENSOR REMARK 3 T11: 0.0669 T22: 0.0706 REMARK 3 T33: 0.0578 T12: -0.0013 REMARK 3 T13: -0.0145 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 6.3699 L22: -1.0903 REMARK 3 L33: 8.5793 L12: 0.4337 REMARK 3 L13: -0.6282 L23: -2.3918 REMARK 3 S TENSOR REMARK 3 S11: 0.1163 S12: 0.0194 S13: 0.4826 REMARK 3 S21: -0.1495 S22: -0.2025 S23: -0.0991 REMARK 3 S31: -0.2026 S32: 0.5972 S33: 0.0861 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1780 -12.6860 -3.4620 REMARK 3 T TENSOR REMARK 3 T11: 0.0782 T22: 0.0673 REMARK 3 T33: 0.0461 T12: 0.0110 REMARK 3 T13: -0.0004 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.7627 L22: 6.8142 REMARK 3 L33: 1.8377 L12: 2.7620 REMARK 3 L13: 1.3326 L23: 2.7448 REMARK 3 S TENSOR REMARK 3 S11: 0.0529 S12: -0.1630 S13: -0.0258 REMARK 3 S21: 0.2085 S22: 0.0204 S23: 0.0090 REMARK 3 S31: 0.0888 S32: -0.0865 S33: -0.0733 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 81 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8640 -17.0370 -22.1700 REMARK 3 T TENSOR REMARK 3 T11: 0.0659 T22: 0.1054 REMARK 3 T33: 0.0165 T12: -0.0186 REMARK 3 T13: -0.0548 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.3722 L22: 2.6299 REMARK 3 L33: 2.0554 L12: 1.0786 REMARK 3 L13: -0.4667 L23: -0.4621 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: 0.2294 S13: -0.1539 REMARK 3 S21: -0.1679 S22: -0.0117 S23: 0.1657 REMARK 3 S31: 0.1359 S32: 0.1447 S33: 0.0258 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 82 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7030 -12.4060 -19.4690 REMARK 3 T TENSOR REMARK 3 T11: 0.0634 T22: 0.0885 REMARK 3 T33: 0.0318 T12: -0.0303 REMARK 3 T13: -0.0235 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 1.7528 L22: 2.5697 REMARK 3 L33: -0.2213 L12: 1.5639 REMARK 3 L13: -0.3704 L23: -0.3448 REMARK 3 S TENSOR REMARK 3 S11: -0.0921 S12: 0.1239 S13: 0.0074 REMARK 3 S21: -0.0962 S22: 0.1450 S23: -0.0313 REMARK 3 S31: 0.0942 S32: -0.0498 S33: -0.0529 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7390 -8.1460 -10.1350 REMARK 3 T TENSOR REMARK 3 T11: 0.0245 T22: 0.0849 REMARK 3 T33: 0.1075 T12: 0.0160 REMARK 3 T13: 0.0114 T23: 0.0567 REMARK 3 L TENSOR REMARK 3 L11: -0.9690 L22: 3.8939 REMARK 3 L33: 0.8307 L12: 0.0650 REMARK 3 L13: -0.5427 L23: 0.4687 REMARK 3 S TENSOR REMARK 3 S11: -0.1607 S12: 0.0043 S13: 0.0214 REMARK 3 S21: 0.1438 S22: 0.2816 S23: 0.3559 REMARK 3 S31: 0.0674 S32: 0.0000 S33: -0.1208 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3040 -2.6890 -22.7710 REMARK 3 T TENSOR REMARK 3 T11: 0.0707 T22: 0.0835 REMARK 3 T33: 0.0472 T12: -0.0471 REMARK 3 T13: -0.0585 T23: 0.0871 REMARK 3 L TENSOR REMARK 3 L11: 1.8379 L22: 3.0305 REMARK 3 L33: 0.0801 L12: -0.6151 REMARK 3 L13: 0.0294 L23: 0.0931 REMARK 3 S TENSOR REMARK 3 S11: 0.0987 S12: 0.1330 S13: 0.2259 REMARK 3 S21: -0.3776 S22: 0.1424 S23: 0.1891 REMARK 3 S31: -0.0845 S32: -0.0236 S33: -0.2411 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 124 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): -0.6570 0.7290 -9.0120 REMARK 3 T TENSOR REMARK 3 T11: -0.0019 T22: 0.0655 REMARK 3 T33: 0.1372 T12: 0.0772 REMARK 3 T13: 0.0458 T23: 0.0855 REMARK 3 L TENSOR REMARK 3 L11: 1.5616 L22: 2.6331 REMARK 3 L33: 4.5329 L12: -0.0676 REMARK 3 L13: 0.7424 L23: 0.2534 REMARK 3 S TENSOR REMARK 3 S11: -0.2416 S12: -0.1330 S13: 0.0637 REMARK 3 S21: 0.1338 S22: 0.4726 S23: 0.4962 REMARK 3 S31: -0.3450 S32: -0.3127 S33: -0.2311 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3TP5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067748. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GE111 REMARK 200 OPTICS : MULTI-LAYER OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER APEX II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XPREP 2008/2 FOR WINDOWS, APEX REMARK 200 DATA SCALING SOFTWARE : XPREP REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14426 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 39.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 1.000 REMARK 200 R MERGE (I) : 0.02000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.00 REMARK 200 R MERGE FOR SHELL (I) : 0.21400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.2.1 REMARK 200 STARTING MODEL: PDB ENTRY 3BDC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 31% MPD, 25 MM POTASSIUM PHOSPHATE, REMARK 280 CALCIUM CHLORIDE, PDTP, PH 7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 15.47050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.48950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.33300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.48950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 15.47050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.33300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 465 ASN A 144 REMARK 465 ALA A 145 REMARK 465 ASP A 146 REMARK 465 SER A 147 REMARK 465 GLY A 148 REMARK 465 GLN A 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 118 65.93 -102.48 REMARK 500 ASN A 138 -111.25 53.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THP A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 151 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SK6 RELATED DB: PDB REMARK 900 RELATED ID: 3TME RELATED DB: PDB DBREF 3TP5 A 1 149 UNP P00644 NUC_STAAU 83 231 SEQADV 3TP5 ASN A 21 UNP P00644 ASP 103 ENGINEERED MUTATION SEQADV 3TP5 GLU A 23 UNP P00644 VAL 105 ENGINEERED MUTATION SEQADV 3TP5 VAL A 33 UNP P00644 THR 115 ENGINEERED MUTATION SEQADV 3TP5 GLU A 36 UNP P00644 LEU 118 ENGINEERED MUTATION SEQADV 3TP5 ILE A 41 UNP P00644 THR 123 ENGINEERED MUTATION SEQADV 3TP5 A UNP P00644 THR 126 DELETION SEQADV 3TP5 A UNP P00644 LYS 127 DELETION SEQADV 3TP5 A UNP P00644 HIS 128 DELETION SEQADV 3TP5 A UNP P00644 PRO 129 DELETION SEQADV 3TP5 A UNP P00644 LYS 130 DELETION SEQADV 3TP5 A UNP P00644 LYS 131 DELETION SEQADV 3TP5 PHE A 50 UNP P00644 GLY 132 ENGINEERED MUTATION SEQADV 3TP5 ASN A 51 UNP P00644 VAL 133 ENGINEERED MUTATION SEQADV 3TP5 ALA A 59 UNP P00644 SER 141 ENGINEERED MUTATION SEQADV 3TP5 GLY A 117 UNP P00644 PRO 199 ENGINEERED MUTATION SEQADV 3TP5 LEU A 124 UNP P00644 HIS 206 ENGINEERED MUTATION SEQADV 3TP5 ALA A 128 UNP P00644 SER 210 ENGINEERED MUTATION SEQRES 1 A 143 ALA THR SER THR LYS LYS LEU HIS LYS GLU PRO ALA THR SEQRES 2 A 143 LEU ILE LYS ALA ILE ASP GLY ASN THR GLU LYS LEU MET SEQRES 3 A 143 TYR LYS GLY GLN PRO MET VAL PHE ARG GLU LEU LEU VAL SEQRES 4 A 143 ASP ILE PRO GLU PHE ASN GLU LYS TYR GLY PRO GLU ALA SEQRES 5 A 143 ALA ALA PHE THR LYS LYS MET VAL GLU ASN ALA LYS LYS SEQRES 6 A 143 ILE GLU VAL GLU PHE ASP LYS GLY GLN ARG THR ASP LYS SEQRES 7 A 143 TYR GLY ARG GLY LEU ALA TYR ILE TYR ALA ASP GLY LYS SEQRES 8 A 143 MET VAL ASN GLU ALA LEU VAL ARG GLN GLY LEU ALA LYS SEQRES 9 A 143 VAL ALA TYR VAL TYR LYS GLY ASN ASN THR HIS GLU GLN SEQRES 10 A 143 LEU LEU ARG LYS ALA GLU ALA GLN ALA LYS LYS GLU LYS SEQRES 11 A 143 LEU ASN ILE TRP SER GLU ASP ASN ALA ASP SER GLY GLN HET THP A 150 25 HET MPD A 151 8 HETNAM THP THYMIDINE-3',5'-DIPHOSPHATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 THP C10 H16 N2 O11 P2 FORMUL 3 MPD C6 H14 O2 FORMUL 4 HOH *97(H2 O) HELIX 1 1 TYR A 54 ASN A 68 1 15 HELIX 2 2 VAL A 99 GLN A 106 1 8 HELIX 3 3 HIS A 121 GLU A 135 1 15 HELIX 4 4 LEU A 137 SER A 141 5 5 SHEET 1 A 6 GLN A 30 MET A 32 0 SHEET 2 A 6 THR A 22 TYR A 27 -1 N TYR A 27 O GLN A 30 SHEET 3 A 6 GLU A 10 LYS A 16 -1 N THR A 13 O MET A 26 SHEET 4 A 6 ILE A 72 GLU A 75 -1 O VAL A 74 N GLU A 10 SHEET 5 A 6 GLY A 88 ALA A 94 -1 O TYR A 93 N GLU A 73 SHEET 6 A 6 PHE A 34 GLU A 36 1 N ARG A 35 O GLY A 88 SHEET 1 B 6 GLN A 30 MET A 32 0 SHEET 2 B 6 THR A 22 TYR A 27 -1 N TYR A 27 O GLN A 30 SHEET 3 B 6 GLU A 10 LYS A 16 -1 N THR A 13 O MET A 26 SHEET 4 B 6 ILE A 72 GLU A 75 -1 O VAL A 74 N GLU A 10 SHEET 5 B 6 GLY A 88 ALA A 94 -1 O TYR A 93 N GLU A 73 SHEET 6 B 6 LYS A 97 MET A 98 -1 O LYS A 97 N ALA A 94 SHEET 1 C 2 VAL A 39 ASP A 40 0 SHEET 2 C 2 LYS A 110 VAL A 111 -1 O LYS A 110 N ASP A 40 SITE 1 AC1 15 PRO A 11 ARG A 35 LYS A 84 TYR A 85 SITE 2 AC1 15 ARG A 87 LEU A 89 TYR A 113 TYR A 115 SITE 3 AC1 15 LYS A 127 HOH A 157 HOH A 160 HOH A 162 SITE 4 AC1 15 HOH A 193 HOH A 200 HOH A 211 SITE 1 AC2 4 THR A 22 PHE A 34 GLU A 36 HOH A 156 CRYST1 30.941 60.666 78.979 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032320 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016484 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012662 0.00000