data_3TPY # _entry.id 3TPY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3TPY pdb_00003tpy 10.2210/pdb3tpy/pdb RCSB RCSB067776 ? ? WWPDB D_1000067776 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2D4N . unspecified PDB 2D4L . unspecified PDB 2D4M . unspecified PDB 3TP1 . unspecified PDB 3TPN . unspecified PDB 3TPS . unspecified PDB 3TPW . unspecified PDB 3TQ3 . unspecified PDB 3TQ4 . unspecified PDB 3TQ5 . unspecified PDB 3TRL . unspecified PDB 3TRN . unspecified PDB 3TS6 . unspecified PDB 3TSL . unspecified PDB 3TTA . unspecified # _pdbx_database_status.entry_id 3TPY _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-09-08 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Barabas, O.' 1 'Nemeth, V.' 2 'Vertessy, B.G.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structural Snapshots of Enzyme-Catalysed Phosphate Ester Hydrolysis Directly Visualize In-line Attack and Inversion' 'to be published' ? ? ? ? ? ? ? 0353 ? ? ? 1 'Crystallization and preliminary X-ray studies of dUTPase from Mason-Pfizer monkey retrovirus.' 'Acta Crystallogr.,Sect.F' 62 399 401 2006 ? DK 1744-3091 ? ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Barabas, O.' 1 ? primary 'Nemeth, V.' 2 ? primary 'Bodor, A.' 3 ? primary 'Perczel, A.' 4 ? primary 'Rosta, E.' 5 ? primary 'Kele, Z.' 6 ? primary 'Zagyva, I.' 7 ? primary 'Szabadka, Z.' 8 ? primary 'Grolmusz, V.I.' 9 ? primary 'Wilmanns, M.' 10 ? primary 'Vertessy, B.G.' 11 ? 1 'Barabas, O.' 12 ? 1 'Nemeth, V.' 13 ? 1 'Vertessy, B.G.' 14 ? # _cell.length_a 60.559 _cell.length_b 60.559 _cell.length_c 63.635 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3TPY _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 63' _symmetry.entry_id 3TPY _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 173 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDO HYDROLASE ; 16155.373 1 3.6.1.23 N1K 'dUTPase (catalytic) domain, UNP residues 608-759' ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 1 ? ? ? ? 4 non-polymer syn ;2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE ; 467.157 1 ? ? ? ? 5 non-polymer syn ;2'-DEOXYURIDINE 5'-MONOPHOSPHATE ; 308.182 1 ? ? ? ? 6 water nat water 18.015 131 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KRVEGPAPGPETSLWGSQLCSSQQKQPISKLTRATPGSAGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRS SITMKGLQVYPGVIDNDYTGEIKIMAKAVNNIVTVSQGNRIAQLILLPLIETDNKVQQPYRGQGSFGSSDIY ; _entity_poly.pdbx_seq_one_letter_code_can ;KRVEGPAPGPETSLWGSQLCSSQQKQPISKLTRATPGSAGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRS SITMKGLQVYPGVIDNDYTGEIKIMAKAVNNIVTVSQGNRIAQLILLPLIETDNKVQQPYRGQGSFGSSDIY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 ARG n 1 3 VAL n 1 4 GLU n 1 5 GLY n 1 6 PRO n 1 7 ALA n 1 8 PRO n 1 9 GLY n 1 10 PRO n 1 11 GLU n 1 12 THR n 1 13 SER n 1 14 LEU n 1 15 TRP n 1 16 GLY n 1 17 SER n 1 18 GLN n 1 19 LEU n 1 20 CYS n 1 21 SER n 1 22 SER n 1 23 GLN n 1 24 GLN n 1 25 LYS n 1 26 GLN n 1 27 PRO n 1 28 ILE n 1 29 SER n 1 30 LYS n 1 31 LEU n 1 32 THR n 1 33 ARG n 1 34 ALA n 1 35 THR n 1 36 PRO n 1 37 GLY n 1 38 SER n 1 39 ALA n 1 40 GLY n 1 41 LEU n 1 42 ASP n 1 43 LEU n 1 44 CYS n 1 45 SER n 1 46 THR n 1 47 SER n 1 48 HIS n 1 49 THR n 1 50 VAL n 1 51 LEU n 1 52 THR n 1 53 PRO n 1 54 GLU n 1 55 MET n 1 56 GLY n 1 57 PRO n 1 58 GLN n 1 59 ALA n 1 60 LEU n 1 61 SER n 1 62 THR n 1 63 GLY n 1 64 ILE n 1 65 TYR n 1 66 GLY n 1 67 PRO n 1 68 LEU n 1 69 PRO n 1 70 PRO n 1 71 ASN n 1 72 THR n 1 73 PHE n 1 74 GLY n 1 75 LEU n 1 76 ILE n 1 77 LEU n 1 78 GLY n 1 79 ARG n 1 80 SER n 1 81 SER n 1 82 ILE n 1 83 THR n 1 84 MET n 1 85 LYS n 1 86 GLY n 1 87 LEU n 1 88 GLN n 1 89 VAL n 1 90 TYR n 1 91 PRO n 1 92 GLY n 1 93 VAL n 1 94 ILE n 1 95 ASP n 1 96 ASN n 1 97 ASP n 1 98 TYR n 1 99 THR n 1 100 GLY n 1 101 GLU n 1 102 ILE n 1 103 LYS n 1 104 ILE n 1 105 MET n 1 106 ALA n 1 107 LYS n 1 108 ALA n 1 109 VAL n 1 110 ASN n 1 111 ASN n 1 112 ILE n 1 113 VAL n 1 114 THR n 1 115 VAL n 1 116 SER n 1 117 GLN n 1 118 GLY n 1 119 ASN n 1 120 ARG n 1 121 ILE n 1 122 ALA n 1 123 GLN n 1 124 LEU n 1 125 ILE n 1 126 LEU n 1 127 LEU n 1 128 PRO n 1 129 LEU n 1 130 ILE n 1 131 GLU n 1 132 THR n 1 133 ASP n 1 134 ASN n 1 135 LYS n 1 136 VAL n 1 137 GLN n 1 138 GLN n 1 139 PRO n 1 140 TYR n 1 141 ARG n 1 142 GLY n 1 143 GLN n 1 144 GLY n 1 145 SER n 1 146 PHE n 1 147 GLY n 1 148 SER n 1 149 SER n 1 150 ASP n 1 151 ILE n 1 152 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name MPMV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene gag-pro _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mason-Pfizer monkey virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11855 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET22B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O92810_MPMV _struct_ref.pdbx_db_accession O92810 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NRVEGPAPGPETSLWGSQLCSSQQKQPISKLTRATPGSAGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRS SITMKGLQVYPGVIDNDYTGEIKIMAKAVNNIVTVSQGNRIAQLILLPLIETDNKVQQPYRGQGSFGSSDIY ; _struct_ref.pdbx_align_begin 608 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3TPY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 152 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O92810 _struct_ref_seq.db_align_beg 608 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 759 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 152 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3TPY _struct_ref_seq_dif.mon_id LYS _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code O92810 _struct_ref_seq_dif.db_mon_id ASN _struct_ref_seq_dif.pdbx_seq_db_seq_num 608 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DUP non-polymer . ;2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE ; ? 'C9 H16 N3 O13 P3' 467.157 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UMP non-polymer . ;2'-DEOXYURIDINE 5'-MONOPHOSPHATE ; DUMP 'C9 H13 N2 O8 P' 308.182 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3TPY _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 41.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details 'PEG 8000, AMMONIUM CHLORIDE, TRIS, PH 8.5, vapor diffusion, hanging drop, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'MAR CCD 165 mm' 2003-02-09 mirrors 2 CCD 'ADSC QUANTUM 315r' 2003-03-18 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 'SINGLE WAVELENGTH' 'Si [111], horizontally focusing' 1 M x-ray 2 'SINGLE WAVELENGTH' ? 1 M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.8028 1.0 2 1.0720 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'EMBL/DESY, HAMBURG BEAMLINE X13' 0.8028 ? 'EMBL/DESY, HAMBURG' X13 2 SYNCHROTRON 'ESRF BEAMLINE ID14-4' 1.0720 ? ESRF ID14-4 # _reflns.entry_id 3TPY _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.0 _reflns.d_resolution_high 1.75 _reflns.d_resolution_low 20 _reflns.number_all 13399 _reflns.number_obs 13399 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rsym_value 0.032 _reflns.pdbx_netI_over_sigmaI 44.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 11.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_Rmerge_I_obs ? # _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.77 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs 4.4 _reflns_shell.pdbx_Rsym_value 0.402 _reflns_shell.pdbx_redundancy 11.3 _reflns_shell.number_unique_all 438 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.entry_id 3TPY _refine.ls_d_res_high 1.7500 _refine.ls_d_res_low 20.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.0300 _refine.ls_number_reflns_obs 12600 _refine.ls_number_reflns_all 13305 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.1536 _refine.ls_R_factor_R_work 0.1517 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1864 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.3000 _refine.ls_number_reflns_R_free 705 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 27.004 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model 'TLS and isotropic individual' _refine.aniso_B[1][1] 0.7900 _refine.aniso_B[2][2] 0.7900 _refine.aniso_B[3][3] -1.1900 _refine.aniso_B[1][2] 0.4000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9740 _refine.correlation_coeff_Fo_to_Fc_free 0.9520 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.0960 _refine.overall_SU_ML 0.0700 _refine.overall_SU_B 4.4800 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB entry 2D4L' _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 84.030 _refine.B_iso_min 6.870 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1,2 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_R_factor_all ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 831 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 57 _refine_hist.number_atoms_solvent 131 _refine_hist.number_atoms_total 1019 _refine_hist.d_res_high 1.7500 _refine_hist.d_res_low 20.0000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 921 0.018 0.022 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1266 1.957 2.085 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 114 5.745 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 26 35.517 25.769 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 155 15.274 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 3 28.651 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 158 0.118 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 630 0.008 0.020 ? ? 'X-RAY DIFFRACTION' r_nbd_refined 427 0.228 0.200 ? ? 'X-RAY DIFFRACTION' r_nbtor_refined 642 0.325 0.200 ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined 107 0.178 0.200 ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined 1 0.099 0.200 ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined 93 0.261 0.200 ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined 28 0.170 0.200 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 578 2.722 4.000 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 939 3.509 4.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 370 6.941 10.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 326 9.959 50.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.7500 _refine_ls_shell.d_res_low 1.7950 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.4500 _refine_ls_shell.number_reflns_R_work 908 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2160 _refine_ls_shell.R_factor_R_free 0.2480 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 956 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3TPY _struct.title ;Crystal structure of M-PMV dUTPase with a mixed population of substrate (dUPNPP) and post-inversion product (dUMP) in the active sites ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3TPY _struct_keywords.text 'jelly roll, hydrolase' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 29 ? LEU A 31 ? SER A 29 LEU A 31 5 ? 3 HELX_P HELX_P2 2 THR A 52 ? GLY A 56 ? THR A 52 GLY A 56 5 ? 5 HELX_P HELX_P3 3 ARG A 79 ? MET A 84 ? ARG A 79 MET A 84 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? E UMP . OP1 A ? ? 1_555 B MG . MG ? ? A UMP 154 A MG 999 1_555 ? ? ? ? ? ? ? 2.509 ? ? metalc2 metalc ? ? F HOH . O ? ? ? 1_555 B MG . MG ? ? A HOH 223 A MG 999 1_555 ? ? ? ? ? ? ? 2.163 ? ? metalc3 metalc ? ? F HOH . O ? ? ? 1_555 B MG . MG ? ? A HOH 225 A MG 999 1_555 ? ? ? ? ? ? ? 2.187 ? ? metalc4 metalc ? ? F HOH . O ? ? ? 1_555 B MG . MG ? ? A HOH 245 A MG 999 1_555 ? ? ? ? ? ? ? 1.892 ? ? metalc5 metalc ? ? D DUP . O2G B ? ? 1_555 B MG . MG ? ? A DUP 777 A MG 999 1_555 ? ? ? ? ? ? ? 2.109 ? ? metalc6 metalc ? ? D DUP . O1A B ? ? 1_555 B MG . MG ? ? A DUP 777 A MG 999 1_555 ? ? ? ? ? ? ? 2.148 ? ? metalc7 metalc ? ? D DUP . O1B B ? ? 1_555 B MG . MG ? ? A DUP 777 A MG 999 1_555 ? ? ? ? ? ? ? 2.303 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 66 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 66 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 67 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 67 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 8.96 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? C ? 2 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 26 ? PRO A 27 ? GLN A 26 PRO A 27 A 2 ILE A 64 ? TYR A 65 ? ILE A 64 TYR A 65 B 1 LEU A 41 ? CYS A 44 ? LEU A 41 CYS A 44 B 2 ARG A 120 ? PRO A 128 ? ARG A 120 PRO A 128 B 3 THR A 72 ? GLY A 78 ? THR A 72 GLY A 78 B 4 GLY A 92 ? ILE A 94 ? GLY A 92 ILE A 94 C 1 THR A 49 ? LEU A 51 ? THR A 49 LEU A 51 C 2 VAL A 113 ? VAL A 115 ? VAL A 113 VAL A 115 D 1 GLN A 58 ? LEU A 60 ? GLN A 58 LEU A 60 D 2 ILE A 104 ? ALA A 108 ? ILE A 104 ALA A 108 D 3 LEU A 87 ? VAL A 89 ? LEU A 87 VAL A 89 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 26 ? N GLN A 26 O TYR A 65 ? O TYR A 65 B 1 2 N LEU A 41 ? N LEU A 41 O LEU A 124 ? O LEU A 124 B 2 3 O ILE A 125 ? O ILE A 125 N LEU A 75 ? N LEU A 75 B 3 4 N GLY A 74 ? N GLY A 74 O ILE A 94 ? O ILE A 94 C 1 2 N THR A 49 ? N THR A 49 O VAL A 115 ? O VAL A 115 D 1 2 N LEU A 60 ? N LEU A 60 O ILE A 104 ? O ILE A 104 D 2 3 O LYS A 107 ? O LYS A 107 N GLN A 88 ? N GLN A 88 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 999 ? 5 'BINDING SITE FOR RESIDUE MG A 999' AC2 Software A TRS 153 ? 11 'BINDING SITE FOR RESIDUE TRS A 153' AC3 Software A DUP 777 ? 21 'BINDING SITE FOR RESIDUE DUP A 777' AC4 Software A UMP 154 ? 15 'BINDING SITE FOR RESIDUE UMP A 154' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 UMP E . ? UMP A 154 . ? 1_555 ? 2 AC1 5 HOH F . ? HOH A 223 . ? 1_555 ? 3 AC1 5 HOH F . ? HOH A 225 . ? 1_555 ? 4 AC1 5 HOH F . ? HOH A 245 . ? 1_555 ? 5 AC1 5 DUP D . ? DUP A 777 . ? 1_555 ? 6 AC2 11 GLN A 88 ? GLN A 88 . ? 2_775 ? 7 AC2 11 GLN A 88 ? GLN A 88 . ? 3_575 ? 8 AC2 11 GLN A 88 ? GLN A 88 . ? 1_555 ? 9 AC2 11 VAL A 89 ? VAL A 89 . ? 1_555 ? 10 AC2 11 VAL A 89 ? VAL A 89 . ? 2_775 ? 11 AC2 11 VAL A 89 ? VAL A 89 . ? 3_575 ? 12 AC2 11 TYR A 90 ? TYR A 90 . ? 1_555 ? 13 AC2 11 TYR A 90 ? TYR A 90 . ? 2_775 ? 14 AC2 11 PRO A 91 ? PRO A 91 . ? 1_555 ? 15 AC2 11 PRO A 91 ? PRO A 91 . ? 3_575 ? 16 AC2 11 PRO A 91 ? PRO A 91 . ? 2_775 ? 17 AC3 21 ILE A 76 ? ILE A 76 . ? 1_555 ? 18 AC3 21 ARG A 79 ? ARG A 79 . ? 3_575 ? 19 AC3 21 SER A 80 ? SER A 80 . ? 3_575 ? 20 AC3 21 SER A 81 ? SER A 81 . ? 3_575 ? 21 AC3 21 GLY A 92 ? GLY A 92 . ? 1_555 ? 22 AC3 21 VAL A 93 ? VAL A 93 . ? 1_555 ? 23 AC3 21 ILE A 94 ? ILE A 94 . ? 1_555 ? 24 AC3 21 ASP A 95 ? ASP A 95 . ? 1_555 ? 25 AC3 21 TYR A 98 ? TYR A 98 . ? 1_555 ? 26 AC3 21 GLU A 101 ? GLU A 101 . ? 1_555 ? 27 AC3 21 ILE A 102 ? ILE A 102 . ? 1_555 ? 28 AC3 21 LYS A 103 ? LYS A 103 . ? 1_555 ? 29 AC3 21 MET A 105 ? MET A 105 . ? 1_555 ? 30 AC3 21 GLN A 123 ? GLN A 123 . ? 3_575 ? 31 AC3 21 HOH F . ? HOH A 155 . ? 1_555 ? 32 AC3 21 HOH F . ? HOH A 160 . ? 1_555 ? 33 AC3 21 HOH F . ? HOH A 213 . ? 1_555 ? 34 AC3 21 HOH F . ? HOH A 223 . ? 1_555 ? 35 AC3 21 HOH F . ? HOH A 225 . ? 1_555 ? 36 AC3 21 HOH F . ? HOH A 270 . ? 1_555 ? 37 AC3 21 MG B . ? MG A 999 . ? 1_555 ? 38 AC4 15 ARG A 79 ? ARG A 79 . ? 3_575 ? 39 AC4 15 SER A 80 ? SER A 80 . ? 3_575 ? 40 AC4 15 GLY A 92 ? GLY A 92 . ? 1_555 ? 41 AC4 15 VAL A 93 ? VAL A 93 . ? 1_555 ? 42 AC4 15 ILE A 94 ? ILE A 94 . ? 1_555 ? 43 AC4 15 ASP A 95 ? ASP A 95 . ? 1_555 ? 44 AC4 15 TYR A 98 ? TYR A 98 . ? 1_555 ? 45 AC4 15 GLU A 101 ? GLU A 101 . ? 1_555 ? 46 AC4 15 ILE A 102 ? ILE A 102 . ? 1_555 ? 47 AC4 15 LYS A 103 ? LYS A 103 . ? 1_555 ? 48 AC4 15 MET A 105 ? MET A 105 . ? 1_555 ? 49 AC4 15 GLN A 123 ? GLN A 123 . ? 3_575 ? 50 AC4 15 HOH F . ? HOH A 155 . ? 1_555 ? 51 AC4 15 HOH F . ? HOH A 160 . ? 1_555 ? 52 AC4 15 MG B . ? MG A 999 . ? 1_555 ? # _atom_sites.entry_id 3TPY _atom_sites.fract_transf_matrix[1][1] 0.016513 _atom_sites.fract_transf_matrix[1][2] 0.009534 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019067 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015715 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 ? ? ? A . n A 1 2 ARG 2 2 ? ? ? A . n A 1 3 VAL 3 3 ? ? ? A . n A 1 4 GLU 4 4 ? ? ? A . n A 1 5 GLY 5 5 ? ? ? A . n A 1 6 PRO 6 6 ? ? ? A . n A 1 7 ALA 7 7 ? ? ? A . n A 1 8 PRO 8 8 ? ? ? A . n A 1 9 GLY 9 9 ? ? ? A . n A 1 10 PRO 10 10 ? ? ? A . n A 1 11 GLU 11 11 ? ? ? A . n A 1 12 THR 12 12 ? ? ? A . n A 1 13 SER 13 13 ? ? ? A . n A 1 14 LEU 14 14 ? ? ? A . n A 1 15 TRP 15 15 ? ? ? A . n A 1 16 GLY 16 16 ? ? ? A . n A 1 17 SER 17 17 ? ? ? A . n A 1 18 GLN 18 18 ? ? ? A . n A 1 19 LEU 19 19 ? ? ? A . n A 1 20 CYS 20 20 ? ? ? A . n A 1 21 SER 21 21 ? ? ? A . n A 1 22 SER 22 22 ? ? ? A . n A 1 23 GLN 23 23 ? ? ? A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 ARG 33 33 33 ARG ARG A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 CYS 44 44 44 CYS CYS A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 HIS 48 48 48 HIS HIS A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 MET 55 55 55 MET MET A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 MET 84 84 84 MET MET A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 ASN 96 96 96 ASN ASN A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 TYR 98 98 98 TYR TYR A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 ASN 110 110 110 ASN ASN A . n A 1 111 ASN 111 111 111 ASN ASN A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 THR 114 114 114 THR THR A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 GLN 117 117 117 GLN GLN A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 ARG 120 120 120 ARG ARG A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 GLN 123 123 123 GLN GLN A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 ILE 125 125 125 ILE ILE A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 PRO 128 128 128 PRO PRO A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 THR 132 132 132 THR THR A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 ASN 134 134 134 ASN ASN A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 GLN 137 137 ? ? ? A . n A 1 138 GLN 138 138 ? ? ? A . n A 1 139 PRO 139 139 ? ? ? A . n A 1 140 TYR 140 140 ? ? ? A . n A 1 141 ARG 141 141 ? ? ? A . n A 1 142 GLY 142 142 ? ? ? A . n A 1 143 GLN 143 143 ? ? ? A . n A 1 144 GLY 144 144 ? ? ? A . n A 1 145 SER 145 145 ? ? ? A . n A 1 146 PHE 146 146 ? ? ? A . n A 1 147 GLY 147 147 ? ? ? A . n A 1 148 SER 148 148 ? ? ? A . n A 1 149 SER 149 149 ? ? ? A . n A 1 150 ASP 150 150 ? ? ? A . n A 1 151 ILE 151 151 ? ? ? A . n A 1 152 TYR 152 152 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 999 999 MG MG A . C 3 TRS 1 153 1 TRS TRS A . D 4 DUP 1 777 777 DUP DUP A . E 5 UMP 1 154 777 UMP UMP A . F 6 HOH 1 155 1 HOH HOH A . F 6 HOH 2 156 2 HOH HOH A . F 6 HOH 3 157 3 HOH HOH A . F 6 HOH 4 158 4 HOH HOH A . F 6 HOH 5 159 5 HOH HOH A . F 6 HOH 6 160 6 HOH HOH A . F 6 HOH 7 161 7 HOH HOH A . F 6 HOH 8 162 8 HOH HOH A . F 6 HOH 9 163 9 HOH HOH A . F 6 HOH 10 164 10 HOH HOH A . F 6 HOH 11 165 11 HOH HOH A . F 6 HOH 12 166 12 HOH HOH A . F 6 HOH 13 167 13 HOH HOH A . F 6 HOH 14 168 14 HOH HOH A . F 6 HOH 15 169 15 HOH HOH A . F 6 HOH 16 170 16 HOH HOH A . F 6 HOH 17 171 17 HOH HOH A . F 6 HOH 18 172 18 HOH HOH A . F 6 HOH 19 173 19 HOH HOH A . F 6 HOH 20 174 20 HOH HOH A . F 6 HOH 21 175 21 HOH HOH A . F 6 HOH 22 176 22 HOH HOH A . F 6 HOH 23 177 23 HOH HOH A . F 6 HOH 24 178 24 HOH HOH A . F 6 HOH 25 179 25 HOH HOH A . F 6 HOH 26 180 26 HOH HOH A . F 6 HOH 27 181 27 HOH HOH A . F 6 HOH 28 182 28 HOH HOH A . F 6 HOH 29 183 29 HOH HOH A . F 6 HOH 30 184 30 HOH HOH A . F 6 HOH 31 185 31 HOH HOH A . F 6 HOH 32 186 32 HOH HOH A . F 6 HOH 33 187 33 HOH HOH A . F 6 HOH 34 188 34 HOH HOH A . F 6 HOH 35 189 35 HOH HOH A . F 6 HOH 36 190 36 HOH HOH A . F 6 HOH 37 191 37 HOH HOH A . F 6 HOH 38 192 38 HOH HOH A . F 6 HOH 39 193 39 HOH HOH A . F 6 HOH 40 194 40 HOH HOH A . F 6 HOH 41 195 41 HOH HOH A . F 6 HOH 42 196 42 HOH HOH A . F 6 HOH 43 197 43 HOH HOH A . F 6 HOH 44 198 44 HOH HOH A . F 6 HOH 45 199 45 HOH HOH A . F 6 HOH 46 200 46 HOH HOH A . F 6 HOH 47 201 47 HOH HOH A . F 6 HOH 48 202 48 HOH HOH A . F 6 HOH 49 203 49 HOH HOH A . F 6 HOH 50 204 50 HOH HOH A . F 6 HOH 51 205 52 HOH HOH A . F 6 HOH 52 206 53 HOH HOH A . F 6 HOH 53 207 54 HOH HOH A . F 6 HOH 54 208 55 HOH HOH A . F 6 HOH 55 209 56 HOH HOH A . F 6 HOH 56 210 57 HOH HOH A . F 6 HOH 57 211 58 HOH HOH A . F 6 HOH 58 212 59 HOH HOH A . F 6 HOH 59 213 61 HOH HOH A . F 6 HOH 60 214 62 HOH HOH A . F 6 HOH 61 215 64 HOH HOH A . F 6 HOH 62 216 65 HOH HOH A . F 6 HOH 63 217 66 HOH HOH A . F 6 HOH 64 218 67 HOH HOH A . F 6 HOH 65 219 70 HOH HOH A . F 6 HOH 66 220 72 HOH HOH A . F 6 HOH 67 221 73 HOH HOH A . F 6 HOH 68 222 74 HOH HOH A . F 6 HOH 69 223 75 HOH HOH A . F 6 HOH 70 224 76 HOH HOH A . F 6 HOH 71 225 77 HOH HOH A . F 6 HOH 72 226 78 HOH HOH A . F 6 HOH 73 227 79 HOH HOH A . F 6 HOH 74 228 80 HOH HOH A . F 6 HOH 75 229 81 HOH HOH A . F 6 HOH 76 230 82 HOH HOH A . F 6 HOH 77 231 83 HOH HOH A . F 6 HOH 78 232 84 HOH HOH A . F 6 HOH 79 233 85 HOH HOH A . F 6 HOH 80 234 86 HOH HOH A . F 6 HOH 81 235 87 HOH HOH A . F 6 HOH 82 236 89 HOH HOH A . F 6 HOH 83 237 90 HOH HOH A . F 6 HOH 84 238 91 HOH HOH A . F 6 HOH 85 239 92 HOH HOH A . F 6 HOH 86 240 93 HOH HOH A . F 6 HOH 87 241 94 HOH HOH A . F 6 HOH 88 242 95 HOH HOH A . F 6 HOH 89 243 96 HOH HOH A . F 6 HOH 90 244 97 HOH HOH A . F 6 HOH 91 245 98 HOH HOH A . F 6 HOH 92 246 99 HOH HOH A . F 6 HOH 93 247 100 HOH HOH A . F 6 HOH 94 248 101 HOH HOH A . F 6 HOH 95 249 102 HOH HOH A . F 6 HOH 96 250 103 HOH HOH A . F 6 HOH 97 251 104 HOH HOH A . F 6 HOH 98 252 105 HOH HOH A . F 6 HOH 99 253 106 HOH HOH A . F 6 HOH 100 254 107 HOH HOH A . F 6 HOH 101 255 108 HOH HOH A . F 6 HOH 102 256 109 HOH HOH A . F 6 HOH 103 257 110 HOH HOH A . F 6 HOH 104 258 111 HOH HOH A . F 6 HOH 105 259 112 HOH HOH A . F 6 HOH 106 260 113 HOH HOH A . F 6 HOH 107 261 114 HOH HOH A . F 6 HOH 108 262 115 HOH HOH A . F 6 HOH 109 263 116 HOH HOH A . F 6 HOH 110 264 117 HOH HOH A . F 6 HOH 111 265 118 HOH HOH A . F 6 HOH 112 266 119 HOH HOH A . F 6 HOH 113 267 120 HOH HOH A . F 6 HOH 114 268 121 HOH HOH A . F 6 HOH 115 269 122 HOH HOH A . F 6 HOH 116 270 123 HOH HOH A . F 6 HOH 117 271 124 HOH HOH A . F 6 HOH 118 272 125 HOH HOH A . F 6 HOH 119 273 126 HOH HOH A . F 6 HOH 120 274 127 HOH HOH A . F 6 HOH 121 275 128 HOH HOH A . F 6 HOH 122 276 129 HOH HOH A . F 6 HOH 123 277 130 HOH HOH A . F 6 HOH 124 278 131 HOH HOH A . F 6 HOH 125 279 132 HOH HOH A . F 6 HOH 126 280 133 HOH HOH A . F 6 HOH 127 281 134 HOH HOH A . F 6 HOH 128 282 135 HOH HOH A . F 6 HOH 129 283 136 HOH HOH A . F 6 HOH 130 284 138 HOH HOH A . F 6 HOH 131 285 139 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 11490 ? 1 MORE -85 ? 1 'SSA (A^2)' 13010 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_775 -y+2,x-y+2,z -0.5000000000 -0.8660254038 0.0000000000 60.5590000000 0.8660254038 -0.5000000000 0.0000000000 104.8912648556 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_575 -x+y,-x+2,z -0.5000000000 0.8660254038 0.0000000000 -60.5590000000 -0.8660254038 -0.5000000000 0.0000000000 104.8912648556 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A TRS 153 ? C TRS . 2 1 A TRS 153 ? C TRS . 3 1 A HOH 255 ? F HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 A E UMP . ? A UMP 154 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O ? F HOH . ? A HOH 223 ? 1_555 142.7 ? 2 OP1 A E UMP . ? A UMP 154 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O ? F HOH . ? A HOH 225 ? 1_555 122.9 ? 3 O ? F HOH . ? A HOH 223 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O ? F HOH . ? A HOH 225 ? 1_555 87.0 ? 4 OP1 A E UMP . ? A UMP 154 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O ? F HOH . ? A HOH 245 ? 1_555 120.6 ? 5 O ? F HOH . ? A HOH 223 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O ? F HOH . ? A HOH 245 ? 1_555 75.5 ? 6 O ? F HOH . ? A HOH 225 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O ? F HOH . ? A HOH 245 ? 1_555 91.2 ? 7 OP1 A E UMP . ? A UMP 154 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O2G B D DUP . ? A DUP 777 ? 1_555 67.8 ? 8 O ? F HOH . ? A HOH 223 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O2G B D DUP . ? A DUP 777 ? 1_555 97.2 ? 9 O ? F HOH . ? A HOH 225 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O2G B D DUP . ? A DUP 777 ? 1_555 84.1 ? 10 O ? F HOH . ? A HOH 245 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O2G B D DUP . ? A DUP 777 ? 1_555 171.5 ? 11 OP1 A E UMP . ? A UMP 154 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O1A B D DUP . ? A DUP 777 ? 1_555 25.7 ? 12 O ? F HOH . ? A HOH 223 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O1A B D DUP . ? A DUP 777 ? 1_555 167.9 ? 13 O ? F HOH . ? A HOH 225 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O1A B D DUP . ? A DUP 777 ? 1_555 100.8 ? 14 O ? F HOH . ? A HOH 245 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O1A B D DUP . ? A DUP 777 ? 1_555 113.2 ? 15 O2G B D DUP . ? A DUP 777 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O1A B D DUP . ? A DUP 777 ? 1_555 74.6 ? 16 OP1 A E UMP . ? A UMP 154 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O1B B D DUP . ? A DUP 777 ? 1_555 59.6 ? 17 O ? F HOH . ? A HOH 223 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O1B B D DUP . ? A DUP 777 ? 1_555 87.2 ? 18 O ? F HOH . ? A HOH 225 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O1B B D DUP . ? A DUP 777 ? 1_555 169.9 ? 19 O ? F HOH . ? A HOH 245 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O1B B D DUP . ? A DUP 777 ? 1_555 95.3 ? 20 O2G B D DUP . ? A DUP 777 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O1B B D DUP . ? A DUP 777 ? 1_555 88.5 ? 21 O1A B D DUP . ? A DUP 777 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O1B B D DUP . ? A DUP 777 ? 1_555 83.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-10-12 2 'Structure model' 1 1 2017-11-08 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' citation_author 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' diffrn_source 7 4 'Structure model' pdbx_initial_refinement_model 8 4 'Structure model' pdbx_struct_conn_angle 9 4 'Structure model' pdbx_struct_special_symmetry 10 4 'Structure model' struct_conn 11 4 'Structure model' struct_ref_seq_dif 12 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.name' 2 3 'Structure model' '_citation_author.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.value' 19 4 'Structure model' '_struct_conn.pdbx_dist_value' 20 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 21 4 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 22 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 4 'Structure model' '_struct_ref_seq_dif.details' 33 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 34 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 35 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 2.4828 _pdbx_refine_tls.origin_y 58.4914 _pdbx_refine_tls.origin_z 30.3186 _pdbx_refine_tls.T[1][1] -0.0134 _pdbx_refine_tls.T[2][2] -0.0332 _pdbx_refine_tls.T[3][3] 0.0000 _pdbx_refine_tls.T[1][2] -0.0020 _pdbx_refine_tls.T[1][3] -0.0037 _pdbx_refine_tls.T[2][3] 0.0271 _pdbx_refine_tls.L[1][1] 0.3333 _pdbx_refine_tls.L[2][2] 0.5083 _pdbx_refine_tls.L[3][3] 1.2644 _pdbx_refine_tls.L[1][2] -0.0124 _pdbx_refine_tls.L[1][3] -0.3999 _pdbx_refine_tls.L[2][3] 0.1761 _pdbx_refine_tls.S[1][1] 0.0153 _pdbx_refine_tls.S[2][2] 0.0321 _pdbx_refine_tls.S[3][3] -0.0474 _pdbx_refine_tls.S[1][2] -0.0398 _pdbx_refine_tls.S[1][3] -0.1026 _pdbx_refine_tls.S[2][3] 0.0370 _pdbx_refine_tls.S[2][1] -0.0033 _pdbx_refine_tls.S[3][1] 0.0352 _pdbx_refine_tls.S[3][2] 0.0322 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 24 A 136 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 A 777 A 777 ? . . . . ? 'X-RAY DIFFRACTION' 3 1 A 999 A 999 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.2.0005 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 MAR345 . ? ? ? ? 'data collection' ? ? ? 4 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 5 SCALA . ? ? ? ? 'data scaling' ? ? ? 6 SOLVE . ? ? ? ? phasing ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLY _pdbx_validate_close_contact.auth_seq_id_1 37 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 230 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.99 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 SER _pdbx_validate_rmsd_bond.auth_seq_id_1 45 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 SER _pdbx_validate_rmsd_bond.auth_seq_id_2 45 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.500 _pdbx_validate_rmsd_bond.bond_target_value 1.418 _pdbx_validate_rmsd_bond.bond_deviation 0.082 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.013 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 24 ? CD ? A GLN 24 CD 2 1 Y 1 A GLN 24 ? OE1 ? A GLN 24 OE1 3 1 Y 1 A GLN 24 ? NE2 ? A GLN 24 NE2 4 1 Y 1 A LYS 85 ? CE ? A LYS 85 CE 5 1 Y 1 A LYS 85 ? NZ ? A LYS 85 NZ 6 1 Y 1 A LYS 135 ? CE ? A LYS 135 CE 7 1 Y 1 A LYS 135 ? NZ ? A LYS 135 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 1 ? A LYS 1 2 1 Y 1 A ARG 2 ? A ARG 2 3 1 Y 1 A VAL 3 ? A VAL 3 4 1 Y 1 A GLU 4 ? A GLU 4 5 1 Y 1 A GLY 5 ? A GLY 5 6 1 Y 1 A PRO 6 ? A PRO 6 7 1 Y 1 A ALA 7 ? A ALA 7 8 1 Y 1 A PRO 8 ? A PRO 8 9 1 Y 1 A GLY 9 ? A GLY 9 10 1 Y 1 A PRO 10 ? A PRO 10 11 1 Y 1 A GLU 11 ? A GLU 11 12 1 Y 1 A THR 12 ? A THR 12 13 1 Y 1 A SER 13 ? A SER 13 14 1 Y 1 A LEU 14 ? A LEU 14 15 1 Y 1 A TRP 15 ? A TRP 15 16 1 Y 1 A GLY 16 ? A GLY 16 17 1 Y 1 A SER 17 ? A SER 17 18 1 Y 1 A GLN 18 ? A GLN 18 19 1 Y 1 A LEU 19 ? A LEU 19 20 1 Y 1 A CYS 20 ? A CYS 20 21 1 Y 1 A SER 21 ? A SER 21 22 1 Y 1 A SER 22 ? A SER 22 23 1 Y 1 A GLN 23 ? A GLN 23 24 1 Y 1 A GLN 137 ? A GLN 137 25 1 Y 1 A GLN 138 ? A GLN 138 26 1 Y 1 A PRO 139 ? A PRO 139 27 1 Y 1 A TYR 140 ? A TYR 140 28 1 Y 1 A ARG 141 ? A ARG 141 29 1 Y 1 A GLY 142 ? A GLY 142 30 1 Y 1 A GLN 143 ? A GLN 143 31 1 Y 1 A GLY 144 ? A GLY 144 32 1 Y 1 A SER 145 ? A SER 145 33 1 Y 1 A PHE 146 ? A PHE 146 34 1 Y 1 A GLY 147 ? A GLY 147 35 1 Y 1 A SER 148 ? A SER 148 36 1 Y 1 A SER 149 ? A SER 149 37 1 Y 1 A ASP 150 ? A ASP 150 38 1 Y 1 A ILE 151 ? A ILE 151 39 1 Y 1 A TYR 152 ? A TYR 152 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DUP O4 O N N 88 DUP C4 C Y N 89 DUP C5 C Y N 90 DUP C6 C Y N 91 DUP N3 N Y N 92 DUP C2 C Y N 93 DUP O2 O N N 94 DUP N1 N Y N 95 DUP "C1'" C N R 96 DUP "C2'" C N N 97 DUP "C3'" C N S 98 DUP "O3'" O N N 99 DUP "O4'" O N N 100 DUP "C4'" C N R 101 DUP "C5'" C N N 102 DUP "O5'" O N N 103 DUP PA P N S 104 DUP O1A O N N 105 DUP O2A O N N 106 DUP N3A N N N 107 DUP PB P N R 108 DUP O1B O N N 109 DUP O2B O N N 110 DUP O3B O N N 111 DUP PG P N N 112 DUP O2G O N N 113 DUP O1G O N N 114 DUP O3G O N N 115 DUP H5 H N N 116 DUP H6 H N N 117 DUP HN3 H N N 118 DUP "H1'" H N N 119 DUP "H2'1" H N N 120 DUP "H2'2" H N N 121 DUP H1 H N N 122 DUP "H3'" H N N 123 DUP "H4'" H N N 124 DUP "H5'1" H N N 125 DUP "H5'2" H N N 126 DUP H2A H N N 127 DUP H3A H N N 128 DUP H2B H N N 129 DUP H1G H N N 130 DUP H3G H N N 131 GLN N N N N 132 GLN CA C N S 133 GLN C C N N 134 GLN O O N N 135 GLN CB C N N 136 GLN CG C N N 137 GLN CD C N N 138 GLN OE1 O N N 139 GLN NE2 N N N 140 GLN OXT O N N 141 GLN H H N N 142 GLN H2 H N N 143 GLN HA H N N 144 GLN HB2 H N N 145 GLN HB3 H N N 146 GLN HG2 H N N 147 GLN HG3 H N N 148 GLN HE21 H N N 149 GLN HE22 H N N 150 GLN HXT H N N 151 GLU N N N N 152 GLU CA C N S 153 GLU C C N N 154 GLU O O N N 155 GLU CB C N N 156 GLU CG C N N 157 GLU CD C N N 158 GLU OE1 O N N 159 GLU OE2 O N N 160 GLU OXT O N N 161 GLU H H N N 162 GLU H2 H N N 163 GLU HA H N N 164 GLU HB2 H N N 165 GLU HB3 H N N 166 GLU HG2 H N N 167 GLU HG3 H N N 168 GLU HE2 H N N 169 GLU HXT H N N 170 GLY N N N N 171 GLY CA C N N 172 GLY C C N N 173 GLY O O N N 174 GLY OXT O N N 175 GLY H H N N 176 GLY H2 H N N 177 GLY HA2 H N N 178 GLY HA3 H N N 179 GLY HXT H N N 180 HIS N N N N 181 HIS CA C N S 182 HIS C C N N 183 HIS O O N N 184 HIS CB C N N 185 HIS CG C Y N 186 HIS ND1 N Y N 187 HIS CD2 C Y N 188 HIS CE1 C Y N 189 HIS NE2 N Y N 190 HIS OXT O N N 191 HIS H H N N 192 HIS H2 H N N 193 HIS HA H N N 194 HIS HB2 H N N 195 HIS HB3 H N N 196 HIS HD1 H N N 197 HIS HD2 H N N 198 HIS HE1 H N N 199 HIS HE2 H N N 200 HIS HXT H N N 201 HOH O O N N 202 HOH H1 H N N 203 HOH H2 H N N 204 ILE N N N N 205 ILE CA C N S 206 ILE C C N N 207 ILE O O N N 208 ILE CB C N S 209 ILE CG1 C N N 210 ILE CG2 C N N 211 ILE CD1 C N N 212 ILE OXT O N N 213 ILE H H N N 214 ILE H2 H N N 215 ILE HA H N N 216 ILE HB H N N 217 ILE HG12 H N N 218 ILE HG13 H N N 219 ILE HG21 H N N 220 ILE HG22 H N N 221 ILE HG23 H N N 222 ILE HD11 H N N 223 ILE HD12 H N N 224 ILE HD13 H N N 225 ILE HXT H N N 226 LEU N N N N 227 LEU CA C N S 228 LEU C C N N 229 LEU O O N N 230 LEU CB C N N 231 LEU CG C N N 232 LEU CD1 C N N 233 LEU CD2 C N N 234 LEU OXT O N N 235 LEU H H N N 236 LEU H2 H N N 237 LEU HA H N N 238 LEU HB2 H N N 239 LEU HB3 H N N 240 LEU HG H N N 241 LEU HD11 H N N 242 LEU HD12 H N N 243 LEU HD13 H N N 244 LEU HD21 H N N 245 LEU HD22 H N N 246 LEU HD23 H N N 247 LEU HXT H N N 248 LYS N N N N 249 LYS CA C N S 250 LYS C C N N 251 LYS O O N N 252 LYS CB C N N 253 LYS CG C N N 254 LYS CD C N N 255 LYS CE C N N 256 LYS NZ N N N 257 LYS OXT O N N 258 LYS H H N N 259 LYS H2 H N N 260 LYS HA H N N 261 LYS HB2 H N N 262 LYS HB3 H N N 263 LYS HG2 H N N 264 LYS HG3 H N N 265 LYS HD2 H N N 266 LYS HD3 H N N 267 LYS HE2 H N N 268 LYS HE3 H N N 269 LYS HZ1 H N N 270 LYS HZ2 H N N 271 LYS HZ3 H N N 272 LYS HXT H N N 273 MET N N N N 274 MET CA C N S 275 MET C C N N 276 MET O O N N 277 MET CB C N N 278 MET CG C N N 279 MET SD S N N 280 MET CE C N N 281 MET OXT O N N 282 MET H H N N 283 MET H2 H N N 284 MET HA H N N 285 MET HB2 H N N 286 MET HB3 H N N 287 MET HG2 H N N 288 MET HG3 H N N 289 MET HE1 H N N 290 MET HE2 H N N 291 MET HE3 H N N 292 MET HXT H N N 293 MG MG MG N N 294 PHE N N N N 295 PHE CA C N S 296 PHE C C N N 297 PHE O O N N 298 PHE CB C N N 299 PHE CG C Y N 300 PHE CD1 C Y N 301 PHE CD2 C Y N 302 PHE CE1 C Y N 303 PHE CE2 C Y N 304 PHE CZ C Y N 305 PHE OXT O N N 306 PHE H H N N 307 PHE H2 H N N 308 PHE HA H N N 309 PHE HB2 H N N 310 PHE HB3 H N N 311 PHE HD1 H N N 312 PHE HD2 H N N 313 PHE HE1 H N N 314 PHE HE2 H N N 315 PHE HZ H N N 316 PHE HXT H N N 317 PRO N N N N 318 PRO CA C N S 319 PRO C C N N 320 PRO O O N N 321 PRO CB C N N 322 PRO CG C N N 323 PRO CD C N N 324 PRO OXT O N N 325 PRO H H N N 326 PRO HA H N N 327 PRO HB2 H N N 328 PRO HB3 H N N 329 PRO HG2 H N N 330 PRO HG3 H N N 331 PRO HD2 H N N 332 PRO HD3 H N N 333 PRO HXT H N N 334 SER N N N N 335 SER CA C N S 336 SER C C N N 337 SER O O N N 338 SER CB C N N 339 SER OG O N N 340 SER OXT O N N 341 SER H H N N 342 SER H2 H N N 343 SER HA H N N 344 SER HB2 H N N 345 SER HB3 H N N 346 SER HG H N N 347 SER HXT H N N 348 THR N N N N 349 THR CA C N S 350 THR C C N N 351 THR O O N N 352 THR CB C N R 353 THR OG1 O N N 354 THR CG2 C N N 355 THR OXT O N N 356 THR H H N N 357 THR H2 H N N 358 THR HA H N N 359 THR HB H N N 360 THR HG1 H N N 361 THR HG21 H N N 362 THR HG22 H N N 363 THR HG23 H N N 364 THR HXT H N N 365 TRP N N N N 366 TRP CA C N S 367 TRP C C N N 368 TRP O O N N 369 TRP CB C N N 370 TRP CG C Y N 371 TRP CD1 C Y N 372 TRP CD2 C Y N 373 TRP NE1 N Y N 374 TRP CE2 C Y N 375 TRP CE3 C Y N 376 TRP CZ2 C Y N 377 TRP CZ3 C Y N 378 TRP CH2 C Y N 379 TRP OXT O N N 380 TRP H H N N 381 TRP H2 H N N 382 TRP HA H N N 383 TRP HB2 H N N 384 TRP HB3 H N N 385 TRP HD1 H N N 386 TRP HE1 H N N 387 TRP HE3 H N N 388 TRP HZ2 H N N 389 TRP HZ3 H N N 390 TRP HH2 H N N 391 TRP HXT H N N 392 TRS C C N N 393 TRS C1 C N N 394 TRS C2 C N N 395 TRS C3 C N N 396 TRS N N N N 397 TRS O1 O N N 398 TRS O2 O N N 399 TRS O3 O N N 400 TRS H11 H N N 401 TRS H12 H N N 402 TRS H21 H N N 403 TRS H22 H N N 404 TRS H31 H N N 405 TRS H32 H N N 406 TRS HN1 H N N 407 TRS HN2 H N N 408 TRS HN3 H N N 409 TRS HO1 H N N 410 TRS HO2 H N N 411 TRS HO3 H N N 412 TYR N N N N 413 TYR CA C N S 414 TYR C C N N 415 TYR O O N N 416 TYR CB C N N 417 TYR CG C Y N 418 TYR CD1 C Y N 419 TYR CD2 C Y N 420 TYR CE1 C Y N 421 TYR CE2 C Y N 422 TYR CZ C Y N 423 TYR OH O N N 424 TYR OXT O N N 425 TYR H H N N 426 TYR H2 H N N 427 TYR HA H N N 428 TYR HB2 H N N 429 TYR HB3 H N N 430 TYR HD1 H N N 431 TYR HD2 H N N 432 TYR HE1 H N N 433 TYR HE2 H N N 434 TYR HH H N N 435 TYR HXT H N N 436 UMP N1 N N N 437 UMP C2 C N N 438 UMP N3 N N N 439 UMP C4 C N N 440 UMP C5 C N N 441 UMP C6 C N N 442 UMP O2 O N N 443 UMP O4 O N N 444 UMP "C1'" C N R 445 UMP "C2'" C N N 446 UMP "C3'" C N S 447 UMP "C4'" C N R 448 UMP "O3'" O N N 449 UMP "O4'" O N N 450 UMP "C5'" C N N 451 UMP "O5'" O N N 452 UMP P P N N 453 UMP OP1 O N N 454 UMP OP2 O N N 455 UMP OP3 O N N 456 UMP HN3 H N N 457 UMP H5 H N N 458 UMP H6 H N N 459 UMP "H1'" H N N 460 UMP "H2'" H N N 461 UMP "H2''" H N N 462 UMP "H3'" H N N 463 UMP "H4'" H N N 464 UMP "HO3'" H N N 465 UMP "H5'" H N N 466 UMP "H5''" H N N 467 UMP HOP2 H N N 468 UMP HOP3 H N N 469 VAL N N N N 470 VAL CA C N S 471 VAL C C N N 472 VAL O O N N 473 VAL CB C N N 474 VAL CG1 C N N 475 VAL CG2 C N N 476 VAL OXT O N N 477 VAL H H N N 478 VAL H2 H N N 479 VAL HA H N N 480 VAL HB H N N 481 VAL HG11 H N N 482 VAL HG12 H N N 483 VAL HG13 H N N 484 VAL HG21 H N N 485 VAL HG22 H N N 486 VAL HG23 H N N 487 VAL HXT H N N 488 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DUP O4 C4 doub N N 83 DUP C4 C5 sing Y N 84 DUP C4 N3 sing Y N 85 DUP C5 C6 doub Y N 86 DUP C5 H5 sing N N 87 DUP C6 N1 sing Y N 88 DUP C6 H6 sing N N 89 DUP N3 C2 sing Y N 90 DUP N3 HN3 sing N N 91 DUP C2 O2 doub N N 92 DUP C2 N1 sing Y N 93 DUP N1 "C1'" sing N N 94 DUP "C1'" "C2'" sing N N 95 DUP "C1'" "O4'" sing N N 96 DUP "C1'" "H1'" sing N N 97 DUP "C2'" "C3'" sing N N 98 DUP "C2'" "H2'1" sing N N 99 DUP "C2'" "H2'2" sing N N 100 DUP "C3'" "O3'" sing N N 101 DUP "C3'" "C4'" sing N N 102 DUP "C3'" H1 sing N N 103 DUP "O3'" "H3'" sing N N 104 DUP "O4'" "C4'" sing N N 105 DUP "C4'" "C5'" sing N N 106 DUP "C4'" "H4'" sing N N 107 DUP "C5'" "O5'" sing N N 108 DUP "C5'" "H5'1" sing N N 109 DUP "C5'" "H5'2" sing N N 110 DUP "O5'" PA sing N N 111 DUP PA O1A doub N N 112 DUP PA O2A sing N N 113 DUP PA N3A sing N N 114 DUP O2A H2A sing N N 115 DUP N3A PB sing N N 116 DUP N3A H3A sing N N 117 DUP PB O1B doub N N 118 DUP PB O2B sing N N 119 DUP PB O3B sing N N 120 DUP O2B H2B sing N N 121 DUP O3B PG sing N N 122 DUP PG O2G doub N N 123 DUP PG O1G sing N N 124 DUP PG O3G sing N N 125 DUP O1G H1G sing N N 126 DUP O3G H3G sing N N 127 GLN N CA sing N N 128 GLN N H sing N N 129 GLN N H2 sing N N 130 GLN CA C sing N N 131 GLN CA CB sing N N 132 GLN CA HA sing N N 133 GLN C O doub N N 134 GLN C OXT sing N N 135 GLN CB CG sing N N 136 GLN CB HB2 sing N N 137 GLN CB HB3 sing N N 138 GLN CG CD sing N N 139 GLN CG HG2 sing N N 140 GLN CG HG3 sing N N 141 GLN CD OE1 doub N N 142 GLN CD NE2 sing N N 143 GLN NE2 HE21 sing N N 144 GLN NE2 HE22 sing N N 145 GLN OXT HXT sing N N 146 GLU N CA sing N N 147 GLU N H sing N N 148 GLU N H2 sing N N 149 GLU CA C sing N N 150 GLU CA CB sing N N 151 GLU CA HA sing N N 152 GLU C O doub N N 153 GLU C OXT sing N N 154 GLU CB CG sing N N 155 GLU CB HB2 sing N N 156 GLU CB HB3 sing N N 157 GLU CG CD sing N N 158 GLU CG HG2 sing N N 159 GLU CG HG3 sing N N 160 GLU CD OE1 doub N N 161 GLU CD OE2 sing N N 162 GLU OE2 HE2 sing N N 163 GLU OXT HXT sing N N 164 GLY N CA sing N N 165 GLY N H sing N N 166 GLY N H2 sing N N 167 GLY CA C sing N N 168 GLY CA HA2 sing N N 169 GLY CA HA3 sing N N 170 GLY C O doub N N 171 GLY C OXT sing N N 172 GLY OXT HXT sing N N 173 HIS N CA sing N N 174 HIS N H sing N N 175 HIS N H2 sing N N 176 HIS CA C sing N N 177 HIS CA CB sing N N 178 HIS CA HA sing N N 179 HIS C O doub N N 180 HIS C OXT sing N N 181 HIS CB CG sing N N 182 HIS CB HB2 sing N N 183 HIS CB HB3 sing N N 184 HIS CG ND1 sing Y N 185 HIS CG CD2 doub Y N 186 HIS ND1 CE1 doub Y N 187 HIS ND1 HD1 sing N N 188 HIS CD2 NE2 sing Y N 189 HIS CD2 HD2 sing N N 190 HIS CE1 NE2 sing Y N 191 HIS CE1 HE1 sing N N 192 HIS NE2 HE2 sing N N 193 HIS OXT HXT sing N N 194 HOH O H1 sing N N 195 HOH O H2 sing N N 196 ILE N CA sing N N 197 ILE N H sing N N 198 ILE N H2 sing N N 199 ILE CA C sing N N 200 ILE CA CB sing N N 201 ILE CA HA sing N N 202 ILE C O doub N N 203 ILE C OXT sing N N 204 ILE CB CG1 sing N N 205 ILE CB CG2 sing N N 206 ILE CB HB sing N N 207 ILE CG1 CD1 sing N N 208 ILE CG1 HG12 sing N N 209 ILE CG1 HG13 sing N N 210 ILE CG2 HG21 sing N N 211 ILE CG2 HG22 sing N N 212 ILE CG2 HG23 sing N N 213 ILE CD1 HD11 sing N N 214 ILE CD1 HD12 sing N N 215 ILE CD1 HD13 sing N N 216 ILE OXT HXT sing N N 217 LEU N CA sing N N 218 LEU N H sing N N 219 LEU N H2 sing N N 220 LEU CA C sing N N 221 LEU CA CB sing N N 222 LEU CA HA sing N N 223 LEU C O doub N N 224 LEU C OXT sing N N 225 LEU CB CG sing N N 226 LEU CB HB2 sing N N 227 LEU CB HB3 sing N N 228 LEU CG CD1 sing N N 229 LEU CG CD2 sing N N 230 LEU CG HG sing N N 231 LEU CD1 HD11 sing N N 232 LEU CD1 HD12 sing N N 233 LEU CD1 HD13 sing N N 234 LEU CD2 HD21 sing N N 235 LEU CD2 HD22 sing N N 236 LEU CD2 HD23 sing N N 237 LEU OXT HXT sing N N 238 LYS N CA sing N N 239 LYS N H sing N N 240 LYS N H2 sing N N 241 LYS CA C sing N N 242 LYS CA CB sing N N 243 LYS CA HA sing N N 244 LYS C O doub N N 245 LYS C OXT sing N N 246 LYS CB CG sing N N 247 LYS CB HB2 sing N N 248 LYS CB HB3 sing N N 249 LYS CG CD sing N N 250 LYS CG HG2 sing N N 251 LYS CG HG3 sing N N 252 LYS CD CE sing N N 253 LYS CD HD2 sing N N 254 LYS CD HD3 sing N N 255 LYS CE NZ sing N N 256 LYS CE HE2 sing N N 257 LYS CE HE3 sing N N 258 LYS NZ HZ1 sing N N 259 LYS NZ HZ2 sing N N 260 LYS NZ HZ3 sing N N 261 LYS OXT HXT sing N N 262 MET N CA sing N N 263 MET N H sing N N 264 MET N H2 sing N N 265 MET CA C sing N N 266 MET CA CB sing N N 267 MET CA HA sing N N 268 MET C O doub N N 269 MET C OXT sing N N 270 MET CB CG sing N N 271 MET CB HB2 sing N N 272 MET CB HB3 sing N N 273 MET CG SD sing N N 274 MET CG HG2 sing N N 275 MET CG HG3 sing N N 276 MET SD CE sing N N 277 MET CE HE1 sing N N 278 MET CE HE2 sing N N 279 MET CE HE3 sing N N 280 MET OXT HXT sing N N 281 PHE N CA sing N N 282 PHE N H sing N N 283 PHE N H2 sing N N 284 PHE CA C sing N N 285 PHE CA CB sing N N 286 PHE CA HA sing N N 287 PHE C O doub N N 288 PHE C OXT sing N N 289 PHE CB CG sing N N 290 PHE CB HB2 sing N N 291 PHE CB HB3 sing N N 292 PHE CG CD1 doub Y N 293 PHE CG CD2 sing Y N 294 PHE CD1 CE1 sing Y N 295 PHE CD1 HD1 sing N N 296 PHE CD2 CE2 doub Y N 297 PHE CD2 HD2 sing N N 298 PHE CE1 CZ doub Y N 299 PHE CE1 HE1 sing N N 300 PHE CE2 CZ sing Y N 301 PHE CE2 HE2 sing N N 302 PHE CZ HZ sing N N 303 PHE OXT HXT sing N N 304 PRO N CA sing N N 305 PRO N CD sing N N 306 PRO N H sing N N 307 PRO CA C sing N N 308 PRO CA CB sing N N 309 PRO CA HA sing N N 310 PRO C O doub N N 311 PRO C OXT sing N N 312 PRO CB CG sing N N 313 PRO CB HB2 sing N N 314 PRO CB HB3 sing N N 315 PRO CG CD sing N N 316 PRO CG HG2 sing N N 317 PRO CG HG3 sing N N 318 PRO CD HD2 sing N N 319 PRO CD HD3 sing N N 320 PRO OXT HXT sing N N 321 SER N CA sing N N 322 SER N H sing N N 323 SER N H2 sing N N 324 SER CA C sing N N 325 SER CA CB sing N N 326 SER CA HA sing N N 327 SER C O doub N N 328 SER C OXT sing N N 329 SER CB OG sing N N 330 SER CB HB2 sing N N 331 SER CB HB3 sing N N 332 SER OG HG sing N N 333 SER OXT HXT sing N N 334 THR N CA sing N N 335 THR N H sing N N 336 THR N H2 sing N N 337 THR CA C sing N N 338 THR CA CB sing N N 339 THR CA HA sing N N 340 THR C O doub N N 341 THR C OXT sing N N 342 THR CB OG1 sing N N 343 THR CB CG2 sing N N 344 THR CB HB sing N N 345 THR OG1 HG1 sing N N 346 THR CG2 HG21 sing N N 347 THR CG2 HG22 sing N N 348 THR CG2 HG23 sing N N 349 THR OXT HXT sing N N 350 TRP N CA sing N N 351 TRP N H sing N N 352 TRP N H2 sing N N 353 TRP CA C sing N N 354 TRP CA CB sing N N 355 TRP CA HA sing N N 356 TRP C O doub N N 357 TRP C OXT sing N N 358 TRP CB CG sing N N 359 TRP CB HB2 sing N N 360 TRP CB HB3 sing N N 361 TRP CG CD1 doub Y N 362 TRP CG CD2 sing Y N 363 TRP CD1 NE1 sing Y N 364 TRP CD1 HD1 sing N N 365 TRP CD2 CE2 doub Y N 366 TRP CD2 CE3 sing Y N 367 TRP NE1 CE2 sing Y N 368 TRP NE1 HE1 sing N N 369 TRP CE2 CZ2 sing Y N 370 TRP CE3 CZ3 doub Y N 371 TRP CE3 HE3 sing N N 372 TRP CZ2 CH2 doub Y N 373 TRP CZ2 HZ2 sing N N 374 TRP CZ3 CH2 sing Y N 375 TRP CZ3 HZ3 sing N N 376 TRP CH2 HH2 sing N N 377 TRP OXT HXT sing N N 378 TRS C C1 sing N N 379 TRS C C2 sing N N 380 TRS C C3 sing N N 381 TRS C N sing N N 382 TRS C1 O1 sing N N 383 TRS C1 H11 sing N N 384 TRS C1 H12 sing N N 385 TRS C2 O2 sing N N 386 TRS C2 H21 sing N N 387 TRS C2 H22 sing N N 388 TRS C3 O3 sing N N 389 TRS C3 H31 sing N N 390 TRS C3 H32 sing N N 391 TRS N HN1 sing N N 392 TRS N HN2 sing N N 393 TRS N HN3 sing N N 394 TRS O1 HO1 sing N N 395 TRS O2 HO2 sing N N 396 TRS O3 HO3 sing N N 397 TYR N CA sing N N 398 TYR N H sing N N 399 TYR N H2 sing N N 400 TYR CA C sing N N 401 TYR CA CB sing N N 402 TYR CA HA sing N N 403 TYR C O doub N N 404 TYR C OXT sing N N 405 TYR CB CG sing N N 406 TYR CB HB2 sing N N 407 TYR CB HB3 sing N N 408 TYR CG CD1 doub Y N 409 TYR CG CD2 sing Y N 410 TYR CD1 CE1 sing Y N 411 TYR CD1 HD1 sing N N 412 TYR CD2 CE2 doub Y N 413 TYR CD2 HD2 sing N N 414 TYR CE1 CZ doub Y N 415 TYR CE1 HE1 sing N N 416 TYR CE2 CZ sing Y N 417 TYR CE2 HE2 sing N N 418 TYR CZ OH sing N N 419 TYR OH HH sing N N 420 TYR OXT HXT sing N N 421 UMP N1 C2 sing N N 422 UMP N1 C6 sing N N 423 UMP N1 "C1'" sing N N 424 UMP C2 N3 sing N N 425 UMP C2 O2 doub N N 426 UMP N3 C4 sing N N 427 UMP N3 HN3 sing N N 428 UMP C4 C5 sing N N 429 UMP C4 O4 doub N N 430 UMP C5 C6 doub N N 431 UMP C5 H5 sing N N 432 UMP C6 H6 sing N N 433 UMP "C1'" "C2'" sing N N 434 UMP "C1'" "O4'" sing N N 435 UMP "C1'" "H1'" sing N N 436 UMP "C2'" "C3'" sing N N 437 UMP "C2'" "H2'" sing N N 438 UMP "C2'" "H2''" sing N N 439 UMP "C3'" "C4'" sing N N 440 UMP "C3'" "O3'" sing N N 441 UMP "C3'" "H3'" sing N N 442 UMP "C4'" "O4'" sing N N 443 UMP "C4'" "C5'" sing N N 444 UMP "C4'" "H4'" sing N N 445 UMP "O3'" "HO3'" sing N N 446 UMP "C5'" "O5'" sing N N 447 UMP "C5'" "H5'" sing N N 448 UMP "C5'" "H5''" sing N N 449 UMP "O5'" P sing N N 450 UMP P OP1 doub N N 451 UMP P OP2 sing N N 452 UMP P OP3 sing N N 453 UMP OP2 HOP2 sing N N 454 UMP OP3 HOP3 sing N N 455 VAL N CA sing N N 456 VAL N H sing N N 457 VAL N H2 sing N N 458 VAL CA C sing N N 459 VAL CA CB sing N N 460 VAL CA HA sing N N 461 VAL C O doub N N 462 VAL C OXT sing N N 463 VAL CB CG1 sing N N 464 VAL CB CG2 sing N N 465 VAL CB HB sing N N 466 VAL CG1 HG11 sing N N 467 VAL CG1 HG12 sing N N 468 VAL CG1 HG13 sing N N 469 VAL CG2 HG21 sing N N 470 VAL CG2 HG22 sing N N 471 VAL CG2 HG23 sing N N 472 VAL OXT HXT sing N N 473 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRS 4 ;2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE ; DUP 5 ;2'-DEOXYURIDINE 5'-MONOPHOSPHATE ; UMP 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2D4L _pdbx_initial_refinement_model.details 'PDB entry 2D4L' #