HEADER TRANSFERASE 09-SEP-11 3TQK TITLE STRUCTURE OF PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE FROM TITLE 2 FRANCISELLA TULARENSIS SCHU S4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE, DAHP COMPND 5 SYNTHASE, PHOSPHO-2-KETO-3-DEOXYHEPTONATE ALDOLASE; COMPND 6 EC: 2.5.1.54; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS; SOURCE 3 ORGANISM_TAXID: 119856; SOURCE 4 STRAIN: TULARENSIS; SOURCE 5 GENE: AROG, FTT_0963C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.FRANKLIN,J.CHEUNG,M.RUDOLPH,M.CASSIDY,E.GARY,F.BURSHTEYN,J.LOVE REVDAT 3 27-NOV-24 3TQK 1 REMARK SEQADV LINK REVDAT 2 20-AUG-14 3TQK 1 JRNL REVDAT 1 21-SEP-11 3TQK 0 JRNL AUTH S.CHAUDHURY,M.D.ABDULHAMEED,N.SINGH,G.J.TAWA, JRNL AUTH 2 P.M.D'HAESELEER,A.T.ZEMLA,A.NAVID,C.E.ZHOU,M.C.FRANKLIN, JRNL AUTH 3 J.CHEUNG,M.J.RUDOLPH,J.LOVE,J.F.GRAF,D.A.ROZAK, JRNL AUTH 4 J.L.DANKMEYER,K.AMEMIYA,S.DAEFLER,A.WALLQVIST JRNL TITL RAPID COUNTERMEASURE DISCOVERY AGAINST FRANCISELLA JRNL TITL 2 TULARENSIS BASED ON A METABOLIC NETWORK RECONSTRUCTION. JRNL REF PLOS ONE V. 8 63369 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23704901 JRNL DOI 10.1371/JOURNAL.PONE.0063369 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 20090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1021 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1395 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.3850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2636 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.47000 REMARK 3 B22 (A**2) : 0.47000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : 0.23000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.207 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.360 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2682 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1809 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3623 ; 1.125 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4454 ; 0.818 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 340 ; 5.563 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;34.018 ;25.217 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 492 ;15.044 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.407 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 421 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2965 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 493 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1697 ; 0.396 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 692 ; 0.086 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2746 ; 0.775 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 985 ; 1.439 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 877 ; 2.326 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 14 A 354 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9802 25.3965 17.1806 REMARK 3 T TENSOR REMARK 3 T11: 0.0806 T22: 0.1484 REMARK 3 T33: 0.1125 T12: 0.0614 REMARK 3 T13: 0.0023 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.9193 L22: 2.1751 REMARK 3 L33: 1.9516 L12: -0.5110 REMARK 3 L13: 0.4703 L23: -0.7673 REMARK 3 S TENSOR REMARK 3 S11: -0.0523 S12: -0.2364 S13: -0.0596 REMARK 3 S21: 0.1602 S22: 0.1598 S23: 0.2685 REMARK 3 S31: 0.0323 S32: -0.3480 S33: -0.1075 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067798. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20258 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 73.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE, 0.26 M CA ACETATE, REMARK 280 9.14% PEG 8000, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.79567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.59133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.59133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.79567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 9 REMARK 465 ASN A 10 REMARK 465 ALA A 11 REMARK 465 ASN A 12 REMARK 465 ILE A 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 557 O HOH A 571 2.02 REMARK 500 O HOH A 534 O HOH A 568 2.07 REMARK 500 O HOH A 467 O HOH A 545 2.17 REMARK 500 O HOH A 565 O HOH A 578 2.17 REMARK 500 O HOH A 379 O HOH A 416 2.19 REMARK 500 O HOH A 429 O HOH A 575 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 578 O HOH A 580 6655 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 106 -72.80 -131.45 REMARK 500 ASP A 115 71.84 -157.07 REMARK 500 ASP A 119 21.35 -140.50 REMARK 500 PHE A 158 10.52 -160.31 REMARK 500 ARG A 239 21.61 -143.65 REMARK 500 SER A 273 -158.59 -106.54 REMARK 500 HIS A 274 -122.96 46.94 REMARK 500 LYS A 279 -2.08 74.09 REMARK 500 THR A 329 -116.85 -118.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1001 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 66 SG REMARK 620 2 HIS A 274 NE2 173.7 REMARK 620 3 GLU A 307 OE2 91.0 82.8 REMARK 620 4 ASP A 330 OD2 86.5 95.9 126.5 REMARK 620 5 ACT A1002 OXT 110.7 73.7 118.7 111.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 263 OD1 REMARK 620 2 ASP A 263 OD2 45.8 REMARK 620 3 HOH A 579 O 87.9 106.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1003 DBREF 3TQK A 12 354 UNP Q5NG89 Q5NG89_FRATT 12 354 SEQADV 3TQK SER A 9 UNP Q5NG89 EXPRESSION TAG SEQADV 3TQK ASN A 10 UNP Q5NG89 EXPRESSION TAG SEQADV 3TQK ALA A 11 UNP Q5NG89 EXPRESSION TAG SEQRES 1 A 346 SER ASN ALA ASN ILE ASN ILE LYS LYS GLU LYS VAL LEU SEQRES 2 A 346 ILE PRO ALA GLU VAL LEU ILE GLN ASP ILE PRO LEU LEU SEQRES 3 A 346 LYS THR SER PHE GLU THR VAL ARG LYS SER ARG LYS GLU SEQRES 4 A 346 ILE ALA ASN ILE ILE HIS GLY ASN ASP ASP ARG VAL ALA SEQRES 5 A 346 VAL VAL VAL GLY PRO CYS SER ILE HIS ASP PRO ALA ALA SEQRES 6 A 346 ALA ILE GLU TYR ALA THR LYS LEU LYS GLU GLN VAL LYS SEQRES 7 A 346 LYS PHE HIS LYS ASP ILE LEU ILE ILE MSE ARG VAL TYR SEQRES 8 A 346 PHE GLU LYS PRO ARG THR THR ILE GLY TRP LYS GLY PHE SEQRES 9 A 346 ILE ASN ASP PRO ASP LEU ASP ASN SER TYR ASN ILE ASN SEQRES 10 A 346 LYS GLY LEU ARG LEU ALA ARG ASN LEU LEU SER ASP LEU SEQRES 11 A 346 THR ASN MSE GLY LEU PRO CYS ALA THR GLU PHE LEU ASP SEQRES 12 A 346 VAL ILE THR PRO GLN TYR PHE ALA GLU LEU ILE THR TRP SEQRES 13 A 346 GLY ALA ILE GLY ALA ARG THR VAL GLU SER GLN VAL HIS SEQRES 14 A 346 ARG GLU LEU ALA SER GLY LEU SER ALA SER ILE GLY PHE SEQRES 15 A 346 LYS ASN ALA THR ASN GLY ASP VAL GLN VAL ALA VAL ASP SEQRES 16 A 346 ALA VAL LYS SER ALA THR TYR PRO HIS HIS PHE LEU SER SEQRES 17 A 346 THR THR LYS SER GLY SER THR ALA ILE PHE ALA THR LYS SEQRES 18 A 346 GLY ASN GLN ASN GLY HIS VAL ILE LEU ARG GLY GLY ALA SEQRES 19 A 346 SER GLY PRO ASN PHE SER LYS GLU HIS VAL ASP ASP CYS SEQRES 20 A 346 ILE ALA LYS LEU LYS LYS ALA ASP ILE ASN THR LYS VAL SEQRES 21 A 346 MSE ILE ASP CYS SER HIS GLY ASN SER GLN LYS ASP HIS SEQRES 22 A 346 SER LYS GLN ILE SER VAL LEU ALA ASP ILE CYS GLU GLN SEQRES 23 A 346 ILE LYS HIS SER ASN ASP ILE PHE GLY VAL MSE ILE GLU SEQRES 24 A 346 SER ASN LEU VAL ALA GLY ASN GLN ASP ILE ASN LYS LYS SEQRES 25 A 346 PRO LEU THR TYR GLY GLN SER VAL THR ASP LYS CYS VAL SEQRES 26 A 346 ASP PHE GLU GLU THR VAL LYS MSE LEU GLU MSE LEU ALA SEQRES 27 A 346 GLU ALA VAL GLN VAL ARG ARG GLY MODRES 3TQK MSE A 96 MET SELENOMETHIONINE MODRES 3TQK MSE A 141 MET SELENOMETHIONINE MODRES 3TQK MSE A 269 MET SELENOMETHIONINE MODRES 3TQK MSE A 305 MET SELENOMETHIONINE MODRES 3TQK MSE A 341 MET SELENOMETHIONINE MODRES 3TQK MSE A 344 MET SELENOMETHIONINE HET MSE A 96 8 HET MSE A 141 8 HET MSE A 269 8 HET MSE A 305 8 HET MSE A 341 8 HET MSE A 344 8 HET MN A1001 1 HET ACT A1002 4 HET CA A1003 1 HETNAM MSE SELENOMETHIONINE HETNAM MN MANGANESE (II) ION HETNAM ACT ACETATE ION HETNAM CA CALCIUM ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 MN MN 2+ FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 CA CA 2+ FORMUL 5 HOH *236(H2 O) HELIX 1 1 PRO A 23 ILE A 31 1 9 HELIX 2 2 LEU A 34 HIS A 53 1 20 HELIX 3 3 ASP A 70 HIS A 89 1 20 HELIX 4 4 ASN A 123 MSE A 141 1 19 HELIX 5 5 ILE A 153 ILE A 162 5 10 HELIX 6 6 GLY A 168 VAL A 172 5 5 HELIX 7 7 SER A 174 SER A 182 1 9 HELIX 8 8 VAL A 198 THR A 209 1 12 HELIX 9 9 SER A 248 ALA A 262 1 15 HELIX 10 10 SER A 273 GLN A 278 1 6 HELIX 11 11 ASP A 280 SER A 282 5 3 HELIX 12 12 LYS A 283 SER A 298 1 16 HELIX 13 13 ASP A 334 ARG A 353 1 20 SHEET 1 A 9 VAL A 59 GLY A 64 0 SHEET 2 A 9 ILE A 92 ARG A 97 1 O LEU A 93 N VAL A 61 SHEET 3 A 9 CYS A 145 GLU A 148 1 O ALA A 146 N MSE A 96 SHEET 4 A 9 TRP A 164 ILE A 167 1 O ALA A 166 N THR A 147 SHEET 5 A 9 SER A 187 LYS A 191 1 O SER A 187 N GLY A 165 SHEET 6 A 9 GLY A 234 LEU A 238 1 O HIS A 235 N PHE A 190 SHEET 7 A 9 VAL A 268 ASP A 271 1 O ASP A 271 N LEU A 238 SHEET 8 A 9 ILE A 301 GLU A 307 1 O PHE A 302 N VAL A 268 SHEET 9 A 9 VAL A 59 GLY A 64 1 N ALA A 60 O PHE A 302 SHEET 1 B 2 HIS A 213 THR A 217 0 SHEET 2 B 2 THR A 223 ALA A 227 -1 O PHE A 226 N PHE A 214 SHEET 1 C 2 VAL A 311 ASN A 314 0 SHEET 2 C 2 GLN A 326 SER A 327 1 N SER A 327 O GLY A 313 LINK C ILE A 95 N MSE A 96 1555 1555 1.32 LINK C MSE A 96 N ARG A 97 1555 1555 1.32 LINK C ASN A 140 N MSE A 141 1555 1555 1.33 LINK C MSE A 141 N GLY A 142 1555 1555 1.33 LINK C VAL A 268 N MSE A 269 1555 1555 1.33 LINK C MSE A 269 N ILE A 270 1555 1555 1.34 LINK C VAL A 304 N MSE A 305 1555 1555 1.33 LINK C MSE A 305 N ILE A 306 1555 1555 1.33 LINK C LYS A 340 N MSE A 341 1555 1555 1.32 LINK C MSE A 341 N LEU A 342 1555 1555 1.33 LINK C GLU A 343 N MSE A 344 1555 1555 1.33 LINK C MSE A 344 N LEU A 345 1555 1555 1.33 LINK SG CYS A 66 MN MN A1001 1555 1555 2.57 LINK OD1 ASP A 263 CA CA A1003 1555 1555 2.69 LINK OD2 ASP A 263 CA CA A1003 1555 1555 2.94 LINK NE2 HIS A 274 MN MN A1001 1555 1555 2.24 LINK OE2 GLU A 307 MN MN A1001 1555 1555 2.03 LINK OD2 ASP A 330 MN MN A1001 1555 1555 2.33 LINK O HOH A 579 CA CA A1003 1555 1555 2.19 LINK MN MN A1001 OXT ACT A1002 1555 1555 2.48 CISPEP 1 LYS A 320 PRO A 321 0 -6.39 SITE 1 AC1 5 CYS A 66 HIS A 274 GLU A 307 ASP A 330 SITE 2 AC1 5 ACT A1002 SITE 1 AC2 6 CYS A 66 ARG A 97 GLU A 101 PRO A 103 SITE 2 AC2 6 HIS A 274 MN A1001 SITE 1 AC3 3 ASP A 263 HOH A 383 HOH A 579 CRYST1 84.690 84.690 107.387 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011808 0.006817 0.000000 0.00000 SCALE2 0.000000 0.013634 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009312 0.00000