data_3TRT # _entry.id 3TRT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.294 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3TRT RCSB RCSB067842 WWPDB D_1000067842 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3KLT _pdbx_database_related.details 'Crystal structure of vimentin coil2 fragment without stabilising mutation' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3TRT _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-09-10 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chernyatina, A.A.' 1 'Strelkov, S.V.' 2 # _citation.id primary _citation.title 'Stabilization of vimentin coil2 fragment via an engineered disulfide.' _citation.journal_abbrev J.Struct.Biol. _citation.journal_volume 177 _citation.page_first 46 _citation.page_last 53 _citation.year 2012 _citation.journal_id_ASTM JSBIEM _citation.country US _citation.journal_id_ISSN 1047-8477 _citation.journal_id_CSD 0803 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22119849 _citation.pdbx_database_id_DOI 10.1016/j.jsb.2011.11.014 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chernyatina, A.A.' 1 primary 'Strelkov, S.V.' 2 # _cell.entry_id 3TRT _cell.length_a 53.419 _cell.length_b 75.521 _cell.length_c 86.859 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3TRT _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Vimentin 8818.362 2 ? 'L265C, L269(MSE), C328(MSE)' 'first half of vimentin coil2, UNP residues 261-335' ? 2 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 4 non-polymer syn 'AMMONIUM ION' 18.038 1 ? ? ? ? 5 water nat water 18.015 29 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GGSKPDCTAA(MSE)RDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLT(MSE)EV DALKG ; _entity_poly.pdbx_seq_one_letter_code_can GGSKPDCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALKG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 SER n 1 4 LYS n 1 5 PRO n 1 6 ASP n 1 7 CYS n 1 8 THR n 1 9 ALA n 1 10 ALA n 1 11 MSE n 1 12 ARG n 1 13 ASP n 1 14 VAL n 1 15 ARG n 1 16 GLN n 1 17 GLN n 1 18 TYR n 1 19 GLU n 1 20 SER n 1 21 VAL n 1 22 ALA n 1 23 ALA n 1 24 LYS n 1 25 ASN n 1 26 LEU n 1 27 GLN n 1 28 GLU n 1 29 ALA n 1 30 GLU n 1 31 GLU n 1 32 TRP n 1 33 TYR n 1 34 LYS n 1 35 SER n 1 36 LYS n 1 37 PHE n 1 38 ALA n 1 39 ASP n 1 40 LEU n 1 41 SER n 1 42 GLU n 1 43 ALA n 1 44 ALA n 1 45 ASN n 1 46 ARG n 1 47 ASN n 1 48 ASN n 1 49 ASP n 1 50 ALA n 1 51 LEU n 1 52 ARG n 1 53 GLN n 1 54 ALA n 1 55 LYS n 1 56 GLN n 1 57 GLU n 1 58 SER n 1 59 THR n 1 60 GLU n 1 61 TYR n 1 62 ARG n 1 63 ARG n 1 64 GLN n 1 65 VAL n 1 66 GLN n 1 67 SER n 1 68 LEU n 1 69 THR n 1 70 MSE n 1 71 GLU n 1 72 VAL n 1 73 ASP n 1 74 ALA n 1 75 LEU n 1 76 LYS n 1 77 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene VIM _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pPEP-TEV _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VIME_HUMAN _struct_ref.pdbx_db_accession P08670 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code SKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTCEVDALKG _struct_ref.pdbx_align_begin 261 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3TRT A 3 ? 77 ? P08670 261 ? 335 ? 261 335 2 1 3TRT B 3 ? 77 ? P08670 261 ? 335 ? 261 335 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3TRT GLY A 1 ? UNP P08670 ? ? 'EXPRESSION TAG' 259 1 1 3TRT GLY A 2 ? UNP P08670 ? ? 'EXPRESSION TAG' 260 2 1 3TRT CYS A 7 ? UNP P08670 LEU 265 'ENGINEERED MUTATION' 265 3 1 3TRT MSE A 11 ? UNP P08670 LEU 269 'ENGINEERED MUTATION' 269 4 1 3TRT MSE A 70 ? UNP P08670 CYS 328 'ENGINEERED MUTATION' 328 5 2 3TRT GLY B 1 ? UNP P08670 ? ? 'EXPRESSION TAG' 259 6 2 3TRT GLY B 2 ? UNP P08670 ? ? 'EXPRESSION TAG' 260 7 2 3TRT CYS B 7 ? UNP P08670 LEU 265 'ENGINEERED MUTATION' 265 8 2 3TRT MSE B 11 ? UNP P08670 LEU 269 'ENGINEERED MUTATION' 269 9 2 3TRT MSE B 70 ? UNP P08670 CYS 328 'ENGINEERED MUTATION' 328 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NH4 non-polymer . 'AMMONIUM ION' ? 'H4 N 1' 18.038 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 3 _exptl.entry_id 3TRT _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '2M ammonium sulphate, 0.1M Tris pH8.5 + protein in 10 mM Tris pH 8, 38 mM NaCl, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 3 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'MARMOSAIC 225 mm CCD' 2010-03-27 ? 2 CCD 'MARMOSAIC 225 mm CCD' 2010-03-27 ? 3 CCD 'MARMOSAIC 225 mm CCD' 2010-04-25 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 'SINGLE WAVELENGTH' ? 1 M x-ray 2 'SINGLE WAVELENGTH' ? 1 M x-ray 3 'SINGLE WAVELENGTH' ? 1 M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9793 1.0 2 0.9796 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'SLS BEAMLINE X06DA' 0.9793 ? SLS X06DA 2 SYNCHROTRON 'SLS BEAMLINE X06DA' 0.9796 ? SLS X06DA 3 SYNCHROTRON 'SLS BEAMLINE X06DA' 0.9793 ? SLS X06DA # _reflns.entry_id 3TRT _reflns.d_resolution_high 2.300 _reflns.d_resolution_low 28.000 _reflns.number_obs 14768 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI 10.700 _reflns.pdbx_chi_squared 1.718 _reflns.pdbx_redundancy 3.400 _reflns.percent_possible_obs 97.800 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.number_all 14768 _reflns.pdbx_Rsym_value 0.088 _reflns.B_iso_Wilson_estimate 37.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2,3 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.300 2.340 ? ? ? ? 2.0 0.352 1.070 2.500 ? 695 87.100 1 1,2,3 2.340 2.390 ? ? ? ? ? 0.370 1.138 2.700 ? 718 92.300 2 1,2,3 2.390 2.440 ? ? ? ? ? 0.341 1.201 2.900 ? 741 91.400 3 1,2,3 2.440 2.490 ? ? ? ? ? 0.297 1.088 3.000 ? 727 95.200 4 1,2,3 2.490 2.550 ? ? ? ? ? 0.266 1.180 3.100 ? 795 96.700 5 1,2,3 2.550 2.610 ? ? ? ? ? 0.248 1.240 3.200 ? 760 98.200 6 1,2,3 2.610 2.680 ? ? ? ? ? 0.228 1.241 3.300 ? 796 99.000 7 1,2,3 2.680 2.760 ? ? ? ? ? 0.210 1.147 3.500 ? 820 99.500 8 1,2,3 2.760 2.850 ? ? ? ? ? 0.193 1.285 3.600 ? 753 99.900 9 1,2,3 2.850 2.950 ? ? ? ? ? 0.157 1.361 3.700 ? 780 100.000 10 1,2,3 2.950 3.070 ? ? ? ? ? 0.121 1.377 3.700 ? 814 100.000 11 1,2,3 3.070 3.210 ? ? ? ? ? 0.107 1.524 3.700 ? 812 100.000 12 1,2,3 3.210 3.380 ? ? ? ? ? 0.088 1.809 3.700 ? 785 100.000 13 1,2,3 3.380 3.590 ? ? ? ? ? 0.075 1.986 3.700 ? 792 100.000 14 1,2,3 3.590 3.860 ? ? ? ? ? 0.065 2.287 3.600 ? 786 100.000 15 1,2,3 3.860 4.250 ? ? ? ? ? 0.058 2.742 3.600 ? 815 99.900 16 1,2,3 4.250 4.860 ? ? ? ? ? 0.059 2.950 3.600 ? 795 99.900 17 1,2,3 4.860 6.120 ? ? ? ? ? 0.051 2.278 3.700 ? 782 100.000 18 1,2,3 6.120 28.000 ? ? ? ? ? 0.044 2.529 3.600 ? 802 99.400 19 1,2,3 # _refine.entry_id 3TRT _refine.ls_d_res_high 2.30 _refine.ls_d_res_low 27.0340 _refine.pdbx_ls_sigma_F 1.060 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.3000 _refine.ls_number_reflns_obs 14755 _refine.ls_number_reflns_all 14755 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.details ? _refine.ls_R_factor_all 0.2336 _refine.ls_R_factor_obs 0.2336 _refine.ls_R_factor_R_work 0.2246 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2984 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 12.6700 _refine.ls_number_reflns_R_free 1870 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 40.8350 _refine.solvent_model_param_bsol 43.2800 _refine.solvent_model_param_ksol 0.3820 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 16.9221 _refine.aniso_B[2][2] -0.5955 _refine.aniso_B[3][3] -16.3266 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.9800 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.8300 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 179.520 _refine.B_iso_min 18.860 _refine.pdbx_overall_phase_error 31.0500 _refine.occupancy_max 1.000 _refine.occupancy_min 0.190 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1,2,3 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1192 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 39 _refine_hist.number_atoms_solvent 29 _refine_hist.number_atoms_total 1260 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 27.0340 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1236 0.008 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1654 1.034 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 171 0.063 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 218 0.003 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 477 15.718 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.30 2.3592 13 83.0000 870 . 0.2846 0.4059 . 109 . 979 . . 'X-RAY DIFFRACTION' 2.3592 2.4286 13 92.0000 921 . 0.2754 0.3825 . 172 . 1093 . . 'X-RAY DIFFRACTION' 2.4286 2.5070 13 95.0000 947 . 0.2722 0.3040 . 144 . 1091 . . 'X-RAY DIFFRACTION' 2.5070 2.5965 13 97.0000 985 . 0.2677 0.3036 . 156 . 1141 . . 'X-RAY DIFFRACTION' 2.5965 2.7004 13 99.0000 987 . 0.2671 0.2945 . 150 . 1137 . . 'X-RAY DIFFRACTION' 2.7004 2.8231 13 100.0000 1051 . 0.2605 0.3856 . 126 . 1177 . . 'X-RAY DIFFRACTION' 2.8231 2.9718 13 100.0000 1016 . 0.2407 0.3535 . 147 . 1163 . . 'X-RAY DIFFRACTION' 2.9718 3.1577 13 100.0000 1001 . 0.2557 0.2944 . 168 . 1169 . . 'X-RAY DIFFRACTION' 3.1577 3.4011 13 100.0000 1012 . 0.2280 0.3538 . 141 . 1153 . . 'X-RAY DIFFRACTION' 3.4011 3.7426 13 100.0000 1041 . 0.1954 0.2456 . 140 . 1181 . . 'X-RAY DIFFRACTION' 3.7426 4.2823 13 100.0000 1023 . 0.1502 0.2259 . 134 . 1157 . . 'X-RAY DIFFRACTION' 4.2823 5.3882 13 100.0000 1008 . 0.1891 0.2375 . 151 . 1159 . . 'X-RAY DIFFRACTION' 5.3882 27.0362 13 99.0000 1023 . 0.2551 0.3317 . 132 . 1155 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3TRT _struct.title 'Crystal structure of stabilised vimentin coil2 fragment' _struct.pdbx_descriptor Vimentin _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3TRT _struct_keywords.text 'cytoskeleton, intermediate filament, vimentin, alpha-helix, STRUCTURAL PROTEIN' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 5 ? L N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 7 ? GLY A 77 ? CYS A 265 GLY A 335 1 ? 71 HELX_P HELX_P2 2 CYS B 7 ? ARG B 46 ? CYS B 265 ARG B 304 1 ? 40 HELX_P HELX_P3 3 ASN B 47 ? LYS B 76 ? ASN B 305 LYS B 334 1 ? 30 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 7 SG ? ? ? 1_555 B CYS 7 SG ? ? A CYS 265 B CYS 265 1_555 ? ? ? ? ? ? ? 2.044 ? covale1 covale ? ? A ALA 10 C ? ? ? 1_555 A MSE 11 N ? ? A ALA 268 A MSE 269 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? A MSE 11 C ? ? ? 1_555 A ARG 12 N ? ? A MSE 269 A ARG 270 1_555 ? ? ? ? ? ? ? 1.318 ? covale3 covale ? ? A THR 69 C ? ? ? 1_555 A MSE 70 N ? ? A THR 327 A MSE 328 1_555 ? ? ? ? ? ? ? 1.307 ? covale4 covale ? ? A MSE 70 C ? ? ? 1_555 A GLU 71 N ? ? A MSE 328 A GLU 329 1_555 ? ? ? ? ? ? ? 1.316 ? covale5 covale ? ? B ALA 10 C ? ? ? 1_555 B MSE 11 N ? ? B ALA 268 B MSE 269 1_555 ? ? ? ? ? ? ? 1.342 ? covale6 covale ? ? B MSE 11 C ? ? ? 1_555 B ARG 12 N ? ? B MSE 269 B ARG 270 1_555 ? ? ? ? ? ? ? 1.316 ? covale7 covale ? ? B THR 69 C ? ? ? 1_555 B MSE 70 N ? ? B THR 327 B MSE 328 1_555 ? ? ? ? ? ? ? 1.369 ? covale8 covale ? ? B MSE 70 C ? ? ? 1_555 B GLU 71 N ? ? B MSE 328 B GLU 329 1_555 ? ? ? ? ? ? ? 1.317 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE SO4 A 2' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE SO4 A 4' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL A 7' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE NH4 A 8' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 B 1' AC6 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE SO4 B 3' AC7 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL B 5' AC8 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL B 6' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ARG A 52 ? ARG A 310 . ? 3_556 ? 2 AC1 2 GLN A 56 ? GLN A 314 . ? 3_556 ? 3 AC2 8 NH4 F . ? NH4 A 8 . ? 2_555 ? 4 AC2 8 NH4 F . ? NH4 A 8 . ? 4_557 ? 5 AC2 8 NH4 F . ? NH4 A 8 . ? 1_555 ? 6 AC2 8 NH4 F . ? NH4 A 8 . ? 3_557 ? 7 AC2 8 GLN A 16 ? GLN A 274 . ? 3_557 ? 8 AC2 8 GLN A 16 ? GLN A 274 . ? 4_557 ? 9 AC2 8 GLN A 16 ? GLN A 274 . ? 1_555 ? 10 AC2 8 GLN A 16 ? GLN A 274 . ? 2_555 ? 11 AC3 6 ALA A 22 ? ALA A 280 . ? 4_557 ? 12 AC3 6 ASN A 25 ? ASN A 283 . ? 4_557 ? 13 AC3 6 HOH L . ? HOH B 33 . ? 4_557 ? 14 AC3 6 ALA B 22 ? ALA B 280 . ? 4_557 ? 15 AC3 6 ALA B 23 ? ALA B 281 . ? 4_557 ? 16 AC3 6 LEU B 26 ? LEU B 284 . ? 4_557 ? 17 AC4 4 SO4 D . ? SO4 A 4 . ? 3_557 ? 18 AC4 4 SO4 D . ? SO4 A 4 . ? 4_557 ? 19 AC4 4 SO4 D . ? SO4 A 4 . ? 1_555 ? 20 AC4 4 SO4 D . ? SO4 A 4 . ? 2_555 ? 21 AC5 4 HOH L . ? HOH B 10 . ? 1_555 ? 22 AC5 4 HOH L . ? HOH B 25 . ? 1_555 ? 23 AC5 4 THR B 59 ? THR B 317 . ? 1_555 ? 24 AC5 4 ARG B 62 ? ARG B 320 . ? 1_555 ? 25 AC6 2 ARG A 52 ? ARG A 310 . ? 3_556 ? 26 AC6 2 LYS B 36 ? LYS B 294 . ? 1_555 ? 27 AC7 6 SER A 3 ? SER A 261 . ? 1_555 ? 28 AC7 6 LYS A 4 ? LYS A 262 . ? 1_555 ? 29 AC7 6 THR A 59 ? THR A 317 . ? 1_556 ? 30 AC7 6 ARG A 62 ? ARG A 320 . ? 1_556 ? 31 AC7 6 ARG A 63 ? ARG A 321 . ? 1_556 ? 32 AC7 6 LYS B 4 ? LYS B 262 . ? 1_555 ? 33 AC8 3 LYS A 55 ? LYS A 313 . ? 1_556 ? 34 AC8 3 LYS B 4 ? LYS B 262 . ? 1_555 ? 35 AC8 3 TRP B 32 ? TRP B 290 . ? 4_557 ? # _atom_sites.entry_id 3TRT _atom_sites.fract_transf_matrix[1][1] 0.018720 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013241 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011513 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 259 ? ? ? A . n A 1 2 GLY 2 260 ? ? ? A . n A 1 3 SER 3 261 261 SER SER A . n A 1 4 LYS 4 262 262 LYS LYS A . n A 1 5 PRO 5 263 263 PRO PRO A . n A 1 6 ASP 6 264 264 ASP ASP A . n A 1 7 CYS 7 265 265 CYS CYS A . n A 1 8 THR 8 266 266 THR THR A . n A 1 9 ALA 9 267 267 ALA ALA A . n A 1 10 ALA 10 268 268 ALA ALA A . n A 1 11 MSE 11 269 269 MSE MSE A . n A 1 12 ARG 12 270 270 ARG ARG A . n A 1 13 ASP 13 271 271 ASP ASP A . n A 1 14 VAL 14 272 272 VAL VAL A . n A 1 15 ARG 15 273 273 ARG ARG A . n A 1 16 GLN 16 274 274 GLN GLN A . n A 1 17 GLN 17 275 275 GLN GLN A . n A 1 18 TYR 18 276 276 TYR TYR A . n A 1 19 GLU 19 277 277 GLU GLU A . n A 1 20 SER 20 278 278 SER SER A . n A 1 21 VAL 21 279 279 VAL VAL A . n A 1 22 ALA 22 280 280 ALA ALA A . n A 1 23 ALA 23 281 281 ALA ALA A . n A 1 24 LYS 24 282 282 LYS LYS A . n A 1 25 ASN 25 283 283 ASN ASN A . n A 1 26 LEU 26 284 284 LEU LEU A . n A 1 27 GLN 27 285 285 GLN GLN A . n A 1 28 GLU 28 286 286 GLU GLU A . n A 1 29 ALA 29 287 287 ALA ALA A . n A 1 30 GLU 30 288 288 GLU GLU A . n A 1 31 GLU 31 289 289 GLU GLU A . n A 1 32 TRP 32 290 290 TRP TRP A . n A 1 33 TYR 33 291 291 TYR TYR A . n A 1 34 LYS 34 292 292 LYS LYS A . n A 1 35 SER 35 293 293 SER SER A . n A 1 36 LYS 36 294 294 LYS LYS A . n A 1 37 PHE 37 295 295 PHE PHE A . n A 1 38 ALA 38 296 296 ALA ALA A . n A 1 39 ASP 39 297 297 ASP ASP A . n A 1 40 LEU 40 298 298 LEU LEU A . n A 1 41 SER 41 299 299 SER SER A . n A 1 42 GLU 42 300 300 GLU GLU A . n A 1 43 ALA 43 301 301 ALA ALA A . n A 1 44 ALA 44 302 302 ALA ALA A . n A 1 45 ASN 45 303 303 ASN ASN A . n A 1 46 ARG 46 304 304 ARG ARG A . n A 1 47 ASN 47 305 305 ASN ASN A . n A 1 48 ASN 48 306 306 ASN ASN A . n A 1 49 ASP 49 307 307 ASP ASP A . n A 1 50 ALA 50 308 308 ALA ALA A . n A 1 51 LEU 51 309 309 LEU LEU A . n A 1 52 ARG 52 310 310 ARG ARG A . n A 1 53 GLN 53 311 311 GLN GLN A . n A 1 54 ALA 54 312 312 ALA ALA A . n A 1 55 LYS 55 313 313 LYS LYS A . n A 1 56 GLN 56 314 314 GLN GLN A . n A 1 57 GLU 57 315 315 GLU GLU A . n A 1 58 SER 58 316 316 SER SER A . n A 1 59 THR 59 317 317 THR THR A . n A 1 60 GLU 60 318 318 GLU GLU A . n A 1 61 TYR 61 319 319 TYR TYR A . n A 1 62 ARG 62 320 320 ARG ARG A . n A 1 63 ARG 63 321 321 ARG ARG A . n A 1 64 GLN 64 322 322 GLN GLN A . n A 1 65 VAL 65 323 323 VAL VAL A . n A 1 66 GLN 66 324 324 GLN GLN A . n A 1 67 SER 67 325 325 SER SER A . n A 1 68 LEU 68 326 326 LEU LEU A . n A 1 69 THR 69 327 327 THR THR A . n A 1 70 MSE 70 328 328 MSE MSE A . n A 1 71 GLU 71 329 329 GLU GLU A . n A 1 72 VAL 72 330 330 VAL VAL A . n A 1 73 ASP 73 331 331 ASP ASP A . n A 1 74 ALA 74 332 332 ALA ALA A . n A 1 75 LEU 75 333 333 LEU LEU A . n A 1 76 LYS 76 334 334 LYS LYS A . n A 1 77 GLY 77 335 335 GLY GLY A . n B 1 1 GLY 1 259 ? ? ? B . n B 1 2 GLY 2 260 ? ? ? B . n B 1 3 SER 3 261 ? ? ? B . n B 1 4 LYS 4 262 262 LYS LYS B . n B 1 5 PRO 5 263 263 PRO PRO B . n B 1 6 ASP 6 264 264 ASP ASP B . n B 1 7 CYS 7 265 265 CYS CYS B . n B 1 8 THR 8 266 266 THR THR B . n B 1 9 ALA 9 267 267 ALA ALA B . n B 1 10 ALA 10 268 268 ALA ALA B . n B 1 11 MSE 11 269 269 MSE MSE B . n B 1 12 ARG 12 270 270 ARG ARG B . n B 1 13 ASP 13 271 271 ASP ASP B . n B 1 14 VAL 14 272 272 VAL VAL B . n B 1 15 ARG 15 273 273 ARG ARG B . n B 1 16 GLN 16 274 274 GLN GLN B . n B 1 17 GLN 17 275 275 GLN GLN B . n B 1 18 TYR 18 276 276 TYR TYR B . n B 1 19 GLU 19 277 277 GLU GLU B . n B 1 20 SER 20 278 278 SER SER B . n B 1 21 VAL 21 279 279 VAL VAL B . n B 1 22 ALA 22 280 280 ALA ALA B . n B 1 23 ALA 23 281 281 ALA ALA B . n B 1 24 LYS 24 282 282 LYS LYS B . n B 1 25 ASN 25 283 283 ASN ASN B . n B 1 26 LEU 26 284 284 LEU LEU B . n B 1 27 GLN 27 285 285 GLN GLN B . n B 1 28 GLU 28 286 286 GLU GLU B . n B 1 29 ALA 29 287 287 ALA ALA B . n B 1 30 GLU 30 288 288 GLU GLU B . n B 1 31 GLU 31 289 289 GLU GLU B . n B 1 32 TRP 32 290 290 TRP TRP B . n B 1 33 TYR 33 291 291 TYR TYR B . n B 1 34 LYS 34 292 292 LYS LYS B . n B 1 35 SER 35 293 293 SER SER B . n B 1 36 LYS 36 294 294 LYS LYS B . n B 1 37 PHE 37 295 295 PHE PHE B . n B 1 38 ALA 38 296 296 ALA ALA B . n B 1 39 ASP 39 297 297 ASP ASP B . n B 1 40 LEU 40 298 298 LEU LEU B . n B 1 41 SER 41 299 299 SER SER B . n B 1 42 GLU 42 300 300 GLU GLU B . n B 1 43 ALA 43 301 301 ALA ALA B . n B 1 44 ALA 44 302 302 ALA ALA B . n B 1 45 ASN 45 303 303 ASN ASN B . n B 1 46 ARG 46 304 304 ARG ARG B . n B 1 47 ASN 47 305 305 ASN ASN B . n B 1 48 ASN 48 306 306 ASN ASN B . n B 1 49 ASP 49 307 307 ASP ASP B . n B 1 50 ALA 50 308 308 ALA ALA B . n B 1 51 LEU 51 309 309 LEU LEU B . n B 1 52 ARG 52 310 310 ARG ARG B . n B 1 53 GLN 53 311 311 GLN GLN B . n B 1 54 ALA 54 312 312 ALA ALA B . n B 1 55 LYS 55 313 313 LYS LYS B . n B 1 56 GLN 56 314 314 GLN GLN B . n B 1 57 GLU 57 315 315 GLU GLU B . n B 1 58 SER 58 316 316 SER SER B . n B 1 59 THR 59 317 317 THR THR B . n B 1 60 GLU 60 318 318 GLU GLU B . n B 1 61 TYR 61 319 319 TYR TYR B . n B 1 62 ARG 62 320 320 ARG ARG B . n B 1 63 ARG 63 321 321 ARG ARG B . n B 1 64 GLN 64 322 322 GLN GLN B . n B 1 65 VAL 65 323 323 VAL VAL B . n B 1 66 GLN 66 324 324 GLN GLN B . n B 1 67 SER 67 325 325 SER SER B . n B 1 68 LEU 68 326 326 LEU LEU B . n B 1 69 THR 69 327 327 THR THR B . n B 1 70 MSE 70 328 328 MSE MSE B . n B 1 71 GLU 71 329 329 GLU GLU B . n B 1 72 VAL 72 330 330 VAL VAL B . n B 1 73 ASP 73 331 331 ASP ASP B . n B 1 74 ALA 74 332 332 ALA ALA B . n B 1 75 LEU 75 333 333 LEU LEU B . n B 1 76 LYS 76 334 334 LYS LYS B . n B 1 77 GLY 77 335 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 2 2 SO4 SO4 A . D 2 SO4 1 4 4 SO4 SO4 A . E 3 GOL 1 7 7 GOL GOL A . F 4 NH4 1 8 8 NH4 NH4 A . G 2 SO4 1 1 1 SO4 SO4 B . H 2 SO4 1 3 3 SO4 SO4 B . I 3 GOL 1 5 5 GOL GOL B . J 3 GOL 1 6 6 GOL GOL B . K 5 HOH 1 14 14 HOH HOH A . K 5 HOH 2 16 16 HOH HOH A . K 5 HOH 3 17 17 HOH HOH A . K 5 HOH 4 19 19 HOH HOH A . K 5 HOH 5 20 20 HOH HOH A . K 5 HOH 6 24 24 HOH HOH A . K 5 HOH 7 26 26 HOH HOH A . K 5 HOH 8 27 27 HOH HOH A . K 5 HOH 9 32 32 HOH HOH A . K 5 HOH 10 34 34 HOH HOH A . K 5 HOH 11 36 36 HOH HOH A . K 5 HOH 12 38 38 HOH HOH A . L 5 HOH 1 9 9 HOH HOH B . L 5 HOH 2 10 10 HOH HOH B . L 5 HOH 3 11 11 HOH HOH B . L 5 HOH 4 12 12 HOH HOH B . L 5 HOH 5 13 13 HOH HOH B . L 5 HOH 6 15 15 HOH HOH B . L 5 HOH 7 18 18 HOH HOH B . L 5 HOH 8 21 21 HOH HOH B . L 5 HOH 9 22 22 HOH HOH B . L 5 HOH 10 23 23 HOH HOH B . L 5 HOH 11 25 25 HOH HOH B . L 5 HOH 12 28 28 HOH HOH B . L 5 HOH 13 30 30 HOH HOH B . L 5 HOH 14 31 31 HOH HOH B . L 5 HOH 15 33 33 HOH HOH B . L 5 HOH 16 35 35 HOH HOH B . L 5 HOH 17 37 37 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 11 A MSE 269 ? MET SELENOMETHIONINE 2 A MSE 70 A MSE 328 ? MET SELENOMETHIONINE 3 B MSE 11 B MSE 269 ? MET SELENOMETHIONINE 4 B MSE 70 B MSE 328 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4640 ? 1 MORE -76 ? 1 'SSA (A^2)' 11460 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A SO4 4 ? D SO4 . 2 1 A NH4 8 ? F NH4 . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-02-01 2 'Structure model' 1 1 2017-11-08 3 'Structure model' 1 2 2018-06-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.classification' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 3.000 _diffrn_reflns.pdbx_d_res_low 28.000 _diffrn_reflns.pdbx_number_obs 6742 _diffrn_reflns.pdbx_Rmerge_I_obs 0.099 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.78 _diffrn_reflns.av_sigmaI_over_netI 18.92 _diffrn_reflns.pdbx_redundancy 5.30 _diffrn_reflns.pdbx_percent_possible_obs 99.40 _diffrn_reflns.number 35451 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 8.08 28.00 ? ? 0.031 ? 1.583 5.30 100.00 1 6.44 8.08 ? ? 0.053 ? 1.426 5.40 100.00 1 5.63 6.44 ? ? 0.083 ? 1.449 5.50 100.00 1 5.12 5.63 ? ? 0.085 ? 1.345 5.50 100.00 1 4.76 5.12 ? ? 0.067 ? 1.724 5.50 100.00 1 4.48 4.76 ? ? 0.070 ? 1.765 5.40 100.00 1 4.25 4.48 ? ? 0.082 ? 1.880 5.40 100.00 1 4.07 4.25 ? ? 0.076 ? 1.956 5.50 100.00 1 3.91 4.07 ? ? 0.092 ? 2.110 5.10 100.00 1 3.78 3.91 ? ? 0.117 ? 2.555 5.10 99.70 1 3.66 3.78 ? ? 0.122 ? 3.068 4.80 99.40 1 3.56 3.66 ? ? 0.199 ? 1.982 5.10 99.40 1 3.46 3.56 ? ? 0.152 ? 2.383 5.40 100.00 1 3.38 3.46 ? ? 0.189 ? 2.452 5.10 99.70 1 3.30 3.38 ? ? 0.165 ? 1.499 5.50 100.00 1 3.23 3.30 ? ? 0.176 ? 1.421 5.40 100.00 1 3.17 3.23 ? ? 0.205 ? 1.388 5.30 100.00 1 3.11 3.17 ? ? 0.220 ? 1.323 5.10 98.90 1 3.05 3.11 ? ? 0.192 ? 1.204 5.00 96.40 1 3.00 3.05 ? ? 0.180 ? 1.173 4.90 94.30 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 6.4686 4.3409 93.3498 0.4828 0.3600 0.3840 -0.0806 -0.0168 0.0083 1.1969 0.8933 6.0828 -0.5259 -1.9699 0.1492 -0.1072 0.2765 0.0232 0.0446 -0.2382 -0.1282 -0.1664 0.7649 0.0408 'X-RAY DIFFRACTION' 2 ? refined 6.1567 10.5237 63.2438 0.2842 0.2906 0.2996 0.0661 -0.0067 -0.0092 1.9195 0.9127 1.8201 1.3807 0.5361 0.3644 0.0663 -0.0107 -0.0349 0.1400 0.0238 0.3209 0.0479 0.1558 -0.5418 'X-RAY DIFFRACTION' 3 ? refined 4.5677 12.5322 29.2723 0.3570 0.4269 0.3378 0.0088 0.0305 -0.0003 0.3608 0.2895 0.5208 0.5436 0.3830 -0.0487 0.0215 0.0921 0.0440 -0.2878 0.3277 0.0578 0.0333 0.1053 -0.1727 'X-RAY DIFFRACTION' 4 ? refined 7.3544 16.7449 4.3998 0.3065 0.2916 0.3331 -0.0242 -0.0578 -0.0381 7.7796 1.3779 4.6487 -0.3707 -5.0746 0.4128 -0.6896 -0.1541 -2.6928 0.4337 -0.4447 0.2410 -0.4742 0.6025 0.2146 'X-RAY DIFFRACTION' 5 ? refined 12.7075 8.4880 100.0950 0.5641 0.3359 0.3609 0.0482 0.0376 -0.0043 5.0613 3.1260 7.2176 3.3865 -3.4874 -1.3396 -0.6308 -0.0122 -0.7992 0.6116 -0.1212 0.3660 0.2690 -0.9531 -1.6340 'X-RAY DIFFRACTION' 6 ? refined 15.3934 4.7540 78.9062 0.4235 0.3580 0.3548 -0.0588 -0.0297 0.0215 0.0737 0.8529 0.4652 -0.4966 -0.1810 0.8260 0.0276 -0.0034 -0.0013 -0.0445 0.0272 -0.2995 0.1270 -0.1600 0.4672 'X-RAY DIFFRACTION' 7 ? refined 13.0574 10.1972 40.9723 0.4040 0.3466 0.3553 -0.0473 -0.0309 0.0305 -0.3749 0.1605 0.8591 -0.8501 0.4939 -1.1891 -0.0238 -0.1115 -0.0000 0.1019 0.0357 -0.0615 -0.1600 0.3679 0.2604 'X-RAY DIFFRACTION' 8 ? refined 8.2733 24.8448 11.0696 0.3401 0.3386 0.3794 -0.0401 0.0094 -0.0050 5.6429 0.4553 8.4232 1.1427 5.7010 1.2198 -0.5354 0.0576 -1.0072 0.1594 0.2415 0.3733 -0.0450 -1.5632 0.5100 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 261 A 278 '(chain A and resid 261:278)' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 279 A 300 '(chain A and resid 279:300)' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 301 A 323 '(chain A and resid 301:323)' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 324 A 335 '(chain A and resid 324:335)' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 262 B 269 '(chain B and resid 262:269)' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 270 B 289 '(chain B and resid 270:289)' ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 290 B 320 '(chain B and resid 290:320)' ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 B 321 B 334 '(chain B and resid 321:334)' ? ? ? ? ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de 'model building' http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 5 PHENIX dev_780 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 6 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 7 go.com . ? ? ? ? 'data collection' ? ? ? 8 SHELXCD . ? ? ? ? phasing ? ? ? 9 SHELXE . ? ? ? ? 'model building' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 264 ? ? -166.68 115.98 2 1 CYS B 265 ? ? 81.99 1.00 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 259 ? A GLY 1 2 1 Y 1 A GLY 260 ? A GLY 2 3 1 Y 1 B GLY 259 ? B GLY 1 4 1 Y 1 B GLY 260 ? B GLY 2 5 1 Y 1 B SER 261 ? B SER 3 6 1 Y 1 B GLY 335 ? B GLY 77 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 GLYCEROL GOL 4 'AMMONIUM ION' NH4 5 water HOH #