HEADER STRUCTURAL PROTEIN 10-SEP-11 3TRT TITLE CRYSTAL STRUCTURE OF STABILISED VIMENTIN COIL2 FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIMENTIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FIRST HALF OF VIMENTIN COIL2, UNP RESIDUES 261-335; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VIM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPEP-TEV KEYWDS CYTOSKELETON, INTERMEDIATE FILAMENT, VIMENTIN, ALPHA-HELIX, KEYWDS 2 STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.A.CHERNYATINA,S.V.STRELKOV REVDAT 3 06-JUN-18 3TRT 1 REMARK REVDAT 2 08-NOV-17 3TRT 1 REMARK REVDAT 1 01-FEB-12 3TRT 0 JRNL AUTH A.A.CHERNYATINA,S.V.STRELKOV JRNL TITL STABILIZATION OF VIMENTIN COIL2 FRAGMENT VIA AN ENGINEERED JRNL TITL 2 DISULFIDE. JRNL REF J.STRUCT.BIOL. V. 177 46 2012 JRNL REFN ISSN 1047-8477 JRNL PMID 22119849 JRNL DOI 10.1016/J.JSB.2011.11.014 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_780 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 14755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 12.670 REMARK 3 FREE R VALUE TEST SET COUNT : 1870 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.0362 - 5.3882 0.99 1023 132 0.2551 0.3317 REMARK 3 2 5.3882 - 4.2823 1.00 1008 151 0.1891 0.2375 REMARK 3 3 4.2823 - 3.7426 1.00 1023 134 0.1502 0.2259 REMARK 3 4 3.7426 - 3.4011 1.00 1041 140 0.1954 0.2456 REMARK 3 5 3.4011 - 3.1577 1.00 1012 141 0.2280 0.3538 REMARK 3 6 3.1577 - 2.9718 1.00 1001 168 0.2557 0.2944 REMARK 3 7 2.9718 - 2.8231 1.00 1016 147 0.2407 0.3535 REMARK 3 8 2.8231 - 2.7004 1.00 1051 126 0.2605 0.3856 REMARK 3 9 2.7004 - 2.5965 0.99 987 150 0.2671 0.2945 REMARK 3 10 2.5965 - 2.5070 0.97 985 156 0.2677 0.3036 REMARK 3 11 2.5070 - 2.4286 0.95 947 144 0.2722 0.3040 REMARK 3 12 2.4286 - 2.3592 0.92 921 172 0.2754 0.3825 REMARK 3 13 2.3592 - 2.3000 0.83 870 109 0.2846 0.4059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 43.28 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.980 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.92210 REMARK 3 B22 (A**2) : -0.59550 REMARK 3 B33 (A**2) : -16.32660 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1236 REMARK 3 ANGLE : 1.034 1654 REMARK 3 CHIRALITY : 0.063 171 REMARK 3 PLANARITY : 0.003 218 REMARK 3 DIHEDRAL : 15.718 477 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 261:278) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4686 4.3409 93.3498 REMARK 3 T TENSOR REMARK 3 T11: 0.4828 T22: 0.3600 REMARK 3 T33: 0.3840 T12: -0.0806 REMARK 3 T13: -0.0168 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.1969 L22: 0.8933 REMARK 3 L33: 6.0828 L12: -0.5259 REMARK 3 L13: -1.9699 L23: 0.1492 REMARK 3 S TENSOR REMARK 3 S11: -0.1072 S12: 0.0446 S13: -0.2382 REMARK 3 S21: -0.1664 S22: 0.2765 S23: -0.1282 REMARK 3 S31: 0.7649 S32: 0.0408 S33: 0.0232 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 279:300) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1567 10.5237 63.2438 REMARK 3 T TENSOR REMARK 3 T11: 0.2842 T22: 0.2906 REMARK 3 T33: 0.2996 T12: 0.0661 REMARK 3 T13: -0.0067 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.9195 L22: 0.9127 REMARK 3 L33: 1.8201 L12: 1.3807 REMARK 3 L13: 0.5361 L23: 0.3644 REMARK 3 S TENSOR REMARK 3 S11: 0.0663 S12: 0.1400 S13: 0.0238 REMARK 3 S21: 0.0479 S22: -0.0107 S23: 0.3209 REMARK 3 S31: 0.1558 S32: -0.5418 S33: -0.0349 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 301:323) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5677 12.5322 29.2723 REMARK 3 T TENSOR REMARK 3 T11: 0.3570 T22: 0.4269 REMARK 3 T33: 0.3378 T12: 0.0088 REMARK 3 T13: 0.0305 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.3608 L22: 0.2895 REMARK 3 L33: 0.5208 L12: 0.5436 REMARK 3 L13: 0.3830 L23: -0.0487 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: -0.2878 S13: 0.3277 REMARK 3 S21: 0.0333 S22: 0.0921 S23: 0.0578 REMARK 3 S31: 0.1053 S32: -0.1727 S33: 0.0440 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 324:335) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3544 16.7449 4.3998 REMARK 3 T TENSOR REMARK 3 T11: 0.3065 T22: 0.2916 REMARK 3 T33: 0.3331 T12: -0.0242 REMARK 3 T13: -0.0578 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 7.7796 L22: 1.3779 REMARK 3 L33: 4.6487 L12: -0.3707 REMARK 3 L13: -5.0746 L23: 0.4128 REMARK 3 S TENSOR REMARK 3 S11: -0.6896 S12: 0.4337 S13: -0.4447 REMARK 3 S21: -0.4742 S22: -0.1541 S23: 0.2410 REMARK 3 S31: 0.6025 S32: 0.2146 S33: -2.6928 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 262:269) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7075 8.4880 100.0950 REMARK 3 T TENSOR REMARK 3 T11: 0.5641 T22: 0.3359 REMARK 3 T33: 0.3609 T12: 0.0482 REMARK 3 T13: 0.0376 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 5.0613 L22: 3.1260 REMARK 3 L33: 7.2176 L12: 3.3865 REMARK 3 L13: -3.4874 L23: -1.3396 REMARK 3 S TENSOR REMARK 3 S11: -0.6308 S12: 0.6116 S13: -0.1212 REMARK 3 S21: 0.2690 S22: -0.0122 S23: 0.3660 REMARK 3 S31: -0.9531 S32: -1.6340 S33: -0.7992 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 270:289) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3934 4.7540 78.9062 REMARK 3 T TENSOR REMARK 3 T11: 0.4235 T22: 0.3580 REMARK 3 T33: 0.3548 T12: -0.0588 REMARK 3 T13: -0.0297 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 0.0737 L22: 0.8529 REMARK 3 L33: 0.4652 L12: -0.4966 REMARK 3 L13: -0.1810 L23: 0.8260 REMARK 3 S TENSOR REMARK 3 S11: 0.0276 S12: -0.0445 S13: 0.0272 REMARK 3 S21: 0.1270 S22: -0.0034 S23: -0.2995 REMARK 3 S31: -0.1600 S32: 0.4672 S33: -0.0013 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 290:320) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0574 10.1972 40.9723 REMARK 3 T TENSOR REMARK 3 T11: 0.4040 T22: 0.3466 REMARK 3 T33: 0.3553 T12: -0.0473 REMARK 3 T13: -0.0309 T23: 0.0305 REMARK 3 L TENSOR REMARK 3 L11: -0.3749 L22: 0.1605 REMARK 3 L33: 0.8591 L12: -0.8501 REMARK 3 L13: 0.4939 L23: -1.1891 REMARK 3 S TENSOR REMARK 3 S11: -0.0238 S12: 0.1019 S13: 0.0357 REMARK 3 S21: -0.1600 S22: -0.1115 S23: -0.0615 REMARK 3 S31: 0.3679 S32: 0.2604 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 321:334) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2733 24.8448 11.0696 REMARK 3 T TENSOR REMARK 3 T11: 0.3401 T22: 0.3386 REMARK 3 T33: 0.3794 T12: -0.0401 REMARK 3 T13: 0.0094 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 5.6429 L22: 0.4553 REMARK 3 L33: 8.4232 L12: 1.1427 REMARK 3 L13: 5.7010 L23: 1.2198 REMARK 3 S TENSOR REMARK 3 S11: -0.5354 S12: 0.1594 S13: 0.2415 REMARK 3 S21: -0.0450 S22: 0.0576 S23: 0.3733 REMARK 3 S31: -1.5632 S32: 0.5100 S33: -1.0072 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TRT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067842. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-10; 27-MAR-10; 25-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y REMARK 200 RADIATION SOURCE : SLS; SLS; SLS REMARK 200 BEAMLINE : X06DA; X06DA; X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793; 0.9796; 0.9793 REMARK 200 MONOCHROMATOR : NULL; NULL; NULL REMARK 200 OPTICS : NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; MARMOSAIC REMARK 200 225 MM CCD; MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14768 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35200 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH; SINGLE REMARK 200 WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULPHATE, 0.1M TRIS PH8.5 REMARK 280 + PROTEIN IN 10 MM TRIS PH 8, 38 MM NACL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.70950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.76050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.42950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.70950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.76050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.42950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.70950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.76050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.42950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.70950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.76050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.42950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 4 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 A 8 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 259 REMARK 465 GLY A 260 REMARK 465 GLY B 259 REMARK 465 GLY B 260 REMARK 465 SER B 261 REMARK 465 GLY B 335 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 264 115.98 -166.68 REMARK 500 CYS B 265 1.00 81.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KLT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VIMENTIN COIL2 FRAGMENT WITHOUT STABILISING REMARK 900 MUTATION DBREF 3TRT A 261 335 UNP P08670 VIME_HUMAN 261 335 DBREF 3TRT B 261 335 UNP P08670 VIME_HUMAN 261 335 SEQADV 3TRT GLY A 259 UNP P08670 EXPRESSION TAG SEQADV 3TRT GLY A 260 UNP P08670 EXPRESSION TAG SEQADV 3TRT CYS A 265 UNP P08670 LEU 265 ENGINEERED MUTATION SEQADV 3TRT MSE A 269 UNP P08670 LEU 269 ENGINEERED MUTATION SEQADV 3TRT MSE A 328 UNP P08670 CYS 328 ENGINEERED MUTATION SEQADV 3TRT GLY B 259 UNP P08670 EXPRESSION TAG SEQADV 3TRT GLY B 260 UNP P08670 EXPRESSION TAG SEQADV 3TRT CYS B 265 UNP P08670 LEU 265 ENGINEERED MUTATION SEQADV 3TRT MSE B 269 UNP P08670 LEU 269 ENGINEERED MUTATION SEQADV 3TRT MSE B 328 UNP P08670 CYS 328 ENGINEERED MUTATION SEQRES 1 A 77 GLY GLY SER LYS PRO ASP CYS THR ALA ALA MSE ARG ASP SEQRES 2 A 77 VAL ARG GLN GLN TYR GLU SER VAL ALA ALA LYS ASN LEU SEQRES 3 A 77 GLN GLU ALA GLU GLU TRP TYR LYS SER LYS PHE ALA ASP SEQRES 4 A 77 LEU SER GLU ALA ALA ASN ARG ASN ASN ASP ALA LEU ARG SEQRES 5 A 77 GLN ALA LYS GLN GLU SER THR GLU TYR ARG ARG GLN VAL SEQRES 6 A 77 GLN SER LEU THR MSE GLU VAL ASP ALA LEU LYS GLY SEQRES 1 B 77 GLY GLY SER LYS PRO ASP CYS THR ALA ALA MSE ARG ASP SEQRES 2 B 77 VAL ARG GLN GLN TYR GLU SER VAL ALA ALA LYS ASN LEU SEQRES 3 B 77 GLN GLU ALA GLU GLU TRP TYR LYS SER LYS PHE ALA ASP SEQRES 4 B 77 LEU SER GLU ALA ALA ASN ARG ASN ASN ASP ALA LEU ARG SEQRES 5 B 77 GLN ALA LYS GLN GLU SER THR GLU TYR ARG ARG GLN VAL SEQRES 6 B 77 GLN SER LEU THR MSE GLU VAL ASP ALA LEU LYS GLY MODRES 3TRT MSE A 269 MET SELENOMETHIONINE MODRES 3TRT MSE A 328 MET SELENOMETHIONINE MODRES 3TRT MSE B 269 MET SELENOMETHIONINE MODRES 3TRT MSE B 328 MET SELENOMETHIONINE HET MSE A 269 8 HET MSE A 328 8 HET MSE B 269 8 HET MSE B 328 8 HET SO4 A 2 5 HET SO4 A 4 5 HET GOL A 7 6 HET NH4 A 8 1 HET SO4 B 1 5 HET SO4 B 3 5 HET GOL B 5 6 HET GOL B 6 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM NH4 AMMONIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 6 NH4 H4 N 1+ FORMUL 11 HOH *29(H2 O) HELIX 1 1 CYS A 265 GLY A 335 1 71 HELIX 2 2 CYS B 265 ARG B 304 1 40 HELIX 3 3 ASN B 305 LYS B 334 1 30 SSBOND 1 CYS A 265 CYS B 265 1555 1555 2.04 LINK C ALA A 268 N MSE A 269 1555 1555 1.33 LINK C MSE A 269 N ARG A 270 1555 1555 1.32 LINK C THR A 327 N MSE A 328 1555 1555 1.31 LINK C MSE A 328 N GLU A 329 1555 1555 1.32 LINK C ALA B 268 N MSE B 269 1555 1555 1.34 LINK C MSE B 269 N ARG B 270 1555 1555 1.32 LINK C THR B 327 N MSE B 328 1555 1555 1.37 LINK C MSE B 328 N GLU B 329 1555 1555 1.32 SITE 1 AC1 2 ARG A 310 GLN A 314 SITE 1 AC2 2 NH4 A 8 GLN A 274 SITE 1 AC3 6 ALA A 280 ASN A 283 HOH B 33 ALA B 280 SITE 2 AC3 6 ALA B 281 LEU B 284 SITE 1 AC4 1 SO4 A 4 SITE 1 AC5 4 HOH B 10 HOH B 25 THR B 317 ARG B 320 SITE 1 AC6 2 ARG A 310 LYS B 294 SITE 1 AC7 6 SER A 261 LYS A 262 THR A 317 ARG A 320 SITE 2 AC7 6 ARG A 321 LYS B 262 SITE 1 AC8 3 LYS A 313 LYS B 262 TRP B 290 CRYST1 53.419 75.521 86.859 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018720 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013241 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011513 0.00000