data_3TRY # _entry.id 3TRY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3TRY pdb_00003try 10.2210/pdb3try/pdb RCSB RCSB067846 ? ? WWPDB D_1000067846 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-01-25 2 'Structure model' 1 1 2012-02-08 3 'Structure model' 1 2 2012-02-22 4 'Structure model' 1 3 2023-09-13 5 'Structure model' 1 4 2023-12-06 6 'Structure model' 1 5 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Data collection' 8 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site 8 5 'Structure model' chem_comp_atom 9 5 'Structure model' chem_comp_bond 10 6 'Structure model' pdbx_entry_details # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 8 5 'Structure model' '_chem_comp_atom.atom_id' 9 5 'Structure model' '_chem_comp_bond.atom_id_2' # _pdbx_database_status.entry_id 3TRY _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-09-11 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3TJW . unspecified PDB 3TRV . unspecified PDB 3TRW . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mortenson, D.E.' 1 'Satyshur, K.A.' 2 'Gellman, S.H.' 3 'Forest, K.T.' 4 # _citation.id primary _citation.title 'Quasiracemic crystallization as a tool to assess the accommodation of noncanonical residues in nativelike protein conformations.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 134 _citation.page_first 2473 _citation.page_last 2476 _citation.year 2012 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22280019 _citation.pdbx_database_id_DOI 10.1021/ja210045s # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mortenson, D.E.' 1 ? primary 'Satyshur, K.A.' 2 ? primary 'Guzei, I.A.' 3 ? primary 'Forest, K.T.' 4 ? primary 'Gellman, S.H.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn D-Villin-1 4083.716 1 ? N818H 'headpiece subdomain (UNP residues 792-826)' ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(DLE)(DSN)(DAS)(DGL)(DAS)(DPN)(DLY)(DAL)(DVA)(DPN)G(MED)(DTH)(DAR)(DSN)(DAL) (DPN)(DAL)(DSG)(DLE)(DPR)(DLE)(DTR)(DLY)(DGN)(DGN)(DHI)(DLE)(DLY)(DLY)(DGL)(DLY) G(DLE)(DPN) ; _entity_poly.pdbx_seq_one_letter_code_can LSDEDFKAVFGMTRSAFANLPLWKQQHLKKEKGLF _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DLE n 1 2 DSN n 1 3 DAS n 1 4 DGL n 1 5 DAS n 1 6 DPN n 1 7 DLY n 1 8 DAL n 1 9 DVA n 1 10 DPN n 1 11 GLY n 1 12 MED n 1 13 DTH n 1 14 DAR n 1 15 DSN n 1 16 DAL n 1 17 DPN n 1 18 DAL n 1 19 DSG n 1 20 DLE n 1 21 DPR n 1 22 DLE n 1 23 DTR n 1 24 DLY n 1 25 DGN n 1 26 DGN n 1 27 DHI n 1 28 DLE n 1 29 DLY n 1 30 DLY n 1 31 DGL n 1 32 DLY n 1 33 GLY n 1 34 DLE n 1 35 DPN n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Gallus gallus' _pdbx_entity_src_syn.organism_common_name chicken _pdbx_entity_src_syn.ncbi_taxonomy_id 9031 _pdbx_entity_src_syn.details 'synthesized using Fmoc-protected D-amino acids' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 DAR 'D-peptide linking' . D-ARGININE ? 'C6 H15 N4 O2 1' 175.209 DAS 'D-peptide linking' . 'D-ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DGL 'D-peptide linking' . 'D-GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 DGN 'D-peptide linking' . D-GLUTAMINE ? 'C5 H10 N2 O3' 146.144 DHI 'D-peptide linking' . D-HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 DLE 'D-peptide linking' . D-LEUCINE ? 'C6 H13 N O2' 131.173 DLY 'D-peptide linking' . D-LYSINE ? 'C6 H14 N2 O2' 146.188 DPN 'D-peptide linking' . D-PHENYLALANINE ? 'C9 H11 N O2' 165.189 DPR 'D-peptide linking' . D-PROLINE ? 'C5 H9 N O2' 115.130 DSG 'D-peptide linking' . D-ASPARAGINE ? 'C4 H8 N2 O3' 132.118 DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093 DTH 'D-peptide linking' . D-THREONINE ? 'C4 H9 N O3' 119.119 DTR 'D-peptide linking' . D-TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 MED 'D-peptide linking' . D-METHIONINE ? 'C5 H11 N O2 S' 149.211 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DLE 1 1 1 DLE DLE A . n A 1 2 DSN 2 2 2 DSN DSN A . n A 1 3 DAS 3 3 3 DAS DAS A . n A 1 4 DGL 4 4 4 DGL DGL A . n A 1 5 DAS 5 5 5 DAS DAS A . n A 1 6 DPN 6 6 6 DPN DPN A . n A 1 7 DLY 7 7 7 DLY DLY A . n A 1 8 DAL 8 8 8 DAL DAL A . n A 1 9 DVA 9 9 9 DVA DVA A . n A 1 10 DPN 10 10 10 DPN DPN A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 MED 12 12 12 MED MED A . n A 1 13 DTH 13 13 13 DTH DTH A . n A 1 14 DAR 14 14 14 DAR DAR A . n A 1 15 DSN 15 15 15 DSN DSN A . n A 1 16 DAL 16 16 16 DAL DAL A . n A 1 17 DPN 17 17 17 DPN DPN A . n A 1 18 DAL 18 18 18 DAL DAL A . n A 1 19 DSG 19 19 19 DSG DSG A . n A 1 20 DLE 20 20 20 DLE DLE A . n A 1 21 DPR 21 21 21 DPR DPR A . n A 1 22 DLE 22 22 22 DLE DLE A . n A 1 23 DTR 23 23 23 DTR DTR A . n A 1 24 DLY 24 24 24 DLY DLY A . n A 1 25 DGN 25 25 25 DGN DGN A . n A 1 26 DGN 26 26 26 DGN DGN A . n A 1 27 DHI 27 27 27 DHI DHI A . n A 1 28 DLE 28 28 28 DLE DLE A . n A 1 29 DLY 29 29 29 DLY DLY A . n A 1 30 DLY 30 30 30 DLY DLY A . n A 1 31 DGL 31 31 31 DGL DGL A . n A 1 32 DLY 32 32 32 DLY DLY A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 DLE 34 34 34 DLE DLE A . n A 1 35 DPN 35 35 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 36 35 SO4 SO4 A . C 3 HOH 1 37 37 HOH HOH A . C 3 HOH 2 38 38 HOH HOH A . C 3 HOH 3 39 36 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SAINT V7.68A ? package ? ? 'data reduction' http://www.bruker-axs.de/ ? ? 2 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 'PROTEUM PLUS' PLUS ? ? ? ? 'data reduction' ? ? ? 5 SAINT . ? ? ? ? 'data scaling' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? # _cell.entry_id 3TRY _cell.length_a 63.128 _cell.length_b 63.128 _cell.length_c 39.135 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3TRY _symmetry.space_group_name_H-M 'I -4 c 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 120 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3TRY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_percent_sol 48.45 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.75 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2.0 M ammonium sulfate, 6% isopropanol, pH 5.75, VAPOR DIFFUSION, HANGING DROP, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'BRUKER SMART 6000' _diffrn_detector.pdbx_collection_date 2011-04-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'BRUKER MICROSTAR AXS OPTICS' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54178 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'BRUKER AXS MICROSTAR' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.54178 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3TRY _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 22.319 _reflns.d_resolution_high 2.300 _reflns.number_obs 1772 _reflns.number_all 1824 _reflns.percent_possible_obs 97.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.1259 _reflns.pdbx_netI_over_sigmaI 16.3900 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 17.58 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.36 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.3122 _reflns_shell.meanI_over_sigI_obs 8.58 _reflns_shell.pdbx_redundancy 16.21 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3TRY _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 1694 _refine.ls_number_reflns_all 1824 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.319 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 97.04 _refine.ls_R_factor_obs 0.20186 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20047 _refine.ls_R_factor_R_free 0.23006 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.5 _refine.ls_number_reflns_R_free 79 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.500 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.944 _refine.B_iso_mean 20.909 _refine.aniso_B[1][1] -0.04 _refine.aniso_B[2][2] -0.04 _refine.aniso_B[3][3] 0.08 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1YRF' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.339 _refine.pdbx_overall_ESU_R_Free 0.223 _refine.overall_SU_ML 0.119 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.248 _refine.overall_SU_R_Cruickshank_DPI 0.3166 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 3TRY _refine_analyze.Luzzati_coordinate_error_obs 0.317 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 277 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 285 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 22.319 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.019 ? 287 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.750 2.579 ? 383 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 3.718 5.000 ? 33 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.075 24.615 ? 13 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11.171 15.000 ? 1 'X-RAY DIFFRACTION' ? r_chiral_restr 0.107 0.200 ? 39 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.021 ? 206 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.412 1.500 ? 168 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.851 2.000 ? 265 'X-RAY DIFFRACTION' ? r_scbond_it 1.385 3.000 ? 119 'X-RAY DIFFRACTION' ? r_scangle_it 2.472 4.500 ? 118 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.572 _refine_ls_shell.number_reflns_R_work 474 _refine_ls_shell.R_factor_R_work 0.267 _refine_ls_shell.percent_reflns_obs 96.46 _refine_ls_shell.R_factor_R_free 0.262 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 16 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3TRY _struct.title 'Crystal structure of racemic villin headpiece subdomain in space group I-4c2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3TRY _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text 'racemate, STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VILI_CHICK _struct_ref.pdbx_db_accession P02640 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code LSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKGLF _struct_ref.pdbx_align_begin 792 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3TRY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 35 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02640 _struct_ref_seq.db_align_beg 792 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 826 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 35 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3TRY _struct_ref_seq_dif.mon_id DHI _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 27 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P02640 _struct_ref_seq_dif.db_mon_id ASN _struct_ref_seq_dif.pdbx_seq_db_seq_num 818 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 27 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 DSN A 2 ? GLY A 11 ? DSN A 2 GLY A 11 1 ? 10 HELX_P HELX_P2 2 DTH A 13 ? DSG A 19 ? DTH A 13 DSG A 19 1 ? 7 HELX_P HELX_P3 3 DPR A 21 ? GLY A 33 ? DPR A 21 GLY A 33 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DLE 1 C ? ? ? 1_555 A DSN 2 N ? ? A DLE 1 A DSN 2 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale both ? A DSN 2 C ? ? ? 1_555 A DAS 3 N ? ? A DSN 2 A DAS 3 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale3 covale both ? A DAS 3 C ? ? ? 1_555 A DGL 4 N ? ? A DAS 3 A DGL 4 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale4 covale both ? A DGL 4 C ? ? ? 1_555 A DAS 5 N ? ? A DGL 4 A DAS 5 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A DAS 5 C ? ? ? 1_555 A DPN 6 N ? ? A DAS 5 A DPN 6 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? A DPN 6 C ? ? ? 1_555 A DLY 7 N ? ? A DPN 6 A DLY 7 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale7 covale both ? A DLY 7 C ? ? ? 1_555 A DAL 8 N ? ? A DLY 7 A DAL 8 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale8 covale both ? A DAL 8 C ? ? ? 1_555 A DVA 9 N ? ? A DAL 8 A DVA 9 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale9 covale both ? A DVA 9 C ? ? ? 1_555 A DPN 10 N ? ? A DVA 9 A DPN 10 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale10 covale both ? A DPN 10 C ? ? ? 1_555 A GLY 11 N ? ? A DPN 10 A GLY 11 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale11 covale both ? A GLY 11 C ? ? ? 1_555 A MED 12 N ? ? A GLY 11 A MED 12 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale12 covale both ? A MED 12 C ? ? ? 1_555 A DTH 13 N ? ? A MED 12 A DTH 13 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale13 covale both ? A DTH 13 C ? ? ? 1_555 A DAR 14 N ? ? A DTH 13 A DAR 14 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale14 covale both ? A DAR 14 C ? ? ? 1_555 A DSN 15 N ? ? A DAR 14 A DSN 15 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale15 covale both ? A DSN 15 C ? ? ? 1_555 A DAL 16 N ? ? A DSN 15 A DAL 16 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale16 covale both ? A DAL 16 C ? ? ? 1_555 A DPN 17 N ? ? A DAL 16 A DPN 17 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale17 covale both ? A DPN 17 C ? ? ? 1_555 A DAL 18 N ? ? A DPN 17 A DAL 18 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale18 covale both ? A DAL 18 C ? ? ? 1_555 A DSG 19 N ? ? A DAL 18 A DSG 19 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale19 covale both ? A DSG 19 C ? ? ? 1_555 A DLE 20 N ? ? A DSG 19 A DLE 20 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale20 covale both ? A DLE 20 C ? ? ? 1_555 A DPR 21 N ? ? A DLE 20 A DPR 21 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale21 covale both ? A DPR 21 C ? ? ? 1_555 A DLE 22 N ? ? A DPR 21 A DLE 22 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale22 covale both ? A DLE 22 C ? ? ? 1_555 A DTR 23 N ? ? A DLE 22 A DTR 23 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale23 covale both ? A DTR 23 C ? ? ? 1_555 A DLY 24 N ? ? A DTR 23 A DLY 24 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale24 covale both ? A DLY 24 C ? ? ? 1_555 A DGN 25 N ? ? A DLY 24 A DGN 25 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale25 covale both ? A DGN 25 C ? ? ? 1_555 A DGN 26 N ? ? A DGN 25 A DGN 26 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale26 covale both ? A DGN 26 C ? ? ? 1_555 A DHI 27 N ? ? A DGN 26 A DHI 27 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale27 covale both ? A DHI 27 C ? ? ? 1_555 A DLE 28 N ? ? A DHI 27 A DLE 28 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale28 covale both ? A DLE 28 C ? ? ? 1_555 A DLY 29 N ? ? A DLE 28 A DLY 29 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale29 covale both ? A DLY 29 C ? ? ? 1_555 A DLY 30 N ? ? A DLY 29 A DLY 30 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale30 covale both ? A DLY 30 C ? ? ? 1_555 A DGL 31 N ? ? A DLY 30 A DGL 31 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale31 covale both ? A DGL 31 C ? ? ? 1_555 A DLY 32 N ? ? A DGL 31 A DLY 32 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale32 covale both ? A DLY 32 C ? ? ? 1_555 A GLY 33 N ? ? A DLY 32 A GLY 33 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale33 covale both ? A GLY 33 C ? ? ? 1_555 A DLE 34 N ? ? A GLY 33 A DLE 34 1_555 ? ? ? ? ? ? ? 1.334 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id SO4 _struct_site.pdbx_auth_seq_id 36 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 36' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 DAS A 3 ? DAS A 3 . ? 1_555 ? 2 AC1 5 DTH A 13 ? DTH A 13 . ? 1_555 ? 3 AC1 5 DAR A 14 ? DAR A 14 . ? 1_555 ? 4 AC1 5 DSN A 15 ? DSN A 15 . ? 1_555 ? 5 AC1 5 DTR A 23 ? DTR A 23 . ? 6_555 ? # _pdbx_entry_details.entry_id 3TRY _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A DAR 14 ? ? CZ A DAR 14 ? ? NH1 A DAR 14 ? ? 124.32 120.30 4.02 0.50 N 2 1 NE A DAR 14 ? ? CZ A DAR 14 ? ? NH2 A DAR 14 ? ? 117.08 120.30 -3.22 0.50 N # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id DPN _pdbx_unobs_or_zero_occ_residues.auth_seq_id 35 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id DPN _pdbx_unobs_or_zero_occ_residues.label_seq_id 35 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 DAL N N N N 18 DAL CA C N R 19 DAL CB C N N 20 DAL C C N N 21 DAL O O N N 22 DAL OXT O N N 23 DAL H H N N 24 DAL H2 H N N 25 DAL HA H N N 26 DAL HB1 H N N 27 DAL HB2 H N N 28 DAL HB3 H N N 29 DAL HXT H N N 30 DAR N N N N 31 DAR CA C N R 32 DAR CB C N N 33 DAR CG C N N 34 DAR CD C N N 35 DAR NE N N N 36 DAR CZ C N N 37 DAR NH1 N N N 38 DAR NH2 N N N 39 DAR C C N N 40 DAR O O N N 41 DAR OXT O N N 42 DAR H H N N 43 DAR H2 H N N 44 DAR HA H N N 45 DAR HB2 H N N 46 DAR HB3 H N N 47 DAR HG2 H N N 48 DAR HG3 H N N 49 DAR HD2 H N N 50 DAR HD3 H N N 51 DAR HE H N N 52 DAR HH11 H N N 53 DAR HH12 H N N 54 DAR HH21 H N N 55 DAR HH22 H N N 56 DAR HXT H N N 57 DAS N N N N 58 DAS CA C N R 59 DAS C C N N 60 DAS O O N N 61 DAS CB C N N 62 DAS CG C N N 63 DAS OD1 O N N 64 DAS OD2 O N N 65 DAS OXT O N N 66 DAS H H N N 67 DAS H2 H N N 68 DAS HA H N N 69 DAS HB2 H N N 70 DAS HB3 H N N 71 DAS HD2 H N N 72 DAS HXT H N N 73 DGL N N N N 74 DGL CA C N R 75 DGL C C N N 76 DGL O O N N 77 DGL CB C N N 78 DGL CG C N N 79 DGL CD C N N 80 DGL OE1 O N N 81 DGL OE2 O N N 82 DGL OXT O N N 83 DGL H H N N 84 DGL H2 H N N 85 DGL HA H N N 86 DGL HB2 H N N 87 DGL HB3 H N N 88 DGL HG2 H N N 89 DGL HG3 H N N 90 DGL HE2 H N N 91 DGL HXT H N N 92 DGN N N N N 93 DGN CA C N R 94 DGN C C N N 95 DGN O O N N 96 DGN OXT O N N 97 DGN CB C N N 98 DGN CG C N N 99 DGN CD C N N 100 DGN OE1 O N N 101 DGN NE2 N N N 102 DGN H H N N 103 DGN H2 H N N 104 DGN HA H N N 105 DGN HXT H N N 106 DGN HB2 H N N 107 DGN HB3 H N N 108 DGN HG2 H N N 109 DGN HG3 H N N 110 DGN HE21 H N N 111 DGN HE22 H N N 112 DHI N N N N 113 DHI CA C N R 114 DHI C C N N 115 DHI O O N N 116 DHI CB C N N 117 DHI CG C Y N 118 DHI ND1 N Y N 119 DHI CD2 C Y N 120 DHI CE1 C Y N 121 DHI NE2 N Y N 122 DHI OXT O N N 123 DHI H H N N 124 DHI H2 H N N 125 DHI HA H N N 126 DHI HB2 H N N 127 DHI HB3 H N N 128 DHI HD1 H N N 129 DHI HD2 H N N 130 DHI HE1 H N N 131 DHI HE2 H N N 132 DHI HXT H N N 133 DLE N N N N 134 DLE CA C N R 135 DLE CB C N N 136 DLE CG C N N 137 DLE CD1 C N N 138 DLE CD2 C N N 139 DLE C C N N 140 DLE O O N N 141 DLE OXT O N N 142 DLE H H N N 143 DLE H2 H N N 144 DLE HA H N N 145 DLE HB2 H N N 146 DLE HB3 H N N 147 DLE HG H N N 148 DLE HD11 H N N 149 DLE HD12 H N N 150 DLE HD13 H N N 151 DLE HD21 H N N 152 DLE HD22 H N N 153 DLE HD23 H N N 154 DLE HXT H N N 155 DLY N N N N 156 DLY CA C N R 157 DLY C C N N 158 DLY O O N N 159 DLY CB C N N 160 DLY CG C N N 161 DLY CD C N N 162 DLY CE C N N 163 DLY NZ N N N 164 DLY OXT O N N 165 DLY H H N N 166 DLY H2 H N N 167 DLY HA H N N 168 DLY HB2 H N N 169 DLY HB3 H N N 170 DLY HG2 H N N 171 DLY HG3 H N N 172 DLY HD2 H N N 173 DLY HD3 H N N 174 DLY HE2 H N N 175 DLY HE3 H N N 176 DLY HZ1 H N N 177 DLY HZ2 H N N 178 DLY HXT H N N 179 DPN N N N N 180 DPN CA C N R 181 DPN C C N N 182 DPN O O N N 183 DPN OXT O N N 184 DPN CB C N N 185 DPN CG C Y N 186 DPN CD1 C Y N 187 DPN CD2 C Y N 188 DPN CE1 C Y N 189 DPN CE2 C Y N 190 DPN CZ C Y N 191 DPN H H N N 192 DPN H2 H N N 193 DPN HA H N N 194 DPN HXT H N N 195 DPN HB2 H N N 196 DPN HB3 H N N 197 DPN HD1 H N N 198 DPN HD2 H N N 199 DPN HE1 H N N 200 DPN HE2 H N N 201 DPN HZ H N N 202 DPR N N N N 203 DPR CA C N R 204 DPR CB C N N 205 DPR CG C N N 206 DPR CD C N N 207 DPR C C N N 208 DPR O O N N 209 DPR OXT O N N 210 DPR H H N N 211 DPR HA H N N 212 DPR HB2 H N N 213 DPR HB3 H N N 214 DPR HG2 H N N 215 DPR HG3 H N N 216 DPR HD2 H N N 217 DPR HD3 H N N 218 DPR HXT H N N 219 DSG N N N N 220 DSG CA C N R 221 DSG C C N N 222 DSG O O N N 223 DSG CB C N N 224 DSG CG C N N 225 DSG OD1 O N N 226 DSG ND2 N N N 227 DSG OXT O N N 228 DSG H H N N 229 DSG H2 H N N 230 DSG HA H N N 231 DSG HB2 H N N 232 DSG HB3 H N N 233 DSG HD21 H N N 234 DSG HD22 H N N 235 DSG HXT H N N 236 DSN N N N N 237 DSN CA C N R 238 DSN C C N N 239 DSN O O N N 240 DSN OXT O N N 241 DSN CB C N N 242 DSN OG O N N 243 DSN H H N N 244 DSN H2 H N N 245 DSN HA H N N 246 DSN HXT H N N 247 DSN HB2 H N N 248 DSN HB3 H N N 249 DSN HG H N N 250 DTH N N N N 251 DTH CA C N R 252 DTH CB C N S 253 DTH CG2 C N N 254 DTH OG1 O N N 255 DTH C C N N 256 DTH O O N N 257 DTH OXT O N N 258 DTH H H N N 259 DTH H2 H N N 260 DTH HA H N N 261 DTH HB H N N 262 DTH HG21 H N N 263 DTH HG22 H N N 264 DTH HG23 H N N 265 DTH HG1 H N N 266 DTH HXT H N N 267 DTR N N N N 268 DTR CA C N R 269 DTR CB C N N 270 DTR CG C Y N 271 DTR CD1 C Y N 272 DTR NE1 N Y N 273 DTR CE2 C Y N 274 DTR CZ2 C Y N 275 DTR CH2 C Y N 276 DTR CZ3 C Y N 277 DTR CE3 C Y N 278 DTR CD2 C Y N 279 DTR C C N N 280 DTR O O N N 281 DTR OXT O N N 282 DTR H H N N 283 DTR H2 H N N 284 DTR HA H N N 285 DTR HB2 H N N 286 DTR HB3 H N N 287 DTR HD1 H N N 288 DTR HE1 H N N 289 DTR HZ2 H N N 290 DTR HH2 H N N 291 DTR HZ3 H N N 292 DTR HE3 H N N 293 DTR HXT H N N 294 DVA N N N N 295 DVA CA C N R 296 DVA CB C N N 297 DVA CG1 C N N 298 DVA CG2 C N N 299 DVA C C N N 300 DVA O O N N 301 DVA OXT O N N 302 DVA H H N N 303 DVA H2 H N N 304 DVA HA H N N 305 DVA HB H N N 306 DVA HG11 H N N 307 DVA HG12 H N N 308 DVA HG13 H N N 309 DVA HG21 H N N 310 DVA HG22 H N N 311 DVA HG23 H N N 312 DVA HXT H N N 313 GLY N N N N 314 GLY CA C N N 315 GLY C C N N 316 GLY O O N N 317 GLY OXT O N N 318 GLY H H N N 319 GLY H2 H N N 320 GLY HA2 H N N 321 GLY HA3 H N N 322 GLY HXT H N N 323 HOH O O N N 324 HOH H1 H N N 325 HOH H2 H N N 326 MED N N N N 327 MED CA C N R 328 MED C C N N 329 MED O O N N 330 MED CB C N N 331 MED CG C N N 332 MED SD S N N 333 MED CE C N N 334 MED OXT O N N 335 MED H H N N 336 MED H2 H N N 337 MED HA H N N 338 MED HB2 H N N 339 MED HB3 H N N 340 MED HG2 H N N 341 MED HG3 H N N 342 MED HE1 H N N 343 MED HE2 H N N 344 MED HE3 H N N 345 MED HXT H N N 346 SO4 S S N N 347 SO4 O1 O N N 348 SO4 O2 O N N 349 SO4 O3 O N N 350 SO4 O4 O N N 351 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 DAL N CA sing N N 17 DAL N H sing N N 18 DAL N H2 sing N N 19 DAL CA CB sing N N 20 DAL CA C sing N N 21 DAL CA HA sing N N 22 DAL CB HB1 sing N N 23 DAL CB HB2 sing N N 24 DAL CB HB3 sing N N 25 DAL C O doub N N 26 DAL C OXT sing N N 27 DAL OXT HXT sing N N 28 DAR N CA sing N N 29 DAR N H sing N N 30 DAR N H2 sing N N 31 DAR CA CB sing N N 32 DAR CA C sing N N 33 DAR CA HA sing N N 34 DAR CB CG sing N N 35 DAR CB HB2 sing N N 36 DAR CB HB3 sing N N 37 DAR CG CD sing N N 38 DAR CG HG2 sing N N 39 DAR CG HG3 sing N N 40 DAR CD NE sing N N 41 DAR CD HD2 sing N N 42 DAR CD HD3 sing N N 43 DAR NE CZ sing N N 44 DAR NE HE sing N N 45 DAR CZ NH1 sing N N 46 DAR CZ NH2 doub N N 47 DAR NH1 HH11 sing N N 48 DAR NH1 HH12 sing N N 49 DAR NH2 HH21 sing N N 50 DAR NH2 HH22 sing N N 51 DAR C O doub N N 52 DAR C OXT sing N N 53 DAR OXT HXT sing N N 54 DAS N CA sing N N 55 DAS N H sing N N 56 DAS N H2 sing N N 57 DAS CA C sing N N 58 DAS CA CB sing N N 59 DAS CA HA sing N N 60 DAS C O doub N N 61 DAS C OXT sing N N 62 DAS CB CG sing N N 63 DAS CB HB2 sing N N 64 DAS CB HB3 sing N N 65 DAS CG OD1 doub N N 66 DAS CG OD2 sing N N 67 DAS OD2 HD2 sing N N 68 DAS OXT HXT sing N N 69 DGL N CA sing N N 70 DGL N H sing N N 71 DGL N H2 sing N N 72 DGL CA C sing N N 73 DGL CA CB sing N N 74 DGL CA HA sing N N 75 DGL C O doub N N 76 DGL C OXT sing N N 77 DGL CB CG sing N N 78 DGL CB HB2 sing N N 79 DGL CB HB3 sing N N 80 DGL CG CD sing N N 81 DGL CG HG2 sing N N 82 DGL CG HG3 sing N N 83 DGL CD OE1 doub N N 84 DGL CD OE2 sing N N 85 DGL OE2 HE2 sing N N 86 DGL OXT HXT sing N N 87 DGN N CA sing N N 88 DGN N H sing N N 89 DGN N H2 sing N N 90 DGN CA C sing N N 91 DGN CA CB sing N N 92 DGN CA HA sing N N 93 DGN C O doub N N 94 DGN C OXT sing N N 95 DGN OXT HXT sing N N 96 DGN CB CG sing N N 97 DGN CB HB2 sing N N 98 DGN CB HB3 sing N N 99 DGN CG CD sing N N 100 DGN CG HG2 sing N N 101 DGN CG HG3 sing N N 102 DGN CD OE1 doub N N 103 DGN CD NE2 sing N N 104 DGN NE2 HE21 sing N N 105 DGN NE2 HE22 sing N N 106 DHI N CA sing N N 107 DHI N H sing N N 108 DHI N H2 sing N N 109 DHI CA C sing N N 110 DHI CA CB sing N N 111 DHI CA HA sing N N 112 DHI C O doub N N 113 DHI C OXT sing N N 114 DHI CB CG sing N N 115 DHI CB HB2 sing N N 116 DHI CB HB3 sing N N 117 DHI CG ND1 sing Y N 118 DHI CG CD2 doub Y N 119 DHI ND1 CE1 doub Y N 120 DHI ND1 HD1 sing N N 121 DHI CD2 NE2 sing Y N 122 DHI CD2 HD2 sing N N 123 DHI CE1 NE2 sing Y N 124 DHI CE1 HE1 sing N N 125 DHI NE2 HE2 sing N N 126 DHI OXT HXT sing N N 127 DLE N CA sing N N 128 DLE N H sing N N 129 DLE N H2 sing N N 130 DLE CA CB sing N N 131 DLE CA C sing N N 132 DLE CA HA sing N N 133 DLE CB CG sing N N 134 DLE CB HB2 sing N N 135 DLE CB HB3 sing N N 136 DLE CG CD1 sing N N 137 DLE CG CD2 sing N N 138 DLE CG HG sing N N 139 DLE CD1 HD11 sing N N 140 DLE CD1 HD12 sing N N 141 DLE CD1 HD13 sing N N 142 DLE CD2 HD21 sing N N 143 DLE CD2 HD22 sing N N 144 DLE CD2 HD23 sing N N 145 DLE C O doub N N 146 DLE C OXT sing N N 147 DLE OXT HXT sing N N 148 DLY N CA sing N N 149 DLY N H sing N N 150 DLY N H2 sing N N 151 DLY CA C sing N N 152 DLY CA CB sing N N 153 DLY CA HA sing N N 154 DLY C O doub N N 155 DLY C OXT sing N N 156 DLY CB CG sing N N 157 DLY CB HB2 sing N N 158 DLY CB HB3 sing N N 159 DLY CG CD sing N N 160 DLY CG HG2 sing N N 161 DLY CG HG3 sing N N 162 DLY CD CE sing N N 163 DLY CD HD2 sing N N 164 DLY CD HD3 sing N N 165 DLY CE NZ sing N N 166 DLY CE HE2 sing N N 167 DLY CE HE3 sing N N 168 DLY NZ HZ1 sing N N 169 DLY NZ HZ2 sing N N 170 DLY OXT HXT sing N N 171 DPN N CA sing N N 172 DPN N H sing N N 173 DPN N H2 sing N N 174 DPN CA C sing N N 175 DPN CA CB sing N N 176 DPN CA HA sing N N 177 DPN C O doub N N 178 DPN C OXT sing N N 179 DPN OXT HXT sing N N 180 DPN CB CG sing N N 181 DPN CB HB2 sing N N 182 DPN CB HB3 sing N N 183 DPN CG CD1 doub Y N 184 DPN CG CD2 sing Y N 185 DPN CD1 CE1 sing Y N 186 DPN CD1 HD1 sing N N 187 DPN CD2 CE2 doub Y N 188 DPN CD2 HD2 sing N N 189 DPN CE1 CZ doub Y N 190 DPN CE1 HE1 sing N N 191 DPN CE2 CZ sing Y N 192 DPN CE2 HE2 sing N N 193 DPN CZ HZ sing N N 194 DPR N CA sing N N 195 DPR N CD sing N N 196 DPR N H sing N N 197 DPR CA CB sing N N 198 DPR CA C sing N N 199 DPR CA HA sing N N 200 DPR CB CG sing N N 201 DPR CB HB2 sing N N 202 DPR CB HB3 sing N N 203 DPR CG CD sing N N 204 DPR CG HG2 sing N N 205 DPR CG HG3 sing N N 206 DPR CD HD2 sing N N 207 DPR CD HD3 sing N N 208 DPR C O doub N N 209 DPR C OXT sing N N 210 DPR OXT HXT sing N N 211 DSG N CA sing N N 212 DSG N H sing N N 213 DSG N H2 sing N N 214 DSG CA C sing N N 215 DSG CA CB sing N N 216 DSG CA HA sing N N 217 DSG C O doub N N 218 DSG C OXT sing N N 219 DSG CB CG sing N N 220 DSG CB HB2 sing N N 221 DSG CB HB3 sing N N 222 DSG CG OD1 doub N N 223 DSG CG ND2 sing N N 224 DSG ND2 HD21 sing N N 225 DSG ND2 HD22 sing N N 226 DSG OXT HXT sing N N 227 DSN N CA sing N N 228 DSN N H sing N N 229 DSN N H2 sing N N 230 DSN CA C sing N N 231 DSN CA CB sing N N 232 DSN CA HA sing N N 233 DSN C O doub N N 234 DSN C OXT sing N N 235 DSN OXT HXT sing N N 236 DSN CB OG sing N N 237 DSN CB HB2 sing N N 238 DSN CB HB3 sing N N 239 DSN OG HG sing N N 240 DTH N CA sing N N 241 DTH N H sing N N 242 DTH N H2 sing N N 243 DTH CA CB sing N N 244 DTH CA C sing N N 245 DTH CA HA sing N N 246 DTH CB CG2 sing N N 247 DTH CB OG1 sing N N 248 DTH CB HB sing N N 249 DTH CG2 HG21 sing N N 250 DTH CG2 HG22 sing N N 251 DTH CG2 HG23 sing N N 252 DTH OG1 HG1 sing N N 253 DTH C O doub N N 254 DTH C OXT sing N N 255 DTH OXT HXT sing N N 256 DTR N CA sing N N 257 DTR N H sing N N 258 DTR N H2 sing N N 259 DTR CA CB sing N N 260 DTR CA C sing N N 261 DTR CA HA sing N N 262 DTR CB CG sing N N 263 DTR CB HB2 sing N N 264 DTR CB HB3 sing N N 265 DTR CG CD1 doub Y N 266 DTR CG CD2 sing Y N 267 DTR CD1 NE1 sing Y N 268 DTR CD1 HD1 sing N N 269 DTR NE1 CE2 sing Y N 270 DTR NE1 HE1 sing N N 271 DTR CE2 CZ2 doub Y N 272 DTR CE2 CD2 sing Y N 273 DTR CZ2 CH2 sing Y N 274 DTR CZ2 HZ2 sing N N 275 DTR CH2 CZ3 doub Y N 276 DTR CH2 HH2 sing N N 277 DTR CZ3 CE3 sing Y N 278 DTR CZ3 HZ3 sing N N 279 DTR CE3 CD2 doub Y N 280 DTR CE3 HE3 sing N N 281 DTR C O doub N N 282 DTR C OXT sing N N 283 DTR OXT HXT sing N N 284 DVA N CA sing N N 285 DVA N H sing N N 286 DVA N H2 sing N N 287 DVA CA CB sing N N 288 DVA CA C sing N N 289 DVA CA HA sing N N 290 DVA CB CG1 sing N N 291 DVA CB CG2 sing N N 292 DVA CB HB sing N N 293 DVA CG1 HG11 sing N N 294 DVA CG1 HG12 sing N N 295 DVA CG1 HG13 sing N N 296 DVA CG2 HG21 sing N N 297 DVA CG2 HG22 sing N N 298 DVA CG2 HG23 sing N N 299 DVA C O doub N N 300 DVA C OXT sing N N 301 DVA OXT HXT sing N N 302 GLY N CA sing N N 303 GLY N H sing N N 304 GLY N H2 sing N N 305 GLY CA C sing N N 306 GLY CA HA2 sing N N 307 GLY CA HA3 sing N N 308 GLY C O doub N N 309 GLY C OXT sing N N 310 GLY OXT HXT sing N N 311 HOH O H1 sing N N 312 HOH O H2 sing N N 313 MED N CA sing N N 314 MED N H sing N N 315 MED N H2 sing N N 316 MED CA C sing N N 317 MED CA CB sing N N 318 MED CA HA sing N N 319 MED C O doub N N 320 MED C OXT sing N N 321 MED CB CG sing N N 322 MED CB HB2 sing N N 323 MED CB HB3 sing N N 324 MED CG SD sing N N 325 MED CG HG2 sing N N 326 MED CG HG3 sing N N 327 MED SD CE sing N N 328 MED CE HE1 sing N N 329 MED CE HE2 sing N N 330 MED CE HE3 sing N N 331 MED OXT HXT sing N N 332 SO4 S O1 doub N N 333 SO4 S O2 doub N N 334 SO4 S O3 sing N N 335 SO4 S O4 sing N N 336 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1YRF _pdbx_initial_refinement_model.details 'PDB ENTRY 1YRF' # _atom_sites.entry_id 3TRY _atom_sites.fract_transf_matrix[1][1] 0.015841 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015841 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025553 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_