data_3TS0 # _entry.id 3TS0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3TS0 pdb_00003ts0 10.2210/pdb3ts0/pdb NDB NA1302 ? ? RCSB RCSB067848 ? ? WWPDB D_1000067848 ? ? # _pdbx_database_status.entry_id 3TS0 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-09-11 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nam, Y.' 1 'Sliz, P.' 2 # _citation.id primary _citation.title 'Molecular Basis for Interaction of let-7 MicroRNAs with Lin28.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 147 _citation.page_first 1080 _citation.page_last 1091 _citation.year 2011 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22078496 _citation.pdbx_database_id_DOI 10.1016/j.cell.2011.10.020 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nam, Y.' 1 ? primary 'Chen, C.' 2 ? primary 'Gregory, R.I.' 3 ? primary 'Chou, J.J.' 4 ? primary 'Sliz, P.' 5 ? # _cell.entry_id 3TS0 _cell.length_a 139.880 _cell.length_b 139.880 _cell.length_c 85.550 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TS0 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein lin-28 homolog A' 15924.437 2 ? ? ? ? 2 polymer syn ;RNA (5'-R(*GP*GP*GP*GP*UP*AP*GP*UP*GP*AP*UP*UP*UP*UP*AP*CP*CP*CP*UP*GP*GP*AP*G)-3') ; 7357.444 2 ? ? ? preE-let-7f-1 3 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Lin-28A, Testis-expressed protein 17' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DEPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIRVTGP GGVFCIGSERRPKGGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSINHMVASCPLKAQQGPSSQGK ; ;DEPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIRVTGP GGVFCIGSERRPKGGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSINHMVASCPLKAQQGPSSQGK ; A,B ? 2 polyribonucleotide no yes '(GMP)GGGUAGUGAUUUUACCCUGGAG' XGGGUAGUGAUUUUACCCUGGAG U,V ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 GLU n 1 3 PRO n 1 4 GLN n 1 5 LEU n 1 6 LEU n 1 7 HIS n 1 8 GLY n 1 9 ALA n 1 10 GLY n 1 11 ILE n 1 12 CYS n 1 13 LYS n 1 14 TRP n 1 15 PHE n 1 16 ASN n 1 17 VAL n 1 18 ARG n 1 19 MET n 1 20 GLY n 1 21 PHE n 1 22 GLY n 1 23 PHE n 1 24 LEU n 1 25 SER n 1 26 MET n 1 27 THR n 1 28 ALA n 1 29 ARG n 1 30 ALA n 1 31 GLY n 1 32 VAL n 1 33 ALA n 1 34 LEU n 1 35 ASP n 1 36 PRO n 1 37 PRO n 1 38 VAL n 1 39 ASP n 1 40 VAL n 1 41 PHE n 1 42 VAL n 1 43 HIS n 1 44 GLN n 1 45 SER n 1 46 LYS n 1 47 LEU n 1 48 HIS n 1 49 MET n 1 50 GLU n 1 51 GLY n 1 52 PHE n 1 53 ARG n 1 54 SER n 1 55 LEU n 1 56 LYS n 1 57 GLU n 1 58 GLY n 1 59 GLU n 1 60 ALA n 1 61 VAL n 1 62 GLU n 1 63 PHE n 1 64 THR n 1 65 PHE n 1 66 LYS n 1 67 LYS n 1 68 SER n 1 69 ALA n 1 70 LYS n 1 71 GLY n 1 72 LEU n 1 73 GLU n 1 74 SER n 1 75 ILE n 1 76 ARG n 1 77 VAL n 1 78 THR n 1 79 GLY n 1 80 PRO n 1 81 GLY n 1 82 GLY n 1 83 VAL n 1 84 PHE n 1 85 CYS n 1 86 ILE n 1 87 GLY n 1 88 SER n 1 89 GLU n 1 90 ARG n 1 91 ARG n 1 92 PRO n 1 93 LYS n 1 94 GLY n 1 95 GLY n 1 96 ASP n 1 97 ARG n 1 98 CYS n 1 99 TYR n 1 100 ASN n 1 101 CYS n 1 102 GLY n 1 103 GLY n 1 104 LEU n 1 105 ASP n 1 106 HIS n 1 107 HIS n 1 108 ALA n 1 109 LYS n 1 110 GLU n 1 111 CYS n 1 112 LYS n 1 113 LEU n 1 114 PRO n 1 115 PRO n 1 116 GLN n 1 117 PRO n 1 118 LYS n 1 119 LYS n 1 120 CYS n 1 121 HIS n 1 122 PHE n 1 123 CYS n 1 124 GLN n 1 125 SER n 1 126 ILE n 1 127 ASN n 1 128 HIS n 1 129 MET n 1 130 VAL n 1 131 ALA n 1 132 SER n 1 133 CYS n 1 134 PRO n 1 135 LEU n 1 136 LYS n 1 137 ALA n 1 138 GLN n 1 139 GLN n 1 140 GLY n 1 141 PRO n 1 142 SER n 1 143 SER n 1 144 GLN n 1 145 GLY n 1 146 LYS n 2 1 GMP n 2 2 G n 2 3 G n 2 4 G n 2 5 U n 2 6 A n 2 7 G n 2 8 U n 2 9 G n 2 10 A n 2 11 U n 2 12 U n 2 13 U n 2 14 U n 2 15 A n 2 16 C n 2 17 C n 2 18 C n 2 19 U n 2 20 G n 2 21 G n 2 22 A n 2 23 G n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Lin28, Lin28a, Tex17' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'RNA oligonucleotide' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP LN28A_MOUSE Q8K3Y3 1 ;DEPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIRVTGP GGVFCIGSERRPKGKNMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSINHMVASCPLKAQQGPSSQGK ; 33 ? 2 PDB 3TS0 3TS0 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3TS0 A 1 ? 146 ? Q8K3Y3 33 ? 187 ? 33 187 2 1 3TS0 B 1 ? 146 ? Q8K3Y3 33 ? 187 ? 33 187 3 2 3TS0 U 1 ? 23 ? 3TS0 1 ? 23 ? 1 23 4 2 3TS0 V 1 ? 23 ? 3TS0 1 ? 23 ? 1 23 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3TS0 ? A ? ? UNP Q8K3Y3 LYS 127 deletion ? 1 1 3TS0 ? A ? ? UNP Q8K3Y3 ASN 128 deletion ? 2 1 3TS0 ? A ? ? UNP Q8K3Y3 MET 129 deletion ? 3 1 3TS0 ? A ? ? UNP Q8K3Y3 GLN 130 deletion ? 4 1 3TS0 ? A ? ? UNP Q8K3Y3 LYS 131 deletion ? 5 1 3TS0 ? A ? ? UNP Q8K3Y3 ARG 132 deletion ? 6 1 3TS0 ? A ? ? UNP Q8K3Y3 ARG 133 deletion ? 7 1 3TS0 ? A ? ? UNP Q8K3Y3 SER 134 deletion ? 8 1 3TS0 ? A ? ? UNP Q8K3Y3 LYS 135 deletion ? 9 2 3TS0 ? B ? ? UNP Q8K3Y3 LYS 127 deletion ? 10 2 3TS0 ? B ? ? UNP Q8K3Y3 ASN 128 deletion ? 11 2 3TS0 ? B ? ? UNP Q8K3Y3 MET 129 deletion ? 12 2 3TS0 ? B ? ? UNP Q8K3Y3 GLN 130 deletion ? 13 2 3TS0 ? B ? ? UNP Q8K3Y3 LYS 131 deletion ? 14 2 3TS0 ? B ? ? UNP Q8K3Y3 ARG 132 deletion ? 15 2 3TS0 ? B ? ? UNP Q8K3Y3 ARG 133 deletion ? 16 2 3TS0 ? B ? ? UNP Q8K3Y3 SER 134 deletion ? 17 2 3TS0 ? B ? ? UNP Q8K3Y3 LYS 135 deletion ? 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GMP non-polymer . GUANOSINE ? 'C10 H13 N5 O5' 283.241 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.entry_id 3TS0 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 4.48 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 72.53 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 7 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '0.6M NaH2PO4, 1.4M K2HPO4, pH 7, vapor diffusion, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-09-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.979500 1.0 2 1 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_wavelength 0.979500 _diffrn_source.pdbx_synchrotron_beamline X25 # _reflns.entry_id 3TS0 _reflns.d_resolution_high 2.763 _reflns.d_resolution_low 72.980 _reflns.number_obs 22328 _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.pdbx_netI_over_sigmaI 28.200 _reflns.pdbx_Rsym_value 0.060 _reflns.pdbx_redundancy 8.000 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F . _reflns.observed_criterion_sigma_I -3 _reflns.number_all 22328 _reflns.B_iso_Wilson_estimate 78.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.763 _reflns_shell.d_res_low 2.772 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.629 _reflns_shell.meanI_over_sigI_obs 3.300 _reflns_shell.pdbx_Rsym_value 0.629 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_redundancy 8.300 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.percent_possible_all 100.000 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3TS0 _refine.ls_d_res_high 2.7630 _refine.ls_d_res_low 72.9800 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.6000 _refine.ls_number_reflns_obs 22279 _refine.ls_number_reflns_all 22279 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all 0.1941 _refine.ls_R_factor_obs 0.1941 _refine.ls_R_factor_R_work 0.1930 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2145 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1500 _refine.ls_number_reflns_R_free 1148 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 74.7989 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc 0.9069 _refine.correlation_coeff_Fo_to_Fc_free 0.8901 _refine.overall_SU_R_Cruickshank_DPI 0.2920 _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 3TRZ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 165.790 _refine.B_iso_min 38.450 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3TS0 _refine_analyze.Luzzati_coordinate_error_obs 0.447 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2080 _refine_hist.pdbx_number_atoms_nucleic_acid 984 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3068 _refine_hist.d_res_high 2.7630 _refine_hist.d_res_low 72.9800 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' t_dihedral_angle_d 1286 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 38 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 366 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 3234 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd 3 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 438 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 3197 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 3234 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 4574 1.360 ? 2.000 HARMONIC # _refine_ls_shell.d_res_high 2.7630 _refine_ls_shell.d_res_low 2.9000 _refine_ls_shell.pdbx_total_number_of_bins_used 11 _refine_ls_shell.percent_reflns_obs 99.6000 _refine_ls_shell.number_reflns_R_work 2666 _refine_ls_shell.R_factor_all 0.2319 _refine_ls_shell.R_factor_R_work 0.2311 _refine_ls_shell.R_factor_R_free 0.2440 _refine_ls_shell.percent_reflns_R_free 6.0600 _refine_ls_shell.number_reflns_R_free 172 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2838 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3TS0 _struct.title 'Mouse Lin28A in complex with let-7f-1 microRNA pre-element' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3TS0 _struct_keywords.text 'microRNA biogenesis, Protein-RNA complex, pre-element, CCHC zinc knuckle, cold shock domain, RNA BINDING PROTEIN-RNA complex' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # _struct_biol.id 1 _struct_biol.details ;In the crystal forms, the authors observe a domain swap in which the Lin28 CSD interacts with the loop of one microRNA molecule, and the CCHCx2 interacts with the GGAG of a second microRNA. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 45 ? LEU A 47 ? SER A 77 LEU A 79 5 ? 3 HELX_P HELX_P2 2 GLY A 79 ? VAL A 83 ? GLY A 111 VAL A 115 5 ? 5 HELX_P HELX_P3 3 MET A 129 ? CYS A 133 ? MET A 170 CYS A 174 5 ? 5 HELX_P HELX_P4 4 SER B 45 ? LEU B 47 ? SER B 77 LEU B 79 5 ? 3 HELX_P HELX_P5 5 GLY B 79 ? VAL B 83 ? GLY B 111 VAL B 115 5 ? 5 HELX_P HELX_P6 6 MET B 129 ? CYS B 133 ? MET B 170 CYS B 174 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 98 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 139 A ZN 200 1_555 ? ? ? ? ? ? ? 2.401 ? ? metalc2 metalc ? ? A CYS 101 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 142 A ZN 200 1_555 ? ? ? ? ? ? ? 2.173 ? ? metalc3 metalc ? ? A HIS 106 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 147 A ZN 200 1_555 ? ? ? ? ? ? ? 2.450 ? ? metalc4 metalc ? ? A CYS 111 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 152 A ZN 200 1_555 ? ? ? ? ? ? ? 2.153 ? ? metalc5 metalc ? ? A CYS 120 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 161 A ZN 201 1_555 ? ? ? ? ? ? ? 2.336 ? ? metalc6 metalc ? ? A CYS 123 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 164 A ZN 201 1_555 ? ? ? ? ? ? ? 2.245 ? ? metalc7 metalc ? ? A HIS 128 NE2 ? ? ? 1_555 F ZN . ZN ? ? A HIS 169 A ZN 201 1_555 ? ? ? ? ? ? ? 1.929 ? ? metalc8 metalc ? ? A CYS 133 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 174 A ZN 201 1_555 ? ? ? ? ? ? ? 2.301 ? ? metalc9 metalc ? ? B CYS 98 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 139 B ZN 200 1_555 ? ? ? ? ? ? ? 2.451 ? ? metalc10 metalc ? ? B CYS 101 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 142 B ZN 200 1_555 ? ? ? ? ? ? ? 2.310 ? ? metalc11 metalc ? ? B HIS 106 NE2 ? ? ? 1_555 G ZN . ZN ? ? B HIS 147 B ZN 200 1_555 ? ? ? ? ? ? ? 2.433 ? ? metalc12 metalc ? ? B CYS 111 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 152 B ZN 200 1_555 ? ? ? ? ? ? ? 2.188 ? ? metalc13 metalc ? ? B CYS 120 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 161 B ZN 201 1_555 ? ? ? ? ? ? ? 2.331 ? ? metalc14 metalc ? ? B CYS 123 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 164 B ZN 201 1_555 ? ? ? ? ? ? ? 2.268 ? ? metalc15 metalc ? ? B HIS 128 NE2 ? ? ? 1_555 H ZN . ZN ? ? B HIS 169 B ZN 201 1_555 ? ? ? ? ? ? ? 1.950 ? ? metalc16 metalc ? ? B CYS 133 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 174 B ZN 201 1_555 ? ? ? ? ? ? ? 2.287 ? ? hydrog1 hydrog ? ? C G 2 N1 ? ? ? 1_555 C C 18 N3 ? ? U G 2 U C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C G 2 N2 ? ? ? 1_555 C C 18 O2 ? ? U G 2 U C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C G 2 O6 ? ? ? 1_555 C C 18 N4 ? ? U G 2 U C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C G 3 N1 ? ? ? 1_555 C C 17 N3 ? ? U G 3 U C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C G 3 N2 ? ? ? 1_555 C C 17 O2 ? ? U G 3 U C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C G 3 O6 ? ? ? 1_555 C C 17 N4 ? ? U G 3 U C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C G 4 N1 ? ? ? 1_555 C C 16 N3 ? ? U G 4 U C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C G 4 N2 ? ? ? 1_555 C C 16 O2 ? ? U G 4 U C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C G 4 O6 ? ? ? 1_555 C C 16 N4 ? ? U G 4 U C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C U 5 N3 ? ? ? 1_555 C A 15 N1 ? ? U U 5 U A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C U 5 O4 ? ? ? 1_555 C A 15 N6 ? ? U U 5 U A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C A 6 N1 ? ? ? 1_555 C U 14 N3 ? ? U A 6 U U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C A 6 N6 ? ? ? 1_555 C U 14 O4 ? ? U A 6 U U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? D G 2 N1 ? ? ? 1_555 D C 18 N3 ? ? V G 2 V C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? D G 2 N2 ? ? ? 1_555 D C 18 O2 ? ? V G 2 V C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? D G 2 O6 ? ? ? 1_555 D C 18 N4 ? ? V G 2 V C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? D G 3 N1 ? ? ? 1_555 D C 17 N3 ? ? V G 3 V C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? D G 3 N2 ? ? ? 1_555 D C 17 O2 ? ? V G 3 V C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? D G 3 O6 ? ? ? 1_555 D C 17 N4 ? ? V G 3 V C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? D G 4 N1 ? ? ? 1_555 D C 16 N3 ? ? V G 4 V C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? D G 4 N2 ? ? ? 1_555 D C 16 O2 ? ? V G 4 V C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? D G 4 O6 ? ? ? 1_555 D C 16 N4 ? ? V G 4 V C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? D U 5 N3 ? ? ? 1_555 D A 15 N1 ? ? V U 5 V A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? D U 5 O4 ? ? ? 1_555 D A 15 N6 ? ? V U 5 V A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? D A 6 N1 ? ? ? 1_555 D U 14 N3 ? ? V A 6 V U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? D A 6 N6 ? ? ? 1_555 D U 14 O4 ? ? V A 6 V U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 35 A . ? ASP 67 A PRO 36 A ? PRO 68 A 1 5.24 2 ASP 35 B . ? ASP 67 B PRO 36 B ? PRO 68 B 1 5.02 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 6 ? ASN A 16 ? LEU A 38 ASN A 48 A 2 PHE A 21 ? ARG A 29 ? PHE A 53 ARG A 61 A 3 VAL A 32 ? HIS A 43 ? VAL A 64 HIS A 75 A 4 GLY A 71 ? THR A 78 ? GLY A 103 THR A 110 A 5 ALA A 60 ? SER A 68 ? ALA A 92 SER A 100 A 6 LEU A 6 ? ASN A 16 ? LEU A 38 ASN A 48 B 1 LEU B 6 ? ASN B 16 ? LEU B 38 ASN B 48 B 2 PHE B 21 ? ARG B 29 ? PHE B 53 ARG B 61 B 3 VAL B 32 ? HIS B 43 ? VAL B 64 HIS B 75 B 4 GLY B 71 ? THR B 78 ? GLY B 103 THR B 110 B 5 ALA B 60 ? SER B 68 ? ALA B 92 SER B 100 B 6 LEU B 6 ? ASN B 16 ? LEU B 38 ASN B 48 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 11 ? N ILE A 43 O SER A 25 ? O SER A 57 A 2 3 N THR A 27 ? N THR A 59 O LEU A 34 ? O LEU A 66 A 3 4 N PHE A 41 ? N PHE A 73 O SER A 74 ? O SER A 106 A 4 5 O GLY A 71 ? O GLY A 103 N SER A 68 ? N SER A 100 A 5 6 O PHE A 65 ? O PHE A 97 N LEU A 6 ? N LEU A 38 B 1 2 N ILE B 11 ? N ILE B 43 O SER B 25 ? O SER B 57 B 2 3 N LEU B 24 ? N LEU B 56 O VAL B 40 ? O VAL B 72 B 3 4 N PHE B 41 ? N PHE B 73 O LEU B 72 ? O LEU B 104 B 4 5 O GLY B 71 ? O GLY B 103 N SER B 68 ? N SER B 100 B 5 6 O PHE B 65 ? O PHE B 97 N LEU B 6 ? N LEU B 38 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 200 ? 4 'BINDING SITE FOR RESIDUE ZN A 200' AC2 Software A ZN 201 ? 4 'BINDING SITE FOR RESIDUE ZN A 201' AC3 Software B ZN 200 ? 4 'BINDING SITE FOR RESIDUE ZN B 200' AC4 Software B ZN 201 ? 4 'BINDING SITE FOR RESIDUE ZN B 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 98 ? CYS A 139 . ? 1_555 ? 2 AC1 4 CYS A 101 ? CYS A 142 . ? 1_555 ? 3 AC1 4 HIS A 106 ? HIS A 147 . ? 1_555 ? 4 AC1 4 CYS A 111 ? CYS A 152 . ? 1_555 ? 5 AC2 4 CYS A 120 ? CYS A 161 . ? 1_555 ? 6 AC2 4 CYS A 123 ? CYS A 164 . ? 1_555 ? 7 AC2 4 HIS A 128 ? HIS A 169 . ? 1_555 ? 8 AC2 4 CYS A 133 ? CYS A 174 . ? 1_555 ? 9 AC3 4 CYS B 98 ? CYS B 139 . ? 1_555 ? 10 AC3 4 CYS B 101 ? CYS B 142 . ? 1_555 ? 11 AC3 4 HIS B 106 ? HIS B 147 . ? 1_555 ? 12 AC3 4 CYS B 111 ? CYS B 152 . ? 1_555 ? 13 AC4 4 CYS B 120 ? CYS B 161 . ? 1_555 ? 14 AC4 4 CYS B 123 ? CYS B 164 . ? 1_555 ? 15 AC4 4 HIS B 128 ? HIS B 169 . ? 1_555 ? 16 AC4 4 CYS B 133 ? CYS B 174 . ? 1_555 ? # _atom_sites.entry_id 3TS0 _atom_sites.fract_transf_matrix[1][1] 0.007149 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007149 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011689 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 33 ? ? ? A . n A 1 2 GLU 2 34 ? ? ? A . n A 1 3 PRO 3 35 35 PRO PRO A . n A 1 4 GLN 4 36 36 GLN GLN A . n A 1 5 LEU 5 37 37 LEU LEU A . n A 1 6 LEU 6 38 38 LEU LEU A . n A 1 7 HIS 7 39 39 HIS HIS A . n A 1 8 GLY 8 40 40 GLY GLY A . n A 1 9 ALA 9 41 41 ALA ALA A . n A 1 10 GLY 10 42 42 GLY GLY A . n A 1 11 ILE 11 43 43 ILE ILE A . n A 1 12 CYS 12 44 44 CYS CYS A . n A 1 13 LYS 13 45 45 LYS LYS A . n A 1 14 TRP 14 46 46 TRP TRP A . n A 1 15 PHE 15 47 47 PHE PHE A . n A 1 16 ASN 16 48 48 ASN ASN A . n A 1 17 VAL 17 49 49 VAL VAL A . n A 1 18 ARG 18 50 50 ARG ARG A . n A 1 19 MET 19 51 51 MET MET A . n A 1 20 GLY 20 52 52 GLY GLY A . n A 1 21 PHE 21 53 53 PHE PHE A . n A 1 22 GLY 22 54 54 GLY GLY A . n A 1 23 PHE 23 55 55 PHE PHE A . n A 1 24 LEU 24 56 56 LEU LEU A . n A 1 25 SER 25 57 57 SER SER A . n A 1 26 MET 26 58 58 MET MET A . n A 1 27 THR 27 59 59 THR THR A . n A 1 28 ALA 28 60 60 ALA ALA A . n A 1 29 ARG 29 61 61 ARG ARG A . n A 1 30 ALA 30 62 62 ALA ALA A . n A 1 31 GLY 31 63 63 GLY GLY A . n A 1 32 VAL 32 64 64 VAL VAL A . n A 1 33 ALA 33 65 65 ALA ALA A . n A 1 34 LEU 34 66 66 LEU LEU A . n A 1 35 ASP 35 67 67 ASP ASP A . n A 1 36 PRO 36 68 68 PRO PRO A . n A 1 37 PRO 37 69 69 PRO PRO A . n A 1 38 VAL 38 70 70 VAL VAL A . n A 1 39 ASP 39 71 71 ASP ASP A . n A 1 40 VAL 40 72 72 VAL VAL A . n A 1 41 PHE 41 73 73 PHE PHE A . n A 1 42 VAL 42 74 74 VAL VAL A . n A 1 43 HIS 43 75 75 HIS HIS A . n A 1 44 GLN 44 76 76 GLN GLN A . n A 1 45 SER 45 77 77 SER SER A . n A 1 46 LYS 46 78 78 LYS LYS A . n A 1 47 LEU 47 79 79 LEU LEU A . n A 1 48 HIS 48 80 80 HIS HIS A . n A 1 49 MET 49 81 81 MET MET A . n A 1 50 GLU 50 82 82 GLU GLU A . n A 1 51 GLY 51 83 83 GLY GLY A . n A 1 52 PHE 52 84 84 PHE PHE A . n A 1 53 ARG 53 85 85 ARG ARG A . n A 1 54 SER 54 86 86 SER SER A . n A 1 55 LEU 55 87 87 LEU LEU A . n A 1 56 LYS 56 88 88 LYS LYS A . n A 1 57 GLU 57 89 89 GLU GLU A . n A 1 58 GLY 58 90 90 GLY GLY A . n A 1 59 GLU 59 91 91 GLU GLU A . n A 1 60 ALA 60 92 92 ALA ALA A . n A 1 61 VAL 61 93 93 VAL VAL A . n A 1 62 GLU 62 94 94 GLU GLU A . n A 1 63 PHE 63 95 95 PHE PHE A . n A 1 64 THR 64 96 96 THR THR A . n A 1 65 PHE 65 97 97 PHE PHE A . n A 1 66 LYS 66 98 98 LYS LYS A . n A 1 67 LYS 67 99 99 LYS LYS A . n A 1 68 SER 68 100 100 SER SER A . n A 1 69 ALA 69 101 101 ALA ALA A . n A 1 70 LYS 70 102 102 LYS LYS A . n A 1 71 GLY 71 103 103 GLY GLY A . n A 1 72 LEU 72 104 104 LEU LEU A . n A 1 73 GLU 73 105 105 GLU GLU A . n A 1 74 SER 74 106 106 SER SER A . n A 1 75 ILE 75 107 107 ILE ILE A . n A 1 76 ARG 76 108 108 ARG ARG A . n A 1 77 VAL 77 109 109 VAL VAL A . n A 1 78 THR 78 110 110 THR THR A . n A 1 79 GLY 79 111 111 GLY GLY A . n A 1 80 PRO 80 112 112 PRO PRO A . n A 1 81 GLY 81 113 113 GLY GLY A . n A 1 82 GLY 82 114 114 GLY GLY A . n A 1 83 VAL 83 115 115 VAL VAL A . n A 1 84 PHE 84 116 116 PHE PHE A . n A 1 85 CYS 85 117 117 CYS CYS A . n A 1 86 ILE 86 118 118 ILE ILE A . n A 1 87 GLY 87 119 119 GLY GLY A . n A 1 88 SER 88 120 120 SER SER A . n A 1 89 GLU 89 121 121 GLU GLU A . n A 1 90 ARG 90 122 122 ARG ARG A . n A 1 91 ARG 91 123 123 ARG ARG A . n A 1 92 PRO 92 124 124 PRO PRO A . n A 1 93 LYS 93 125 125 LYS LYS A . n A 1 94 GLY 94 126 126 GLY GLY A . n A 1 95 GLY 95 136 136 GLY GLY A . n A 1 96 ASP 96 137 137 ASP ASP A . n A 1 97 ARG 97 138 138 ARG ARG A . n A 1 98 CYS 98 139 139 CYS CYS A . n A 1 99 TYR 99 140 140 TYR TYR A . n A 1 100 ASN 100 141 141 ASN ASN A . n A 1 101 CYS 101 142 142 CYS CYS A . n A 1 102 GLY 102 143 143 GLY GLY A . n A 1 103 GLY 103 144 144 GLY GLY A . n A 1 104 LEU 104 145 145 LEU LEU A . n A 1 105 ASP 105 146 146 ASP ASP A . n A 1 106 HIS 106 147 147 HIS HIS A . n A 1 107 HIS 107 148 148 HIS HIS A . n A 1 108 ALA 108 149 149 ALA ALA A . n A 1 109 LYS 109 150 150 LYS LYS A . n A 1 110 GLU 110 151 151 GLU GLU A . n A 1 111 CYS 111 152 152 CYS CYS A . n A 1 112 LYS 112 153 153 LYS LYS A . n A 1 113 LEU 113 154 154 LEU LEU A . n A 1 114 PRO 114 155 155 PRO PRO A . n A 1 115 PRO 115 156 156 PRO PRO A . n A 1 116 GLN 116 157 157 GLN GLN A . n A 1 117 PRO 117 158 158 PRO PRO A . n A 1 118 LYS 118 159 159 LYS LYS A . n A 1 119 LYS 119 160 160 LYS LYS A . n A 1 120 CYS 120 161 161 CYS CYS A . n A 1 121 HIS 121 162 162 HIS HIS A . n A 1 122 PHE 122 163 163 PHE PHE A . n A 1 123 CYS 123 164 164 CYS CYS A . n A 1 124 GLN 124 165 165 GLN GLN A . n A 1 125 SER 125 166 166 SER SER A . n A 1 126 ILE 126 167 167 ILE ILE A . n A 1 127 ASN 127 168 168 ASN ASN A . n A 1 128 HIS 128 169 169 HIS HIS A . n A 1 129 MET 129 170 170 MET MET A . n A 1 130 VAL 130 171 171 VAL VAL A . n A 1 131 ALA 131 172 172 ALA ALA A . n A 1 132 SER 132 173 173 SER SER A . n A 1 133 CYS 133 174 174 CYS CYS A . n A 1 134 PRO 134 175 175 PRO PRO A . n A 1 135 LEU 135 176 176 LEU LEU A . n A 1 136 LYS 136 177 177 LYS LYS A . n A 1 137 ALA 137 178 178 ALA ALA A . n A 1 138 GLN 138 179 179 GLN GLN A . n A 1 139 GLN 139 180 ? ? ? A . n A 1 140 GLY 140 181 ? ? ? A . n A 1 141 PRO 141 182 ? ? ? A . n A 1 142 SER 142 183 ? ? ? A . n A 1 143 SER 143 184 ? ? ? A . n A 1 144 GLN 144 185 ? ? ? A . n A 1 145 GLY 145 186 ? ? ? A . n A 1 146 LYS 146 187 ? ? ? A . n B 1 1 ASP 1 33 ? ? ? B . n B 1 2 GLU 2 34 ? ? ? B . n B 1 3 PRO 3 35 35 PRO PRO B . n B 1 4 GLN 4 36 36 GLN GLN B . n B 1 5 LEU 5 37 37 LEU LEU B . n B 1 6 LEU 6 38 38 LEU LEU B . n B 1 7 HIS 7 39 39 HIS HIS B . n B 1 8 GLY 8 40 40 GLY GLY B . n B 1 9 ALA 9 41 41 ALA ALA B . n B 1 10 GLY 10 42 42 GLY GLY B . n B 1 11 ILE 11 43 43 ILE ILE B . n B 1 12 CYS 12 44 44 CYS CYS B . n B 1 13 LYS 13 45 45 LYS LYS B . n B 1 14 TRP 14 46 46 TRP TRP B . n B 1 15 PHE 15 47 47 PHE PHE B . n B 1 16 ASN 16 48 48 ASN ASN B . n B 1 17 VAL 17 49 49 VAL VAL B . n B 1 18 ARG 18 50 50 ARG ARG B . n B 1 19 MET 19 51 51 MET MET B . n B 1 20 GLY 20 52 52 GLY GLY B . n B 1 21 PHE 21 53 53 PHE PHE B . n B 1 22 GLY 22 54 54 GLY GLY B . n B 1 23 PHE 23 55 55 PHE PHE B . n B 1 24 LEU 24 56 56 LEU LEU B . n B 1 25 SER 25 57 57 SER SER B . n B 1 26 MET 26 58 58 MET MET B . n B 1 27 THR 27 59 59 THR THR B . n B 1 28 ALA 28 60 60 ALA ALA B . n B 1 29 ARG 29 61 61 ARG ARG B . n B 1 30 ALA 30 62 62 ALA ALA B . n B 1 31 GLY 31 63 63 GLY GLY B . n B 1 32 VAL 32 64 64 VAL VAL B . n B 1 33 ALA 33 65 65 ALA ALA B . n B 1 34 LEU 34 66 66 LEU LEU B . n B 1 35 ASP 35 67 67 ASP ASP B . n B 1 36 PRO 36 68 68 PRO PRO B . n B 1 37 PRO 37 69 69 PRO PRO B . n B 1 38 VAL 38 70 70 VAL VAL B . n B 1 39 ASP 39 71 71 ASP ASP B . n B 1 40 VAL 40 72 72 VAL VAL B . n B 1 41 PHE 41 73 73 PHE PHE B . n B 1 42 VAL 42 74 74 VAL VAL B . n B 1 43 HIS 43 75 75 HIS HIS B . n B 1 44 GLN 44 76 76 GLN GLN B . n B 1 45 SER 45 77 77 SER SER B . n B 1 46 LYS 46 78 78 LYS LYS B . n B 1 47 LEU 47 79 79 LEU LEU B . n B 1 48 HIS 48 80 80 HIS HIS B . n B 1 49 MET 49 81 81 MET MET B . n B 1 50 GLU 50 82 82 GLU GLU B . n B 1 51 GLY 51 83 83 GLY GLY B . n B 1 52 PHE 52 84 84 PHE PHE B . n B 1 53 ARG 53 85 85 ARG ARG B . n B 1 54 SER 54 86 86 SER SER B . n B 1 55 LEU 55 87 87 LEU LEU B . n B 1 56 LYS 56 88 88 LYS LYS B . n B 1 57 GLU 57 89 89 GLU GLU B . n B 1 58 GLY 58 90 90 GLY GLY B . n B 1 59 GLU 59 91 91 GLU GLU B . n B 1 60 ALA 60 92 92 ALA ALA B . n B 1 61 VAL 61 93 93 VAL VAL B . n B 1 62 GLU 62 94 94 GLU GLU B . n B 1 63 PHE 63 95 95 PHE PHE B . n B 1 64 THR 64 96 96 THR THR B . n B 1 65 PHE 65 97 97 PHE PHE B . n B 1 66 LYS 66 98 98 LYS LYS B . n B 1 67 LYS 67 99 99 LYS LYS B . n B 1 68 SER 68 100 100 SER SER B . n B 1 69 ALA 69 101 101 ALA ALA B . n B 1 70 LYS 70 102 102 LYS LYS B . n B 1 71 GLY 71 103 103 GLY GLY B . n B 1 72 LEU 72 104 104 LEU LEU B . n B 1 73 GLU 73 105 105 GLU GLU B . n B 1 74 SER 74 106 106 SER SER B . n B 1 75 ILE 75 107 107 ILE ILE B . n B 1 76 ARG 76 108 108 ARG ARG B . n B 1 77 VAL 77 109 109 VAL VAL B . n B 1 78 THR 78 110 110 THR THR B . n B 1 79 GLY 79 111 111 GLY GLY B . n B 1 80 PRO 80 112 112 PRO PRO B . n B 1 81 GLY 81 113 113 GLY GLY B . n B 1 82 GLY 82 114 114 GLY GLY B . n B 1 83 VAL 83 115 115 VAL VAL B . n B 1 84 PHE 84 116 116 PHE PHE B . n B 1 85 CYS 85 117 117 CYS CYS B . n B 1 86 ILE 86 118 118 ILE ILE B . n B 1 87 GLY 87 119 119 GLY GLY B . n B 1 88 SER 88 120 120 SER SER B . n B 1 89 GLU 89 121 121 GLU GLU B . n B 1 90 ARG 90 122 122 ARG ARG B . n B 1 91 ARG 91 123 123 ARG ARG B . n B 1 92 PRO 92 124 124 PRO PRO B . n B 1 93 LYS 93 125 125 LYS LYS B . n B 1 94 GLY 94 126 126 GLY GLY B . n B 1 95 GLY 95 136 136 GLY GLY B . n B 1 96 ASP 96 137 137 ASP ASP B . n B 1 97 ARG 97 138 138 ARG ARG B . n B 1 98 CYS 98 139 139 CYS CYS B . n B 1 99 TYR 99 140 140 TYR TYR B . n B 1 100 ASN 100 141 141 ASN ASN B . n B 1 101 CYS 101 142 142 CYS CYS B . n B 1 102 GLY 102 143 143 GLY GLY B . n B 1 103 GLY 103 144 144 GLY GLY B . n B 1 104 LEU 104 145 145 LEU LEU B . n B 1 105 ASP 105 146 146 ASP ASP B . n B 1 106 HIS 106 147 147 HIS HIS B . n B 1 107 HIS 107 148 148 HIS HIS B . n B 1 108 ALA 108 149 149 ALA ALA B . n B 1 109 LYS 109 150 150 LYS LYS B . n B 1 110 GLU 110 151 151 GLU GLU B . n B 1 111 CYS 111 152 152 CYS CYS B . n B 1 112 LYS 112 153 153 LYS LYS B . n B 1 113 LEU 113 154 154 LEU LEU B . n B 1 114 PRO 114 155 155 PRO PRO B . n B 1 115 PRO 115 156 156 PRO PRO B . n B 1 116 GLN 116 157 157 GLN GLN B . n B 1 117 PRO 117 158 158 PRO PRO B . n B 1 118 LYS 118 159 159 LYS LYS B . n B 1 119 LYS 119 160 160 LYS LYS B . n B 1 120 CYS 120 161 161 CYS CYS B . n B 1 121 HIS 121 162 162 HIS HIS B . n B 1 122 PHE 122 163 163 PHE PHE B . n B 1 123 CYS 123 164 164 CYS CYS B . n B 1 124 GLN 124 165 165 GLN GLN B . n B 1 125 SER 125 166 166 SER SER B . n B 1 126 ILE 126 167 167 ILE ILE B . n B 1 127 ASN 127 168 168 ASN ASN B . n B 1 128 HIS 128 169 169 HIS HIS B . n B 1 129 MET 129 170 170 MET MET B . n B 1 130 VAL 130 171 171 VAL VAL B . n B 1 131 ALA 131 172 172 ALA ALA B . n B 1 132 SER 132 173 173 SER SER B . n B 1 133 CYS 133 174 174 CYS CYS B . n B 1 134 PRO 134 175 175 PRO PRO B . n B 1 135 LEU 135 176 176 LEU LEU B . n B 1 136 LYS 136 177 177 LYS LYS B . n B 1 137 ALA 137 178 178 ALA ALA B . n B 1 138 GLN 138 179 179 GLN GLN B . n B 1 139 GLN 139 180 ? ? ? B . n B 1 140 GLY 140 181 ? ? ? B . n B 1 141 PRO 141 182 ? ? ? B . n B 1 142 SER 142 183 ? ? ? B . n B 1 143 SER 143 184 ? ? ? B . n B 1 144 GLN 144 185 ? ? ? B . n B 1 145 GLY 145 186 ? ? ? B . n B 1 146 LYS 146 187 ? ? ? B . n C 2 1 GMP 1 1 1 GMP G U . n C 2 2 G 2 2 2 G G U . n C 2 3 G 3 3 3 G G U . n C 2 4 G 4 4 4 G G U . n C 2 5 U 5 5 5 U U U . n C 2 6 A 6 6 6 A A U . n C 2 7 G 7 7 7 G G U . n C 2 8 U 8 8 8 U U U . n C 2 9 G 9 9 9 G G U . n C 2 10 A 10 10 10 A A U . n C 2 11 U 11 11 11 U U U . n C 2 12 U 12 12 12 U U U . n C 2 13 U 13 13 13 U U U . n C 2 14 U 14 14 14 U U U . n C 2 15 A 15 15 15 A A U . n C 2 16 C 16 16 16 C C U . n C 2 17 C 17 17 17 C C U . n C 2 18 C 18 18 18 C C U . n C 2 19 U 19 19 19 U U U . n C 2 20 G 20 20 20 G G U . n C 2 21 G 21 21 21 G G U . n C 2 22 A 22 22 22 A A U . n C 2 23 G 23 23 23 G G U . n D 2 1 GMP 1 1 1 GMP G V . n D 2 2 G 2 2 2 G G V . n D 2 3 G 3 3 3 G G V . n D 2 4 G 4 4 4 G G V . n D 2 5 U 5 5 5 U U V . n D 2 6 A 6 6 6 A A V . n D 2 7 G 7 7 7 G G V . n D 2 8 U 8 8 8 U U V . n D 2 9 G 9 9 9 G G V . n D 2 10 A 10 10 10 A A V . n D 2 11 U 11 11 11 U U V . n D 2 12 U 12 12 12 U U V . n D 2 13 U 13 13 13 U U V . n D 2 14 U 14 14 14 U U V . n D 2 15 A 15 15 15 A A V . n D 2 16 C 16 16 16 C C V . n D 2 17 C 17 17 17 C C V . n D 2 18 C 18 18 18 C C V . n D 2 19 U 19 19 19 U U V . n D 2 20 G 20 20 20 G G V . n D 2 21 G 21 21 21 G G V . n D 2 22 A 22 22 22 A A V . n D 2 23 G 23 23 23 G G V . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN 1 200 200 ZN ZN A . F 3 ZN 1 201 201 ZN ZN A . G 3 ZN 1 200 200 ZN ZN B . H 3 ZN 1 201 201 ZN ZN B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8250 ? 1 MORE -26 ? 1 'SSA (A^2)' 19780 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 98 ? A CYS 139 ? 1_555 ZN ? E ZN . ? A ZN 200 ? 1_555 SG ? A CYS 101 ? A CYS 142 ? 1_555 108.0 ? 2 SG ? A CYS 98 ? A CYS 139 ? 1_555 ZN ? E ZN . ? A ZN 200 ? 1_555 NE2 ? A HIS 106 ? A HIS 147 ? 1_555 107.6 ? 3 SG ? A CYS 101 ? A CYS 142 ? 1_555 ZN ? E ZN . ? A ZN 200 ? 1_555 NE2 ? A HIS 106 ? A HIS 147 ? 1_555 105.2 ? 4 SG ? A CYS 98 ? A CYS 139 ? 1_555 ZN ? E ZN . ? A ZN 200 ? 1_555 SG ? A CYS 111 ? A CYS 152 ? 1_555 110.6 ? 5 SG ? A CYS 101 ? A CYS 142 ? 1_555 ZN ? E ZN . ? A ZN 200 ? 1_555 SG ? A CYS 111 ? A CYS 152 ? 1_555 116.8 ? 6 NE2 ? A HIS 106 ? A HIS 147 ? 1_555 ZN ? E ZN . ? A ZN 200 ? 1_555 SG ? A CYS 111 ? A CYS 152 ? 1_555 108.2 ? 7 SG ? A CYS 120 ? A CYS 161 ? 1_555 ZN ? F ZN . ? A ZN 201 ? 1_555 SG ? A CYS 123 ? A CYS 164 ? 1_555 112.5 ? 8 SG ? A CYS 120 ? A CYS 161 ? 1_555 ZN ? F ZN . ? A ZN 201 ? 1_555 NE2 ? A HIS 128 ? A HIS 169 ? 1_555 109.9 ? 9 SG ? A CYS 123 ? A CYS 164 ? 1_555 ZN ? F ZN . ? A ZN 201 ? 1_555 NE2 ? A HIS 128 ? A HIS 169 ? 1_555 101.4 ? 10 SG ? A CYS 120 ? A CYS 161 ? 1_555 ZN ? F ZN . ? A ZN 201 ? 1_555 SG ? A CYS 133 ? A CYS 174 ? 1_555 111.0 ? 11 SG ? A CYS 123 ? A CYS 164 ? 1_555 ZN ? F ZN . ? A ZN 201 ? 1_555 SG ? A CYS 133 ? A CYS 174 ? 1_555 115.4 ? 12 NE2 ? A HIS 128 ? A HIS 169 ? 1_555 ZN ? F ZN . ? A ZN 201 ? 1_555 SG ? A CYS 133 ? A CYS 174 ? 1_555 106.0 ? 13 SG ? B CYS 98 ? B CYS 139 ? 1_555 ZN ? G ZN . ? B ZN 200 ? 1_555 SG ? B CYS 101 ? B CYS 142 ? 1_555 99.3 ? 14 SG ? B CYS 98 ? B CYS 139 ? 1_555 ZN ? G ZN . ? B ZN 200 ? 1_555 NE2 ? B HIS 106 ? B HIS 147 ? 1_555 101.0 ? 15 SG ? B CYS 101 ? B CYS 142 ? 1_555 ZN ? G ZN . ? B ZN 200 ? 1_555 NE2 ? B HIS 106 ? B HIS 147 ? 1_555 106.5 ? 16 SG ? B CYS 98 ? B CYS 139 ? 1_555 ZN ? G ZN . ? B ZN 200 ? 1_555 SG ? B CYS 111 ? B CYS 152 ? 1_555 111.1 ? 17 SG ? B CYS 101 ? B CYS 142 ? 1_555 ZN ? G ZN . ? B ZN 200 ? 1_555 SG ? B CYS 111 ? B CYS 152 ? 1_555 127.1 ? 18 NE2 ? B HIS 106 ? B HIS 147 ? 1_555 ZN ? G ZN . ? B ZN 200 ? 1_555 SG ? B CYS 111 ? B CYS 152 ? 1_555 108.8 ? 19 SG ? B CYS 120 ? B CYS 161 ? 1_555 ZN ? H ZN . ? B ZN 201 ? 1_555 SG ? B CYS 123 ? B CYS 164 ? 1_555 115.6 ? 20 SG ? B CYS 120 ? B CYS 161 ? 1_555 ZN ? H ZN . ? B ZN 201 ? 1_555 NE2 ? B HIS 128 ? B HIS 169 ? 1_555 105.5 ? 21 SG ? B CYS 123 ? B CYS 164 ? 1_555 ZN ? H ZN . ? B ZN 201 ? 1_555 NE2 ? B HIS 128 ? B HIS 169 ? 1_555 100.7 ? 22 SG ? B CYS 120 ? B CYS 161 ? 1_555 ZN ? H ZN . ? B ZN 201 ? 1_555 SG ? B CYS 133 ? B CYS 174 ? 1_555 108.3 ? 23 SG ? B CYS 123 ? B CYS 164 ? 1_555 ZN ? H ZN . ? B ZN 201 ? 1_555 SG ? B CYS 133 ? B CYS 174 ? 1_555 114.5 ? 24 NE2 ? B HIS 128 ? B HIS 169 ? 1_555 ZN ? H ZN . ? B ZN 201 ? 1_555 SG ? B CYS 133 ? B CYS 174 ? 1_555 111.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-11-16 2 'Structure model' 1 1 2011-11-30 3 'Structure model' 1 2 2011-12-14 4 'Structure model' 1 3 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' software 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_ref_seq_dif 9 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.value' 21 4 'Structure model' '_software.name' 22 4 'Structure model' '_struct_conn.pdbx_dist_value' 23 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_ref_seq_dif.details' 34 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 35 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 36 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -15.1657 32.2552 -12.3152 0.0384 -0.0891 0.1046 0.0761 -0.2571 -0.0726 1.2195 1.4692 3.1297 -0.7623 0.5942 -1.0890 -0.3293 0.0091 0.3202 -0.0621 0.0604 -0.1584 0.4454 -0.6005 -0.3688 'X-RAY DIFFRACTION' 2 ? refined -39.9918 64.0283 -25.0023 -0.0644 0.0050 0.0537 0.0520 0.0733 0.2555 1.0928 2.5974 3.9896 -1.1455 1.5574 -1.4871 -0.0042 -0.3738 0.3780 0.2375 0.1395 -0.0890 0.0214 0.4350 0.5943 'X-RAY DIFFRACTION' 3 ? refined -26.9206 48.9467 -5.0912 0.1210 -0.0089 -0.0928 0.2900 -0.1284 0.0207 1.6114 12.6921 0.3030 -2.7389 0.4570 -2.9075 -0.0640 -0.1679 0.2319 0.3814 0.0963 0.0237 1.0302 -0.4669 -0.0549 'X-RAY DIFFRACTION' 4 ? refined -26.6216 48.6159 -32.4273 0.1199 -0.0539 -0.0506 0.2539 -0.0115 0.1303 10.5088 3.5438 0.1417 -5.0253 2.7102 -1.2624 0.1881 -0.2996 0.1115 0.8567 0.0532 -0.2288 0.2538 0.1147 0.3788 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 35 A 179 '{ A|* }' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 35 B 179 '{ B|* }' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 U 1 U 23 '{ U|* }' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 V 1 V 23 '{ V|* }' ? ? ? ? ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 BUSTER-TNT 'BUSTER 2.11.1' ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 4 XDS . ? ? ? ? 'data reduction' ? ? ? 5 autoPROC . ? ? ? ? 'data scaling' ? ? ? 6 SCALA . ? ? ? ? 'data scaling' ? ? ? 7 PHASER . ? ? ? ? phasing ? ? ? 8 BUSTER 2.11.1 ? ? ? ? refinement ? ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O5'" U U 19 ? ? "C5'" U U 19 ? ? 1.365 1.420 -0.055 0.009 N 2 1 "O5'" V U 19 ? ? "C5'" V U 19 ? ? 1.360 1.420 -0.060 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" U U 5 ? ? "C1'" U U 5 ? ? N1 U U 5 ? ? 113.63 108.50 5.13 0.70 N 2 1 "C3'" U A 6 ? ? "O3'" U A 6 ? ? P U G 7 ? ? 126.97 119.70 7.27 1.20 Y 3 1 N1 U U 13 ? ? "C1'" U U 13 ? ? "C2'" U U 13 ? ? 121.84 114.00 7.84 1.30 N 4 1 "C5'" U U 19 ? ? "C4'" U U 19 ? ? "C3'" U U 19 ? ? 102.57 115.20 -12.63 1.40 N 5 1 "O4'" U U 19 ? ? "C1'" U U 19 ? ? N1 U U 19 ? ? 114.47 108.50 5.97 0.70 N 6 1 "O4'" V U 5 ? ? "C1'" V U 5 ? ? N1 V U 5 ? ? 113.27 108.50 4.77 0.70 N 7 1 "C3'" V A 6 ? ? "O3'" V A 6 ? ? P V G 7 ? ? 127.55 119.70 7.85 1.20 Y 8 1 "C5'" V U 19 ? ? "C4'" V U 19 ? ? "C3'" V U 19 ? ? 102.41 115.20 -12.79 1.40 N 9 1 "O4'" V U 19 ? ? "C1'" V U 19 ? ? N1 V U 19 ? ? 114.58 108.50 6.08 0.70 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 33 ? A ASP 1 2 1 Y 1 A GLU 34 ? A GLU 2 3 1 Y 1 A GLN 180 ? A GLN 139 4 1 Y 1 A GLY 181 ? A GLY 140 5 1 Y 1 A PRO 182 ? A PRO 141 6 1 Y 1 A SER 183 ? A SER 142 7 1 Y 1 A SER 184 ? A SER 143 8 1 Y 1 A GLN 185 ? A GLN 144 9 1 Y 1 A GLY 186 ? A GLY 145 10 1 Y 1 A LYS 187 ? A LYS 146 11 1 Y 1 B ASP 33 ? B ASP 1 12 1 Y 1 B GLU 34 ? B GLU 2 13 1 Y 1 B GLN 180 ? B GLN 139 14 1 Y 1 B GLY 181 ? B GLY 140 15 1 Y 1 B PRO 182 ? B PRO 141 16 1 Y 1 B SER 183 ? B SER 142 17 1 Y 1 B SER 184 ? B SER 143 18 1 Y 1 B GLN 185 ? B GLN 144 19 1 Y 1 B GLY 186 ? B GLY 145 20 1 Y 1 B LYS 187 ? B LYS 146 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 GMP "O5'" O N N 247 GMP "C5'" C N N 248 GMP "C4'" C N R 249 GMP "O4'" O N N 250 GMP "C3'" C N S 251 GMP "O3'" O N N 252 GMP "C2'" C N R 253 GMP "O2'" O N N 254 GMP "C1'" C N R 255 GMP N9 N Y N 256 GMP C8 C Y N 257 GMP N7 N Y N 258 GMP C5 C Y N 259 GMP C6 C N N 260 GMP O6 O N N 261 GMP N1 N N N 262 GMP C2 C N N 263 GMP N2 N N N 264 GMP N3 N N N 265 GMP C4 C Y N 266 GMP "HO5'" H N N 267 GMP "H5'1" H N N 268 GMP "H5'2" H N N 269 GMP "H4'" H N N 270 GMP "H3'" H N N 271 GMP "HO3'" H N N 272 GMP "H2'" H N N 273 GMP "HO2'" H N N 274 GMP "H1'" H N N 275 GMP H8 H N N 276 GMP HN1 H N N 277 GMP HN21 H N N 278 GMP HN22 H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 ILE N N N N 301 ILE CA C N S 302 ILE C C N N 303 ILE O O N N 304 ILE CB C N S 305 ILE CG1 C N N 306 ILE CG2 C N N 307 ILE CD1 C N N 308 ILE OXT O N N 309 ILE H H N N 310 ILE H2 H N N 311 ILE HA H N N 312 ILE HB H N N 313 ILE HG12 H N N 314 ILE HG13 H N N 315 ILE HG21 H N N 316 ILE HG22 H N N 317 ILE HG23 H N N 318 ILE HD11 H N N 319 ILE HD12 H N N 320 ILE HD13 H N N 321 ILE HXT H N N 322 LEU N N N N 323 LEU CA C N S 324 LEU C C N N 325 LEU O O N N 326 LEU CB C N N 327 LEU CG C N N 328 LEU CD1 C N N 329 LEU CD2 C N N 330 LEU OXT O N N 331 LEU H H N N 332 LEU H2 H N N 333 LEU HA H N N 334 LEU HB2 H N N 335 LEU HB3 H N N 336 LEU HG H N N 337 LEU HD11 H N N 338 LEU HD12 H N N 339 LEU HD13 H N N 340 LEU HD21 H N N 341 LEU HD22 H N N 342 LEU HD23 H N N 343 LEU HXT H N N 344 LYS N N N N 345 LYS CA C N S 346 LYS C C N N 347 LYS O O N N 348 LYS CB C N N 349 LYS CG C N N 350 LYS CD C N N 351 LYS CE C N N 352 LYS NZ N N N 353 LYS OXT O N N 354 LYS H H N N 355 LYS H2 H N N 356 LYS HA H N N 357 LYS HB2 H N N 358 LYS HB3 H N N 359 LYS HG2 H N N 360 LYS HG3 H N N 361 LYS HD2 H N N 362 LYS HD3 H N N 363 LYS HE2 H N N 364 LYS HE3 H N N 365 LYS HZ1 H N N 366 LYS HZ2 H N N 367 LYS HZ3 H N N 368 LYS HXT H N N 369 MET N N N N 370 MET CA C N S 371 MET C C N N 372 MET O O N N 373 MET CB C N N 374 MET CG C N N 375 MET SD S N N 376 MET CE C N N 377 MET OXT O N N 378 MET H H N N 379 MET H2 H N N 380 MET HA H N N 381 MET HB2 H N N 382 MET HB3 H N N 383 MET HG2 H N N 384 MET HG3 H N N 385 MET HE1 H N N 386 MET HE2 H N N 387 MET HE3 H N N 388 MET HXT H N N 389 PHE N N N N 390 PHE CA C N S 391 PHE C C N N 392 PHE O O N N 393 PHE CB C N N 394 PHE CG C Y N 395 PHE CD1 C Y N 396 PHE CD2 C Y N 397 PHE CE1 C Y N 398 PHE CE2 C Y N 399 PHE CZ C Y N 400 PHE OXT O N N 401 PHE H H N N 402 PHE H2 H N N 403 PHE HA H N N 404 PHE HB2 H N N 405 PHE HB3 H N N 406 PHE HD1 H N N 407 PHE HD2 H N N 408 PHE HE1 H N N 409 PHE HE2 H N N 410 PHE HZ H N N 411 PHE HXT H N N 412 PRO N N N N 413 PRO CA C N S 414 PRO C C N N 415 PRO O O N N 416 PRO CB C N N 417 PRO CG C N N 418 PRO CD C N N 419 PRO OXT O N N 420 PRO H H N N 421 PRO HA H N N 422 PRO HB2 H N N 423 PRO HB3 H N N 424 PRO HG2 H N N 425 PRO HG3 H N N 426 PRO HD2 H N N 427 PRO HD3 H N N 428 PRO HXT H N N 429 SER N N N N 430 SER CA C N S 431 SER C C N N 432 SER O O N N 433 SER CB C N N 434 SER OG O N N 435 SER OXT O N N 436 SER H H N N 437 SER H2 H N N 438 SER HA H N N 439 SER HB2 H N N 440 SER HB3 H N N 441 SER HG H N N 442 SER HXT H N N 443 THR N N N N 444 THR CA C N S 445 THR C C N N 446 THR O O N N 447 THR CB C N R 448 THR OG1 O N N 449 THR CG2 C N N 450 THR OXT O N N 451 THR H H N N 452 THR H2 H N N 453 THR HA H N N 454 THR HB H N N 455 THR HG1 H N N 456 THR HG21 H N N 457 THR HG22 H N N 458 THR HG23 H N N 459 THR HXT H N N 460 TRP N N N N 461 TRP CA C N S 462 TRP C C N N 463 TRP O O N N 464 TRP CB C N N 465 TRP CG C Y N 466 TRP CD1 C Y N 467 TRP CD2 C Y N 468 TRP NE1 N Y N 469 TRP CE2 C Y N 470 TRP CE3 C Y N 471 TRP CZ2 C Y N 472 TRP CZ3 C Y N 473 TRP CH2 C Y N 474 TRP OXT O N N 475 TRP H H N N 476 TRP H2 H N N 477 TRP HA H N N 478 TRP HB2 H N N 479 TRP HB3 H N N 480 TRP HD1 H N N 481 TRP HE1 H N N 482 TRP HE3 H N N 483 TRP HZ2 H N N 484 TRP HZ3 H N N 485 TRP HH2 H N N 486 TRP HXT H N N 487 TYR N N N N 488 TYR CA C N S 489 TYR C C N N 490 TYR O O N N 491 TYR CB C N N 492 TYR CG C Y N 493 TYR CD1 C Y N 494 TYR CD2 C Y N 495 TYR CE1 C Y N 496 TYR CE2 C Y N 497 TYR CZ C Y N 498 TYR OH O N N 499 TYR OXT O N N 500 TYR H H N N 501 TYR H2 H N N 502 TYR HA H N N 503 TYR HB2 H N N 504 TYR HB3 H N N 505 TYR HD1 H N N 506 TYR HD2 H N N 507 TYR HE1 H N N 508 TYR HE2 H N N 509 TYR HH H N N 510 TYR HXT H N N 511 U OP3 O N N 512 U P P N N 513 U OP1 O N N 514 U OP2 O N N 515 U "O5'" O N N 516 U "C5'" C N N 517 U "C4'" C N R 518 U "O4'" O N N 519 U "C3'" C N S 520 U "O3'" O N N 521 U "C2'" C N R 522 U "O2'" O N N 523 U "C1'" C N R 524 U N1 N N N 525 U C2 C N N 526 U O2 O N N 527 U N3 N N N 528 U C4 C N N 529 U O4 O N N 530 U C5 C N N 531 U C6 C N N 532 U HOP3 H N N 533 U HOP2 H N N 534 U "H5'" H N N 535 U "H5''" H N N 536 U "H4'" H N N 537 U "H3'" H N N 538 U "HO3'" H N N 539 U "H2'" H N N 540 U "HO2'" H N N 541 U "H1'" H N N 542 U H3 H N N 543 U H5 H N N 544 U H6 H N N 545 VAL N N N N 546 VAL CA C N S 547 VAL C C N N 548 VAL O O N N 549 VAL CB C N N 550 VAL CG1 C N N 551 VAL CG2 C N N 552 VAL OXT O N N 553 VAL H H N N 554 VAL H2 H N N 555 VAL HA H N N 556 VAL HB H N N 557 VAL HG11 H N N 558 VAL HG12 H N N 559 VAL HG13 H N N 560 VAL HG21 H N N 561 VAL HG22 H N N 562 VAL HG23 H N N 563 VAL HXT H N N 564 ZN ZN ZN N N 565 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 GMP "O5'" "C5'" sing N N 244 GMP "O5'" "HO5'" sing N N 245 GMP "C5'" "C4'" sing N N 246 GMP "C5'" "H5'1" sing N N 247 GMP "C5'" "H5'2" sing N N 248 GMP "C4'" "O4'" sing N N 249 GMP "C4'" "C3'" sing N N 250 GMP "C4'" "H4'" sing N N 251 GMP "O4'" "C1'" sing N N 252 GMP "C3'" "O3'" sing N N 253 GMP "C3'" "C2'" sing N N 254 GMP "C3'" "H3'" sing N N 255 GMP "O3'" "HO3'" sing N N 256 GMP "C2'" "O2'" sing N N 257 GMP "C2'" "C1'" sing N N 258 GMP "C2'" "H2'" sing N N 259 GMP "O2'" "HO2'" sing N N 260 GMP "C1'" N9 sing N N 261 GMP "C1'" "H1'" sing N N 262 GMP N9 C8 sing Y N 263 GMP N9 C4 sing Y N 264 GMP C8 N7 doub Y N 265 GMP C8 H8 sing N N 266 GMP N7 C5 sing Y N 267 GMP C5 C6 sing N N 268 GMP C5 C4 doub Y N 269 GMP C6 O6 doub N N 270 GMP C6 N1 sing N N 271 GMP N1 C2 sing N N 272 GMP N1 HN1 sing N N 273 GMP C2 N2 sing N N 274 GMP C2 N3 doub N N 275 GMP N2 HN21 sing N N 276 GMP N2 HN22 sing N N 277 GMP N3 C4 sing N N 278 HIS N CA sing N N 279 HIS N H sing N N 280 HIS N H2 sing N N 281 HIS CA C sing N N 282 HIS CA CB sing N N 283 HIS CA HA sing N N 284 HIS C O doub N N 285 HIS C OXT sing N N 286 HIS CB CG sing N N 287 HIS CB HB2 sing N N 288 HIS CB HB3 sing N N 289 HIS CG ND1 sing Y N 290 HIS CG CD2 doub Y N 291 HIS ND1 CE1 doub Y N 292 HIS ND1 HD1 sing N N 293 HIS CD2 NE2 sing Y N 294 HIS CD2 HD2 sing N N 295 HIS CE1 NE2 sing Y N 296 HIS CE1 HE1 sing N N 297 HIS NE2 HE2 sing N N 298 HIS OXT HXT sing N N 299 ILE N CA sing N N 300 ILE N H sing N N 301 ILE N H2 sing N N 302 ILE CA C sing N N 303 ILE CA CB sing N N 304 ILE CA HA sing N N 305 ILE C O doub N N 306 ILE C OXT sing N N 307 ILE CB CG1 sing N N 308 ILE CB CG2 sing N N 309 ILE CB HB sing N N 310 ILE CG1 CD1 sing N N 311 ILE CG1 HG12 sing N N 312 ILE CG1 HG13 sing N N 313 ILE CG2 HG21 sing N N 314 ILE CG2 HG22 sing N N 315 ILE CG2 HG23 sing N N 316 ILE CD1 HD11 sing N N 317 ILE CD1 HD12 sing N N 318 ILE CD1 HD13 sing N N 319 ILE OXT HXT sing N N 320 LEU N CA sing N N 321 LEU N H sing N N 322 LEU N H2 sing N N 323 LEU CA C sing N N 324 LEU CA CB sing N N 325 LEU CA HA sing N N 326 LEU C O doub N N 327 LEU C OXT sing N N 328 LEU CB CG sing N N 329 LEU CB HB2 sing N N 330 LEU CB HB3 sing N N 331 LEU CG CD1 sing N N 332 LEU CG CD2 sing N N 333 LEU CG HG sing N N 334 LEU CD1 HD11 sing N N 335 LEU CD1 HD12 sing N N 336 LEU CD1 HD13 sing N N 337 LEU CD2 HD21 sing N N 338 LEU CD2 HD22 sing N N 339 LEU CD2 HD23 sing N N 340 LEU OXT HXT sing N N 341 LYS N CA sing N N 342 LYS N H sing N N 343 LYS N H2 sing N N 344 LYS CA C sing N N 345 LYS CA CB sing N N 346 LYS CA HA sing N N 347 LYS C O doub N N 348 LYS C OXT sing N N 349 LYS CB CG sing N N 350 LYS CB HB2 sing N N 351 LYS CB HB3 sing N N 352 LYS CG CD sing N N 353 LYS CG HG2 sing N N 354 LYS CG HG3 sing N N 355 LYS CD CE sing N N 356 LYS CD HD2 sing N N 357 LYS CD HD3 sing N N 358 LYS CE NZ sing N N 359 LYS CE HE2 sing N N 360 LYS CE HE3 sing N N 361 LYS NZ HZ1 sing N N 362 LYS NZ HZ2 sing N N 363 LYS NZ HZ3 sing N N 364 LYS OXT HXT sing N N 365 MET N CA sing N N 366 MET N H sing N N 367 MET N H2 sing N N 368 MET CA C sing N N 369 MET CA CB sing N N 370 MET CA HA sing N N 371 MET C O doub N N 372 MET C OXT sing N N 373 MET CB CG sing N N 374 MET CB HB2 sing N N 375 MET CB HB3 sing N N 376 MET CG SD sing N N 377 MET CG HG2 sing N N 378 MET CG HG3 sing N N 379 MET SD CE sing N N 380 MET CE HE1 sing N N 381 MET CE HE2 sing N N 382 MET CE HE3 sing N N 383 MET OXT HXT sing N N 384 PHE N CA sing N N 385 PHE N H sing N N 386 PHE N H2 sing N N 387 PHE CA C sing N N 388 PHE CA CB sing N N 389 PHE CA HA sing N N 390 PHE C O doub N N 391 PHE C OXT sing N N 392 PHE CB CG sing N N 393 PHE CB HB2 sing N N 394 PHE CB HB3 sing N N 395 PHE CG CD1 doub Y N 396 PHE CG CD2 sing Y N 397 PHE CD1 CE1 sing Y N 398 PHE CD1 HD1 sing N N 399 PHE CD2 CE2 doub Y N 400 PHE CD2 HD2 sing N N 401 PHE CE1 CZ doub Y N 402 PHE CE1 HE1 sing N N 403 PHE CE2 CZ sing Y N 404 PHE CE2 HE2 sing N N 405 PHE CZ HZ sing N N 406 PHE OXT HXT sing N N 407 PRO N CA sing N N 408 PRO N CD sing N N 409 PRO N H sing N N 410 PRO CA C sing N N 411 PRO CA CB sing N N 412 PRO CA HA sing N N 413 PRO C O doub N N 414 PRO C OXT sing N N 415 PRO CB CG sing N N 416 PRO CB HB2 sing N N 417 PRO CB HB3 sing N N 418 PRO CG CD sing N N 419 PRO CG HG2 sing N N 420 PRO CG HG3 sing N N 421 PRO CD HD2 sing N N 422 PRO CD HD3 sing N N 423 PRO OXT HXT sing N N 424 SER N CA sing N N 425 SER N H sing N N 426 SER N H2 sing N N 427 SER CA C sing N N 428 SER CA CB sing N N 429 SER CA HA sing N N 430 SER C O doub N N 431 SER C OXT sing N N 432 SER CB OG sing N N 433 SER CB HB2 sing N N 434 SER CB HB3 sing N N 435 SER OG HG sing N N 436 SER OXT HXT sing N N 437 THR N CA sing N N 438 THR N H sing N N 439 THR N H2 sing N N 440 THR CA C sing N N 441 THR CA CB sing N N 442 THR CA HA sing N N 443 THR C O doub N N 444 THR C OXT sing N N 445 THR CB OG1 sing N N 446 THR CB CG2 sing N N 447 THR CB HB sing N N 448 THR OG1 HG1 sing N N 449 THR CG2 HG21 sing N N 450 THR CG2 HG22 sing N N 451 THR CG2 HG23 sing N N 452 THR OXT HXT sing N N 453 TRP N CA sing N N 454 TRP N H sing N N 455 TRP N H2 sing N N 456 TRP CA C sing N N 457 TRP CA CB sing N N 458 TRP CA HA sing N N 459 TRP C O doub N N 460 TRP C OXT sing N N 461 TRP CB CG sing N N 462 TRP CB HB2 sing N N 463 TRP CB HB3 sing N N 464 TRP CG CD1 doub Y N 465 TRP CG CD2 sing Y N 466 TRP CD1 NE1 sing Y N 467 TRP CD1 HD1 sing N N 468 TRP CD2 CE2 doub Y N 469 TRP CD2 CE3 sing Y N 470 TRP NE1 CE2 sing Y N 471 TRP NE1 HE1 sing N N 472 TRP CE2 CZ2 sing Y N 473 TRP CE3 CZ3 doub Y N 474 TRP CE3 HE3 sing N N 475 TRP CZ2 CH2 doub Y N 476 TRP CZ2 HZ2 sing N N 477 TRP CZ3 CH2 sing Y N 478 TRP CZ3 HZ3 sing N N 479 TRP CH2 HH2 sing N N 480 TRP OXT HXT sing N N 481 TYR N CA sing N N 482 TYR N H sing N N 483 TYR N H2 sing N N 484 TYR CA C sing N N 485 TYR CA CB sing N N 486 TYR CA HA sing N N 487 TYR C O doub N N 488 TYR C OXT sing N N 489 TYR CB CG sing N N 490 TYR CB HB2 sing N N 491 TYR CB HB3 sing N N 492 TYR CG CD1 doub Y N 493 TYR CG CD2 sing Y N 494 TYR CD1 CE1 sing Y N 495 TYR CD1 HD1 sing N N 496 TYR CD2 CE2 doub Y N 497 TYR CD2 HD2 sing N N 498 TYR CE1 CZ doub Y N 499 TYR CE1 HE1 sing N N 500 TYR CE2 CZ sing Y N 501 TYR CE2 HE2 sing N N 502 TYR CZ OH sing N N 503 TYR OH HH sing N N 504 TYR OXT HXT sing N N 505 U OP3 P sing N N 506 U OP3 HOP3 sing N N 507 U P OP1 doub N N 508 U P OP2 sing N N 509 U P "O5'" sing N N 510 U OP2 HOP2 sing N N 511 U "O5'" "C5'" sing N N 512 U "C5'" "C4'" sing N N 513 U "C5'" "H5'" sing N N 514 U "C5'" "H5''" sing N N 515 U "C4'" "O4'" sing N N 516 U "C4'" "C3'" sing N N 517 U "C4'" "H4'" sing N N 518 U "O4'" "C1'" sing N N 519 U "C3'" "O3'" sing N N 520 U "C3'" "C2'" sing N N 521 U "C3'" "H3'" sing N N 522 U "O3'" "HO3'" sing N N 523 U "C2'" "O2'" sing N N 524 U "C2'" "C1'" sing N N 525 U "C2'" "H2'" sing N N 526 U "O2'" "HO2'" sing N N 527 U "C1'" N1 sing N N 528 U "C1'" "H1'" sing N N 529 U N1 C2 sing N N 530 U N1 C6 sing N N 531 U C2 O2 doub N N 532 U C2 N3 sing N N 533 U N3 C4 sing N N 534 U N3 H3 sing N N 535 U C4 O4 doub N N 536 U C4 C5 sing N N 537 U C5 C6 doub N N 538 U C5 H5 sing N N 539 U C6 H6 sing N N 540 VAL N CA sing N N 541 VAL N H sing N N 542 VAL N H2 sing N N 543 VAL CA C sing N N 544 VAL CA CB sing N N 545 VAL CA HA sing N N 546 VAL C O doub N N 547 VAL C OXT sing N N 548 VAL CB CG1 sing N N 549 VAL CB CG2 sing N N 550 VAL CB HB sing N N 551 VAL CG1 HG11 sing N N 552 VAL CG1 HG12 sing N N 553 VAL CG1 HG13 sing N N 554 VAL CG2 HG21 sing N N 555 VAL CG2 HG22 sing N N 556 VAL CG2 HG23 sing N N 557 VAL OXT HXT sing N N 558 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3TS0 'double helix' 3TS0 'a-form double helix' 3TS0 'hairpin loop' 3TS0 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C G 2 1_555 C C 18 1_555 -0.488 -0.069 0.017 -1.513 -10.878 2.911 1 U_G2:C18_U U 2 ? U 18 ? 19 1 1 C G 3 1_555 C C 17 1_555 -0.551 -0.251 -0.044 -7.783 -9.188 1.388 2 U_G3:C17_U U 3 ? U 17 ? 19 1 1 C G 4 1_555 C C 16 1_555 -0.210 -0.252 -0.001 -6.975 -10.750 0.202 3 U_G4:C16_U U 4 ? U 16 ? 19 1 1 C U 5 1_555 C A 15 1_555 -0.407 -0.327 0.068 1.107 -9.648 -3.056 4 U_U5:A15_U U 5 ? U 15 ? 20 1 1 C A 6 1_555 C U 14 1_555 0.413 -0.003 0.043 9.800 8.111 5.749 5 U_A6:U14_U U 6 ? U 14 ? 20 1 1 D G 2 1_555 D C 18 1_555 -0.477 -0.052 -0.003 -1.958 -10.662 3.215 6 V_G2:C18_V V 2 ? V 18 ? 19 1 1 D G 3 1_555 D C 17 1_555 -0.546 -0.236 -0.026 -7.435 -9.313 1.860 7 V_G3:C17_V V 3 ? V 17 ? 19 1 1 D G 4 1_555 D C 16 1_555 -0.206 -0.250 0.012 -6.926 -11.419 0.660 8 V_G4:C16_V V 4 ? V 16 ? 19 1 1 D U 5 1_555 D A 15 1_555 -0.398 -0.332 0.062 0.407 -9.647 -3.138 9 V_U5:A15_V V 5 ? V 15 ? 20 1 1 D A 6 1_555 D U 14 1_555 0.422 -0.018 -0.009 7.618 8.044 4.696 10 V_A6:U14_V V 6 ? V 14 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C G 2 1_555 C C 18 1_555 C G 3 1_555 C C 17 1_555 0.543 -2.017 3.352 1.615 6.834 29.120 -5.260 -0.730 2.841 13.348 -3.154 29.937 1 UU_G2G3:C17C18_UU U 2 ? U 18 ? U 3 ? U 17 ? 1 C G 3 1_555 C C 17 1_555 C G 4 1_555 C C 16 1_555 -0.184 -2.101 3.291 0.420 2.696 29.603 -4.648 0.445 3.088 5.263 -0.820 29.726 2 UU_G3G4:C16C17_UU U 3 ? U 17 ? U 4 ? U 16 ? 1 C G 4 1_555 C C 16 1_555 C U 5 1_555 C A 15 1_555 -0.531 -1.581 3.121 -1.833 -0.316 27.840 -3.207 0.681 3.167 -0.656 3.805 27.901 3 UU_G4U5:A15C16_UU U 4 ? U 16 ? U 5 ? U 15 ? 1 C U 5 1_555 C A 15 1_555 C A 6 1_555 C U 14 1_555 0.697 -0.980 3.060 1.433 3.845 36.618 -2.032 -0.924 2.969 6.096 -2.273 36.839 4 UU_U5A6:U14A15_UU U 5 ? U 15 ? U 6 ? U 14 ? 1 D G 2 1_555 D C 18 1_555 D G 3 1_555 D C 17 1_555 0.532 -2.024 3.331 1.260 6.656 28.872 -5.295 -0.787 2.824 13.121 -2.483 29.640 5 VV_G2G3:C17C18_VV V 2 ? V 18 ? V 3 ? V 17 ? 1 D G 3 1_555 D C 17 1_555 D G 4 1_555 D C 16 1_555 -0.208 -2.099 3.284 0.325 3.294 29.495 -4.770 0.471 3.035 6.444 -0.636 29.676 6 VV_G3G4:C16C17_VV V 3 ? V 17 ? V 4 ? V 16 ? 1 D G 4 1_555 D C 16 1_555 D U 5 1_555 D A 15 1_555 -0.556 -1.561 3.137 -1.611 0.101 28.052 -3.239 0.780 3.158 0.208 3.320 28.098 7 VV_G4U5:A15C16_VV V 4 ? V 16 ? V 5 ? V 15 ? 1 D U 5 1_555 D A 15 1_555 D A 6 1_555 D U 14 1_555 0.681 -0.962 3.104 2.172 4.369 36.718 -2.065 -0.798 3.008 6.898 -3.429 37.030 8 VV_U5A6:U14A15_VV V 5 ? V 15 ? V 6 ? V 14 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3TRZ _pdbx_initial_refinement_model.details 'PDB ENTRY 3TRZ' #