HEADER RNA BINDING PROTEIN/RNA 11-SEP-11 3TS0 TITLE MOUSE LIN28A IN COMPLEX WITH LET-7F-1 MICRORNA PRE-ELEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN LIN-28 HOMOLOG A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LIN-28A, TESTIS-EXPRESSED PROTEIN 17; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'- COMPND 8 R(*GP*GP*GP*GP*UP*AP*GP*UP*GP*AP*UP*UP*UP*UP*AP*CP*CP*CP*UP*GP*GP*AP* COMPND 9 G)-3'); COMPND 10 CHAIN: U, V; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: PREE-LET-7F-1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: LIN28, LIN28A, TEX17; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: RNA OLIGONUCLEOTIDE KEYWDS MICRORNA BIOGENESIS, PROTEIN-RNA COMPLEX, PRE-ELEMENT, CCHC ZINC KEYWDS 2 KNUCKLE, COLD SHOCK DOMAIN, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAM,P.SLIZ REVDAT 4 13-SEP-23 3TS0 1 REMARK SEQADV LINK REVDAT 3 14-DEC-11 3TS0 1 JRNL REVDAT 2 30-NOV-11 3TS0 1 JRNL REVDAT 1 16-NOV-11 3TS0 0 JRNL AUTH Y.NAM,C.CHEN,R.I.GREGORY,J.J.CHOU,P.SLIZ JRNL TITL MOLECULAR BASIS FOR INTERACTION OF LET-7 MICRORNAS WITH JRNL TITL 2 LIN28. JRNL REF CELL(CAMBRIDGE,MASS.) V. 147 1080 2011 JRNL REFN ISSN 0092-8674 JRNL PMID 22078496 JRNL DOI 10.1016/J.CELL.2011.10.020 REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.11.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 22279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1148 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.90 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2838 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2319 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2666 REMARK 3 BIN R VALUE (WORKING SET) : 0.2311 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.06 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 172 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2080 REMARK 3 NUCLEIC ACID ATOMS : 984 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 78.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.447 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.292 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.907 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3234 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4574 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1286 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 38 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 366 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3234 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 3 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 438 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3197 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.36 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -15.1657 32.2552 -12.3152 REMARK 3 T TENSOR REMARK 3 T11: 0.0384 T22: -0.0891 REMARK 3 T33: 0.1046 T12: 0.0761 REMARK 3 T13: -0.2571 T23: -0.0726 REMARK 3 L TENSOR REMARK 3 L11: 1.2195 L22: 1.4692 REMARK 3 L33: 3.1297 L12: -0.7623 REMARK 3 L13: 0.5942 L23: -1.0890 REMARK 3 S TENSOR REMARK 3 S11: -0.3293 S12: -0.0621 S13: 0.0604 REMARK 3 S21: 0.4454 S22: 0.0091 S23: -0.1584 REMARK 3 S31: -0.6005 S32: -0.3688 S33: 0.3202 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -39.9918 64.0283 -25.0023 REMARK 3 T TENSOR REMARK 3 T11: -0.0644 T22: 0.0050 REMARK 3 T33: 0.0537 T12: 0.0520 REMARK 3 T13: 0.0733 T23: 0.2555 REMARK 3 L TENSOR REMARK 3 L11: 1.0928 L22: 2.5974 REMARK 3 L33: 3.9896 L12: -1.1455 REMARK 3 L13: 1.5574 L23: -1.4871 REMARK 3 S TENSOR REMARK 3 S11: -0.0042 S12: 0.2375 S13: 0.1395 REMARK 3 S21: 0.0214 S22: -0.3738 S23: -0.0890 REMARK 3 S31: 0.4350 S32: 0.5943 S33: 0.3780 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { U|* } REMARK 3 ORIGIN FOR THE GROUP (A): -26.9206 48.9467 -5.0912 REMARK 3 T TENSOR REMARK 3 T11: 0.1210 T22: -0.0089 REMARK 3 T33: -0.0928 T12: 0.2900 REMARK 3 T13: -0.1284 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 1.6114 L22: 12.6921 REMARK 3 L33: 0.3030 L12: -2.7389 REMARK 3 L13: 0.4570 L23: -2.9075 REMARK 3 S TENSOR REMARK 3 S11: -0.0640 S12: 0.3814 S13: 0.0963 REMARK 3 S21: 1.0302 S22: -0.1679 S23: 0.0237 REMARK 3 S31: -0.4669 S32: -0.0549 S33: 0.2319 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { V|* } REMARK 3 ORIGIN FOR THE GROUP (A): -26.6216 48.6159 -32.4273 REMARK 3 T TENSOR REMARK 3 T11: 0.1199 T22: -0.0539 REMARK 3 T33: -0.0506 T12: 0.2539 REMARK 3 T13: -0.0115 T23: 0.1303 REMARK 3 L TENSOR REMARK 3 L11: 10.5088 L22: 3.5438 REMARK 3 L33: 0.1417 L12: -5.0253 REMARK 3 L13: 2.7102 L23: -1.2624 REMARK 3 S TENSOR REMARK 3 S11: 0.1881 S12: 0.8567 S13: 0.0532 REMARK 3 S21: 0.2538 S22: -0.2996 S23: -0.2288 REMARK 3 S31: 0.1147 S32: 0.3788 S33: 0.1115 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TS0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979500 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22328 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.763 REMARK 200 RESOLUTION RANGE LOW (A) : 72.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 28.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.62900 REMARK 200 R SYM FOR SHELL (I) : 0.62900 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3TRZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6M NAH2PO4, 1.4M K2HPO4, PH 7, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.77500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 69.94000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 69.94000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.38750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 69.94000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 69.94000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.16250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 69.94000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.94000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.38750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 69.94000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.94000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.16250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.77500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: IN THE CRYSTAL FORMS, THE AUTHORS OBSERVE A DOMAIN SWAP IN REMARK 300 WHICH THE LIN28 CSD INTERACTS WITH THE LOOP OF ONE MICRORNA REMARK 300 MOLECULE, AND THE CCHCX2 INTERACTS WITH THE GGAG OF A SECOND REMARK 300 MICRORNA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, U, V REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 33 REMARK 465 GLU A 34 REMARK 465 GLN A 180 REMARK 465 GLY A 181 REMARK 465 PRO A 182 REMARK 465 SER A 183 REMARK 465 SER A 184 REMARK 465 GLN A 185 REMARK 465 GLY A 186 REMARK 465 LYS A 187 REMARK 465 ASP B 33 REMARK 465 GLU B 34 REMARK 465 GLN B 180 REMARK 465 GLY B 181 REMARK 465 PRO B 182 REMARK 465 SER B 183 REMARK 465 SER B 184 REMARK 465 GLN B 185 REMARK 465 GLY B 186 REMARK 465 LYS B 187 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U U 19 O5' U U 19 C5' -0.055 REMARK 500 U V 19 O5' U V 19 C5' -0.060 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U U 5 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 A U 6 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 U U 13 N1 - C1' - C2' ANGL. DEV. = 7.8 DEGREES REMARK 500 U U 19 C5' - C4' - C3' ANGL. DEV. = -12.6 DEGREES REMARK 500 U U 19 O4' - C1' - N1 ANGL. DEV. = 6.0 DEGREES REMARK 500 U V 5 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 A V 6 C3' - O3' - P ANGL. DEV. = 7.8 DEGREES REMARK 500 U V 19 C5' - C4' - C3' ANGL. DEV. = -12.8 DEGREES REMARK 500 U V 19 O4' - C1' - N1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 139 SG REMARK 620 2 CYS A 142 SG 108.0 REMARK 620 3 HIS A 147 NE2 107.6 105.2 REMARK 620 4 CYS A 152 SG 110.6 116.8 108.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 161 SG REMARK 620 2 CYS A 164 SG 112.5 REMARK 620 3 HIS A 169 NE2 109.9 101.4 REMARK 620 4 CYS A 174 SG 111.0 115.4 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 139 SG REMARK 620 2 CYS B 142 SG 99.3 REMARK 620 3 HIS B 147 NE2 101.0 106.5 REMARK 620 4 CYS B 152 SG 111.1 127.1 108.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 161 SG REMARK 620 2 CYS B 164 SG 115.6 REMARK 620 3 HIS B 169 NE2 105.5 100.7 REMARK 620 4 CYS B 174 SG 108.3 114.5 111.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 201 DBREF 3TS0 A 33 187 UNP Q8K3Y3 LN28A_MOUSE 33 187 DBREF 3TS0 B 33 187 UNP Q8K3Y3 LN28A_MOUSE 33 187 DBREF 3TS0 U 1 23 PDB 3TS0 3TS0 1 23 DBREF 3TS0 V 1 23 PDB 3TS0 3TS0 1 23 SEQADV 3TS0 A UNP Q8K3Y3 LYS 127 DELETION SEQADV 3TS0 A UNP Q8K3Y3 ASN 128 DELETION SEQADV 3TS0 A UNP Q8K3Y3 MET 129 DELETION SEQADV 3TS0 A UNP Q8K3Y3 GLN 130 DELETION SEQADV 3TS0 A UNP Q8K3Y3 LYS 131 DELETION SEQADV 3TS0 A UNP Q8K3Y3 ARG 132 DELETION SEQADV 3TS0 A UNP Q8K3Y3 ARG 133 DELETION SEQADV 3TS0 A UNP Q8K3Y3 SER 134 DELETION SEQADV 3TS0 A UNP Q8K3Y3 LYS 135 DELETION SEQADV 3TS0 B UNP Q8K3Y3 LYS 127 DELETION SEQADV 3TS0 B UNP Q8K3Y3 ASN 128 DELETION SEQADV 3TS0 B UNP Q8K3Y3 MET 129 DELETION SEQADV 3TS0 B UNP Q8K3Y3 GLN 130 DELETION SEQADV 3TS0 B UNP Q8K3Y3 LYS 131 DELETION SEQADV 3TS0 B UNP Q8K3Y3 ARG 132 DELETION SEQADV 3TS0 B UNP Q8K3Y3 ARG 133 DELETION SEQADV 3TS0 B UNP Q8K3Y3 SER 134 DELETION SEQADV 3TS0 B UNP Q8K3Y3 LYS 135 DELETION SEQRES 1 A 146 ASP GLU PRO GLN LEU LEU HIS GLY ALA GLY ILE CYS LYS SEQRES 2 A 146 TRP PHE ASN VAL ARG MET GLY PHE GLY PHE LEU SER MET SEQRES 3 A 146 THR ALA ARG ALA GLY VAL ALA LEU ASP PRO PRO VAL ASP SEQRES 4 A 146 VAL PHE VAL HIS GLN SER LYS LEU HIS MET GLU GLY PHE SEQRES 5 A 146 ARG SER LEU LYS GLU GLY GLU ALA VAL GLU PHE THR PHE SEQRES 6 A 146 LYS LYS SER ALA LYS GLY LEU GLU SER ILE ARG VAL THR SEQRES 7 A 146 GLY PRO GLY GLY VAL PHE CYS ILE GLY SER GLU ARG ARG SEQRES 8 A 146 PRO LYS GLY GLY ASP ARG CYS TYR ASN CYS GLY GLY LEU SEQRES 9 A 146 ASP HIS HIS ALA LYS GLU CYS LYS LEU PRO PRO GLN PRO SEQRES 10 A 146 LYS LYS CYS HIS PHE CYS GLN SER ILE ASN HIS MET VAL SEQRES 11 A 146 ALA SER CYS PRO LEU LYS ALA GLN GLN GLY PRO SER SER SEQRES 12 A 146 GLN GLY LYS SEQRES 1 B 146 ASP GLU PRO GLN LEU LEU HIS GLY ALA GLY ILE CYS LYS SEQRES 2 B 146 TRP PHE ASN VAL ARG MET GLY PHE GLY PHE LEU SER MET SEQRES 3 B 146 THR ALA ARG ALA GLY VAL ALA LEU ASP PRO PRO VAL ASP SEQRES 4 B 146 VAL PHE VAL HIS GLN SER LYS LEU HIS MET GLU GLY PHE SEQRES 5 B 146 ARG SER LEU LYS GLU GLY GLU ALA VAL GLU PHE THR PHE SEQRES 6 B 146 LYS LYS SER ALA LYS GLY LEU GLU SER ILE ARG VAL THR SEQRES 7 B 146 GLY PRO GLY GLY VAL PHE CYS ILE GLY SER GLU ARG ARG SEQRES 8 B 146 PRO LYS GLY GLY ASP ARG CYS TYR ASN CYS GLY GLY LEU SEQRES 9 B 146 ASP HIS HIS ALA LYS GLU CYS LYS LEU PRO PRO GLN PRO SEQRES 10 B 146 LYS LYS CYS HIS PHE CYS GLN SER ILE ASN HIS MET VAL SEQRES 11 B 146 ALA SER CYS PRO LEU LYS ALA GLN GLN GLY PRO SER SER SEQRES 12 B 146 GLN GLY LYS SEQRES 1 U 23 GMP G G G U A G U G A U U U SEQRES 2 U 23 U A C C C U G G A G SEQRES 1 V 23 GMP G G G U A G U G A U U U SEQRES 2 V 23 U A C C C U G G A G HET GMP U 1 20 HET GMP V 1 20 HET ZN A 200 1 HET ZN A 201 1 HET ZN B 200 1 HET ZN B 201 1 HETNAM GMP GUANOSINE HETNAM ZN ZINC ION FORMUL 3 GMP 2(C10 H13 N5 O5) FORMUL 5 ZN 4(ZN 2+) HELIX 1 1 SER A 77 LEU A 79 5 3 HELIX 2 2 GLY A 111 VAL A 115 5 5 HELIX 3 3 MET A 170 CYS A 174 5 5 HELIX 4 4 SER B 77 LEU B 79 5 3 HELIX 5 5 GLY B 111 VAL B 115 5 5 HELIX 6 6 MET B 170 CYS B 174 5 5 SHEET 1 A 6 LEU A 38 ASN A 48 0 SHEET 2 A 6 PHE A 53 ARG A 61 -1 O SER A 57 N ILE A 43 SHEET 3 A 6 VAL A 64 HIS A 75 -1 O LEU A 66 N THR A 59 SHEET 4 A 6 GLY A 103 THR A 110 1 O SER A 106 N PHE A 73 SHEET 5 A 6 ALA A 92 SER A 100 -1 N SER A 100 O GLY A 103 SHEET 6 A 6 LEU A 38 ASN A 48 -1 N LEU A 38 O PHE A 97 SHEET 1 B 6 LEU B 38 ASN B 48 0 SHEET 2 B 6 PHE B 53 ARG B 61 -1 O SER B 57 N ILE B 43 SHEET 3 B 6 VAL B 64 HIS B 75 -1 O VAL B 72 N LEU B 56 SHEET 4 B 6 GLY B 103 THR B 110 1 O LEU B 104 N PHE B 73 SHEET 5 B 6 ALA B 92 SER B 100 -1 N SER B 100 O GLY B 103 SHEET 6 B 6 LEU B 38 ASN B 48 -1 N LEU B 38 O PHE B 97 LINK SG CYS A 139 ZN ZN A 200 1555 1555 2.40 LINK SG CYS A 142 ZN ZN A 200 1555 1555 2.17 LINK NE2 HIS A 147 ZN ZN A 200 1555 1555 2.45 LINK SG CYS A 152 ZN ZN A 200 1555 1555 2.15 LINK SG CYS A 161 ZN ZN A 201 1555 1555 2.34 LINK SG CYS A 164 ZN ZN A 201 1555 1555 2.25 LINK NE2 HIS A 169 ZN ZN A 201 1555 1555 1.93 LINK SG CYS A 174 ZN ZN A 201 1555 1555 2.30 LINK SG CYS B 139 ZN ZN B 200 1555 1555 2.45 LINK SG CYS B 142 ZN ZN B 200 1555 1555 2.31 LINK NE2 HIS B 147 ZN ZN B 200 1555 1555 2.43 LINK SG CYS B 152 ZN ZN B 200 1555 1555 2.19 LINK SG CYS B 161 ZN ZN B 201 1555 1555 2.33 LINK SG CYS B 164 ZN ZN B 201 1555 1555 2.27 LINK NE2 HIS B 169 ZN ZN B 201 1555 1555 1.95 LINK SG CYS B 174 ZN ZN B 201 1555 1555 2.29 CISPEP 1 ASP A 67 PRO A 68 0 5.24 CISPEP 2 ASP B 67 PRO B 68 0 5.02 SITE 1 AC1 4 CYS A 139 CYS A 142 HIS A 147 CYS A 152 SITE 1 AC2 4 CYS A 161 CYS A 164 HIS A 169 CYS A 174 SITE 1 AC3 4 CYS B 139 CYS B 142 HIS B 147 CYS B 152 SITE 1 AC4 4 CYS B 161 CYS B 164 HIS B 169 CYS B 174 CRYST1 139.880 139.880 85.550 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007149 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007149 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011689 0.00000