HEADER ISOMERASE/ISOMERASE INHIBITOR 15-SEP-11 3TTZ TITLE CRYSTAL STRUCTURE OF A TOPOISOMERASE ATPASE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ATPASE DOMAIN WITH LOOP DELETION, UNP RESIDUES 14-104 AND COMPND 5 128-233; COMPND 6 EC: 5.99.1.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: GYRB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT73.3 KEYWDS PROTEIN-INHIBITOR COMPLEX, ATP-BINDING, STRUCTURE-BASED DRUG DESIGN, KEYWDS 2 ANTIMICROBIAL, ISOMERASE-ISOMERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.A.BORIACK-SJODIN,J.READ,A.E.EAKIN,B.A.SHERER REVDAT 4 28-FEB-24 3TTZ 1 REMARK SEQADV LINK REVDAT 3 09-AUG-17 3TTZ 1 SOURCE REMARK REVDAT 2 07-DEC-11 3TTZ 1 JRNL REVDAT 1 16-NOV-11 3TTZ 0 JRNL AUTH B.A.SHERER,K.HULL,O.GREEN,G.BASARAB,S.HAUCK,P.HILL,J.T.LOCH, JRNL AUTH 2 G.MULLEN,S.BIST,J.BRYANT,A.BORIACK-SJODIN,J.READ,N.DEGRACE, JRNL AUTH 3 M.URIA-NICKELSEN,R.N.ILLINGWORTH,A.E.EAKIN JRNL TITL PYRROLAMIDE DNA GYRASE INHIBITORS: OPTIMIZATION OF JRNL TITL 2 ANTIBACTERIAL ACTIVITY AND EFFICACY. JRNL REF BIOORG.MED.CHEM.LETT. V. 21 7416 2011 JRNL REFN ISSN 0960-894X JRNL PMID 22041057 JRNL DOI 10.1016/J.BMCL.2011.10.010 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 44463 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2246 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2516 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.2040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3058 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 395 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.298 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3223 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2117 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4382 ; 0.894 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5164 ; 0.724 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 390 ; 4.847 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;38.510 ;24.765 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 561 ;10.780 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;13.222 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 485 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3640 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 636 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1914 ; 0.287 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 790 ; 0.047 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3118 ; 0.588 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1309 ; 1.113 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1264 ; 1.947 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 14 A 230 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1980 12.0080 19.9980 REMARK 3 T TENSOR REMARK 3 T11: 0.0068 T22: 0.0221 REMARK 3 T33: 0.0225 T12: -0.0035 REMARK 3 T13: 0.0090 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.4033 L22: 0.3643 REMARK 3 L33: 0.4791 L12: 0.0048 REMARK 3 L13: 0.1360 L23: -0.0426 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: 0.0343 S13: 0.0193 REMARK 3 S21: 0.0058 S22: -0.0297 S23: 0.0331 REMARK 3 S31: -0.0041 S32: 0.0495 S33: 0.0401 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 230 REMARK 3 ORIGIN FOR THE GROUP (A): 25.9930 -12.3170 2.7610 REMARK 3 T TENSOR REMARK 3 T11: 0.0101 T22: 0.0148 REMARK 3 T33: 0.0260 T12: -0.0054 REMARK 3 T13: -0.0083 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.6239 L22: 0.6162 REMARK 3 L33: 0.5165 L12: 0.0610 REMARK 3 L13: 0.0580 L23: 0.0854 REMARK 3 S TENSOR REMARK 3 S11: -0.0504 S12: 0.0302 S13: 0.0440 REMARK 3 S21: -0.0449 S22: -0.0081 S23: 0.0997 REMARK 3 S31: -0.0223 S32: 0.0450 S33: 0.0585 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TTZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000067916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44473 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 51.739 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.02700 REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.16700 REMARK 200 R SYM FOR SHELL (I) : 0.16700 REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19-30% PEG3350, 0.1MHEPES, PH 7.5, REMARK 280 0.2M MGCL2, INHIBITOR SOAK, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.58900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.81450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.58900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.81450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: WHEN TRUNCATED, THIS PROTEIN IS A MONOMER, THERE ARE 2 REMARK 300 MONOMERS IN THE ASYMMETRIC UNIT. NATIVE PROTEIN IS HETEROTETRAMER REMARK 300 WITH GYRA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 13 REMARK 465 GLY A 231 REMARK 465 GLY A 232 REMARK 465 ILE A 233 REMARK 465 MET B 13 REMARK 465 TYR B 14 REMARK 465 GLY B 15 REMARK 465 ALA B 16 REMARK 465 GLY B 17 REMARK 465 GLN B 18 REMARK 465 ILE B 19 REMARK 465 GLU B 92 REMARK 465 LYS B 93 REMARK 465 MET B 94 REMARK 465 GLY B 231 REMARK 465 GLY B 232 REMARK 465 ILE B 233 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 40 -169.67 -78.23 REMARK 500 ASN A 206 77.65 -113.85 REMARK 500 HIS A 228 95.01 -161.33 REMARK 500 HIS B 228 84.24 -154.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 234 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 11 O REMARK 620 2 HOH A 127 O 73.0 REMARK 620 3 HOH A 239 O 91.8 88.1 REMARK 620 4 HOH A 374 O 95.5 96.2 172.3 REMARK 620 5 HOH A 415 O 100.8 173.8 92.7 83.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 235 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 208 O REMARK 620 2 HOH A 324 O 92.6 REMARK 620 3 HOH A 327 O 80.4 94.0 REMARK 620 4 HOH A 340 O 89.7 163.8 102.2 REMARK 620 5 HOH A 351 O 174.1 81.7 98.7 96.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 234 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 244 O REMARK 620 2 HOH A 273 O 84.2 REMARK 620 3 HOH B 107 O 78.7 160.9 REMARK 620 4 HOH B 120 O 87.6 89.5 98.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 54 OD1 REMARK 620 2 HOH B 316 O 90.4 REMARK 620 3 HOH B 331 O 80.1 164.4 REMARK 620 4 HOH B 361 O 86.7 75.7 91.3 REMARK 620 5 HOH B 371 O 91.7 108.0 84.8 176.0 REMARK 620 6 HOH B 398 O 164.1 87.0 98.6 77.5 104.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 235 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 208 O REMARK 620 2 HOH B 273 O 95.2 REMARK 620 3 HOH B 302 O 79.7 94.4 REMARK 620 4 HOH B 314 O 92.9 169.2 94.0 REMARK 620 5 HOH B 352 O 173.6 83.7 94.1 88.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 07N A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 07N B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 235 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U2D RELATED DB: PDB REMARK 900 RELATED ID: 3U2K RELATED DB: PDB DBREF 3TTZ A 14 104 UNP P0A0K8 GYRB_STAAU 14 104 DBREF 3TTZ A 128 233 UNP P0A0K8 GYRB_STAAU 128 233 DBREF 3TTZ B 14 104 UNP P0A0K8 GYRB_STAAU 14 104 DBREF 3TTZ B 128 233 UNP P0A0K8 GYRB_STAAU 128 233 SEQADV 3TTZ MET A 13 UNP P0A0K8 INITIATING METHIONINE SEQADV 3TTZ MET B 13 UNP P0A0K8 INITIATING METHIONINE SEQRES 1 A 198 MET TYR GLY ALA GLY GLN ILE GLN VAL LEU GLU GLY LEU SEQRES 2 A 198 GLU ALA VAL ARG LYS ARG PRO GLY MET TYR ILE GLY SER SEQRES 3 A 198 THR SER GLU ARG GLY LEU HIS HIS LEU VAL TRP GLU ILE SEQRES 4 A 198 VAL ASP ASN SER ILE ASP GLU ALA LEU ALA GLY TYR ALA SEQRES 5 A 198 ASN GLN ILE GLU VAL VAL ILE GLU LYS ASP ASN TRP ILE SEQRES 6 A 198 LYS VAL THR ASP ASN GLY ARG GLY ILE PRO VAL ASP ILE SEQRES 7 A 198 GLN GLU LYS MET GLY ARG PRO ALA VAL GLU VAL ILE LEU SEQRES 8 A 198 THR SER SER VAL VAL ASN ALA LEU SER GLN ASP LEU GLU SEQRES 9 A 198 VAL TYR VAL HIS ARG ASN GLU THR ILE TYR HIS GLN ALA SEQRES 10 A 198 TYR LYS LYS GLY VAL PRO GLN PHE ASP LEU LYS GLU VAL SEQRES 11 A 198 GLY THR THR ASP LYS THR GLY THR VAL ILE ARG PHE LYS SEQRES 12 A 198 ALA ASP GLY GLU ILE PHE THR GLU THR THR VAL TYR ASN SEQRES 13 A 198 TYR GLU THR LEU GLN GLN ARG ILE ARG GLU LEU ALA PHE SEQRES 14 A 198 LEU ASN LYS GLY ILE GLN ILE THR LEU ARG ASP GLU ARG SEQRES 15 A 198 ASP GLU GLU ASN VAL ARG GLU ASP SER TYR HIS TYR GLU SEQRES 16 A 198 GLY GLY ILE SEQRES 1 B 198 MET TYR GLY ALA GLY GLN ILE GLN VAL LEU GLU GLY LEU SEQRES 2 B 198 GLU ALA VAL ARG LYS ARG PRO GLY MET TYR ILE GLY SER SEQRES 3 B 198 THR SER GLU ARG GLY LEU HIS HIS LEU VAL TRP GLU ILE SEQRES 4 B 198 VAL ASP ASN SER ILE ASP GLU ALA LEU ALA GLY TYR ALA SEQRES 5 B 198 ASN GLN ILE GLU VAL VAL ILE GLU LYS ASP ASN TRP ILE SEQRES 6 B 198 LYS VAL THR ASP ASN GLY ARG GLY ILE PRO VAL ASP ILE SEQRES 7 B 198 GLN GLU LYS MET GLY ARG PRO ALA VAL GLU VAL ILE LEU SEQRES 8 B 198 THR SER SER VAL VAL ASN ALA LEU SER GLN ASP LEU GLU SEQRES 9 B 198 VAL TYR VAL HIS ARG ASN GLU THR ILE TYR HIS GLN ALA SEQRES 10 B 198 TYR LYS LYS GLY VAL PRO GLN PHE ASP LEU LYS GLU VAL SEQRES 11 B 198 GLY THR THR ASP LYS THR GLY THR VAL ILE ARG PHE LYS SEQRES 12 B 198 ALA ASP GLY GLU ILE PHE THR GLU THR THR VAL TYR ASN SEQRES 13 B 198 TYR GLU THR LEU GLN GLN ARG ILE ARG GLU LEU ALA PHE SEQRES 14 B 198 LEU ASN LYS GLY ILE GLN ILE THR LEU ARG ASP GLU ARG SEQRES 15 B 198 ASP GLU GLU ASN VAL ARG GLU ASP SER TYR HIS TYR GLU SEQRES 16 B 198 GLY GLY ILE HET 07N A 1 26 HET MG A 234 1 HET MG A 235 1 HET 07N B 2 26 HET MG B 1 1 HET MG B 234 1 HET MG B 235 1 HETNAM 07N 2-[(3S,4R)-4-{[(3,4-DICHLORO-5-METHYL-1H-PYRROL-2-YL) HETNAM 2 07N CARBONYL]AMINO}-3-FLUOROPIPERIDIN-1-YL]-1,3-THIAZOLE- HETNAM 3 07N 5-CARBOXYLIC ACID HETNAM MG MAGNESIUM ION FORMUL 3 07N 2(C15 H15 CL2 F N4 O3 S) FORMUL 4 MG 5(MG 2+) FORMUL 10 HOH *395(H2 O) HELIX 1 1 GLY A 15 ARG A 31 1 17 HELIX 2 2 ARG A 31 GLY A 37 1 7 HELIX 3 3 SER A 40 ALA A 61 1 22 HELIX 4 4 LYS A 73 ASN A 75 5 3 HELIX 5 5 PRO A 97 SER A 128 1 9 HELIX 6 6 SER A 129 LEU A 134 1 6 HELIX 7 7 ASN A 191 ASN A 206 1 16 HELIX 8 8 VAL B 21 ARG B 31 1 11 HELIX 9 9 PRO B 32 GLY B 37 1 6 HELIX 10 10 SER B 40 ALA B 61 1 22 HELIX 11 11 LYS B 73 ASN B 75 5 3 HELIX 12 12 PRO B 97 THR B 104 1 8 HELIX 13 13 SER B 129 LEU B 134 1 6 HELIX 14 14 ASN B 191 ASN B 206 1 16 SHEET 1 A 3 VAL A 157 PRO A 158 0 SHEET 2 A 3 THR A 147 LYS A 154 -1 N LYS A 154 O VAL A 157 SHEET 3 A 3 LYS A 163 THR A 167 -1 O VAL A 165 N ILE A 148 SHEET 1 B 8 VAL A 157 PRO A 158 0 SHEET 2 B 8 THR A 147 LYS A 154 -1 N LYS A 154 O VAL A 157 SHEET 3 B 8 SER A 135 ARG A 144 -1 N LEU A 138 O TYR A 153 SHEET 4 B 8 GLY A 172 ALA A 179 -1 O ARG A 176 N GLU A 139 SHEET 5 B 8 TRP A 76 ASP A 81 -1 N VAL A 79 O ILE A 175 SHEET 6 B 8 GLN A 66 GLU A 72 -1 N VAL A 70 O LYS A 78 SHEET 7 B 8 GLN A 210 ASP A 215 1 O THR A 212 N VAL A 69 SHEET 8 B 8 ARG A 223 TYR A 227 -1 O TYR A 227 N ILE A 211 SHEET 1 C 3 VAL B 157 PRO B 158 0 SHEET 2 C 3 THR B 147 LYS B 154 -1 N LYS B 154 O VAL B 157 SHEET 3 C 3 LYS B 163 THR B 167 -1 O VAL B 165 N ILE B 148 SHEET 1 D 8 VAL B 157 PRO B 158 0 SHEET 2 D 8 THR B 147 LYS B 154 -1 N LYS B 154 O VAL B 157 SHEET 3 D 8 SER B 135 ARG B 144 -1 N LEU B 138 O TYR B 153 SHEET 4 D 8 GLY B 172 ALA B 179 -1 O ARG B 176 N GLU B 139 SHEET 5 D 8 TRP B 76 ASP B 81 -1 N VAL B 79 O ILE B 175 SHEET 6 D 8 GLN B 66 GLU B 72 -1 N GLU B 72 O TRP B 76 SHEET 7 D 8 GLN B 210 ASP B 215 1 O ARG B 214 N ILE B 71 SHEET 8 D 8 ARG B 223 TYR B 227 -1 O ASP B 225 N LEU B 213 LINK O HOH A 11 MG MG A 234 1555 1555 2.23 LINK O HOH A 127 MG MG A 234 1555 1555 2.32 LINK O GLY A 208 MG MG A 235 1555 1555 2.22 LINK MG MG A 234 O HOH A 239 1555 1555 2.06 LINK MG MG A 234 O HOH A 374 1555 1555 2.35 LINK MG MG A 234 O HOH A 415 1555 1555 1.92 LINK MG MG A 235 O HOH A 324 1555 1555 2.30 LINK MG MG A 235 O HOH A 327 1555 1555 1.89 LINK MG MG A 235 O HOH A 340 1555 1555 1.98 LINK MG MG A 235 O HOH A 351 1555 1555 2.06 LINK O HOH A 244 MG MG B 234 1555 1555 2.14 LINK O HOH A 273 MG MG B 234 1555 1555 2.04 LINK MG MG B 1 OD1 ASN B 54 1555 1555 2.36 LINK MG MG B 1 O HOH B 316 1555 1555 2.06 LINK MG MG B 1 O HOH B 331 1555 1555 2.09 LINK MG MG B 1 O HOH B 361 1555 1555 2.27 LINK MG MG B 1 O HOH B 371 1555 1555 1.97 LINK MG MG B 1 O HOH B 398 1555 1555 2.02 LINK O HOH B 107 MG MG B 234 1555 1555 2.17 LINK O HOH B 120 MG MG B 234 1555 1555 1.92 LINK O GLY B 208 MG MG B 235 1555 1555 2.10 LINK MG MG B 235 O HOH B 273 1555 1555 2.04 LINK MG MG B 235 O HOH B 302 1555 1555 2.12 LINK MG MG B 235 O HOH B 314 1555 1555 2.20 LINK MG MG B 235 O HOH B 352 1555 1555 2.06 SITE 1 AC1 11 HOH A 2 HOH A 10 ASN A 54 SER A 55 SITE 2 AC1 11 GLU A 58 ASP A 81 ARG A 84 GLY A 85 SITE 3 AC1 11 ILE A 86 PRO A 87 ARG A 144 SITE 1 AC2 5 HOH A 11 HOH A 127 HOH A 239 HOH A 374 SITE 2 AC2 5 HOH A 415 SITE 1 AC3 6 GLY A 208 HIS A 228 HOH A 324 HOH A 327 SITE 2 AC3 6 HOH A 340 HOH A 351 SITE 1 AC4 12 THR A 185 GLU A 186 ASN B 54 SER B 55 SITE 2 AC4 12 GLU B 58 ASP B 81 ARG B 84 GLY B 85 SITE 3 AC4 12 ILE B 86 PRO B 87 ILE B 175 HOH B 239 SITE 1 AC5 6 ASN B 54 HOH B 316 HOH B 331 HOH B 361 SITE 2 AC5 6 HOH B 371 HOH B 398 SITE 1 AC6 4 HOH A 244 HOH A 273 HOH B 107 HOH B 120 SITE 1 AC7 6 GLY B 208 HIS B 228 HOH B 273 HOH B 302 SITE 2 AC7 6 HOH B 314 HOH B 352 CRYST1 143.178 55.629 51.216 90.00 100.37 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006984 0.000000 0.001277 0.00000 SCALE2 0.000000 0.017976 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019849 0.00000