data_3TVK # _entry.id 3TVK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3TVK pdb_00003tvk 10.2210/pdb3tvk/pdb RCSB RCSB067973 ? ? WWPDB D_1000067973 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3T9O _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3TVK _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-09-20 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zaehringer, F.' 1 'Schirmer, T.' 2 # _citation.id primary _citation.title 'Structure and signaling mechanism of a zinc-sensory diguanylate cyclase.' _citation.journal_abbrev Structure _citation.journal_volume 21 _citation.page_first 1149 _citation.page_last 1157 _citation.year 2013 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23769666 _citation.pdbx_database_id_DOI 10.1016/j.str.2013.04.026 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zahringer, F.' 1 ? primary 'Lacanna, E.' 2 ? primary 'Jenal, U.' 3 ? primary 'Schirmer, T.' 4 ? primary 'Boehm, A.' 5 ? # _cell.entry_id 3TVK _cell.length_a 79.623 _cell.length_b 79.623 _cell.length_c 51.207 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3TVK _symmetry.space_group_name_H-M 'P 62' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Diguanylate cyclase DgcZ' 20492.170 1 2.7.7.65 ? 'unp residues 127-296' ? 2 non-polymer syn ;9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) ; 690.411 3 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn 'D(-)-TARTARIC ACID' 150.087 1 ? ? ? ? 5 water nat water 18.015 140 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name DGC # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AIRSNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRY GGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEGHINITVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM FIDEQNVINRVLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;AIRSNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRY GGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEGHINITVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM FIDEQNVINRVLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ILE n 1 3 ARG n 1 4 SER n 1 5 ASN n 1 6 MET n 1 7 ASP n 1 8 VAL n 1 9 LEU n 1 10 THR n 1 11 GLY n 1 12 LEU n 1 13 PRO n 1 14 GLY n 1 15 ARG n 1 16 ARG n 1 17 VAL n 1 18 LEU n 1 19 ASP n 1 20 GLU n 1 21 SER n 1 22 PHE n 1 23 ASP n 1 24 HIS n 1 25 GLN n 1 26 LEU n 1 27 ARG n 1 28 ASN n 1 29 ALA n 1 30 GLU n 1 31 PRO n 1 32 LEU n 1 33 ASN n 1 34 LEU n 1 35 TYR n 1 36 LEU n 1 37 MET n 1 38 LEU n 1 39 LEU n 1 40 ASP n 1 41 ILE n 1 42 ASP n 1 43 ARG n 1 44 PHE n 1 45 LYS n 1 46 LEU n 1 47 VAL n 1 48 ASN n 1 49 ASP n 1 50 THR n 1 51 TYR n 1 52 GLY n 1 53 HIS n 1 54 LEU n 1 55 ILE n 1 56 GLY n 1 57 ASP n 1 58 VAL n 1 59 VAL n 1 60 LEU n 1 61 ARG n 1 62 THR n 1 63 LEU n 1 64 ALA n 1 65 THR n 1 66 TYR n 1 67 LEU n 1 68 ALA n 1 69 SER n 1 70 TRP n 1 71 THR n 1 72 ARG n 1 73 ASP n 1 74 TYR n 1 75 GLU n 1 76 THR n 1 77 VAL n 1 78 TYR n 1 79 ARG n 1 80 TYR n 1 81 GLY n 1 82 GLY n 1 83 GLU n 1 84 GLU n 1 85 PHE n 1 86 ILE n 1 87 ILE n 1 88 ILE n 1 89 VAL n 1 90 LYS n 1 91 ALA n 1 92 ALA n 1 93 ASN n 1 94 ASP n 1 95 GLU n 1 96 GLU n 1 97 ALA n 1 98 CYS n 1 99 ARG n 1 100 ALA n 1 101 GLY n 1 102 VAL n 1 103 ARG n 1 104 ILE n 1 105 CYS n 1 106 GLN n 1 107 LEU n 1 108 VAL n 1 109 ASP n 1 110 ASN n 1 111 HIS n 1 112 ALA n 1 113 ILE n 1 114 THR n 1 115 HIS n 1 116 SER n 1 117 GLU n 1 118 GLY n 1 119 HIS n 1 120 ILE n 1 121 ASN n 1 122 ILE n 1 123 THR n 1 124 VAL n 1 125 THR n 1 126 ALA n 1 127 GLY n 1 128 VAL n 1 129 SER n 1 130 ARG n 1 131 ALA n 1 132 PHE n 1 133 PRO n 1 134 GLU n 1 135 GLU n 1 136 PRO n 1 137 LEU n 1 138 ASP n 1 139 VAL n 1 140 VAL n 1 141 ILE n 1 142 GLY n 1 143 ARG n 1 144 ALA n 1 145 ASP n 1 146 ARG n 1 147 ALA n 1 148 MET n 1 149 TYR n 1 150 GLU n 1 151 GLY n 1 152 LYS n 1 153 GLN n 1 154 THR n 1 155 GLY n 1 156 ARG n 1 157 ASN n 1 158 ARG n 1 159 CYS n 1 160 MET n 1 161 PHE n 1 162 ILE n 1 163 ASP n 1 164 GLU n 1 165 GLN n 1 166 ASN n 1 167 VAL n 1 168 ILE n 1 169 ASN n 1 170 ARG n 1 171 VAL n 1 172 LEU n 1 173 GLU n 1 174 HIS n 1 175 HIS n 1 176 HIS n 1 177 HIS n 1 178 HIS n 1 179 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'b1535, JW1528, ydeG, ydeH' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K-12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain Rosetta _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YDEH_ECOLI _struct_ref.pdbx_db_accession P31129 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IRSNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYG GEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEGHINITVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCMF IDEQNVINRV ; _struct_ref.pdbx_align_begin 127 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3TVK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 171 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P31129 _struct_ref_seq.db_align_beg 127 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 296 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 127 _struct_ref_seq.pdbx_auth_seq_align_end 296 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3TVK ALA A 1 ? UNP P31129 ? ? 'expression tag' 126 1 1 3TVK LEU A 172 ? UNP P31129 ? ? 'expression tag' 297 2 1 3TVK GLU A 173 ? UNP P31129 ? ? 'expression tag' 298 3 1 3TVK HIS A 174 ? UNP P31129 ? ? 'expression tag' 299 4 1 3TVK HIS A 175 ? UNP P31129 ? ? 'expression tag' 300 5 1 3TVK HIS A 176 ? UNP P31129 ? ? 'expression tag' 301 6 1 3TVK HIS A 177 ? UNP P31129 ? ? 'expression tag' 302 7 1 3TVK HIS A 178 ? UNP P31129 ? ? 'expression tag' 303 8 1 3TVK HIS A 179 ? UNP P31129 ? ? 'expression tag' 304 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C2E non-polymer . ;9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) ; 'c-di-GMP; Cyclic diguanosine monophosphate' 'C20 H24 N10 O14 P2' 690.411 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TAR non-polymer . 'D(-)-TARTARIC ACID' ? 'C4 H6 O6' 150.087 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3TVK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.34 _exptl_crystal.density_percent_sol 47.50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '100mM Tris, 22.5% PEG 4000, pH 8.5, vapor diffusion, hanging drop, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2011-02-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_wavelength 0.979 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3TVK _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 51.210 _reflns.d_resolution_high 1.800 _reflns.number_obs 17292 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.07500 _reflns.pdbx_Rsym_value 0.07500 _reflns.pdbx_netI_over_sigmaI 24.1000 _reflns.B_iso_Wilson_estimate 19.75 _reflns.pdbx_redundancy 12.500 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.90 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.34600 _reflns_shell.pdbx_Rsym_value 0.34600 _reflns_shell.meanI_over_sigI_obs 7.600 _reflns_shell.pdbx_redundancy 12.00 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3TVK _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 17232 _refine.ls_number_reflns_all 17232 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.167 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.166 _refine.ls_R_factor_R_free 0.201 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 872 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.00 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.944 _refine.B_iso_mean 19.50 _refine.aniso_B[1][1] -0.21000 _refine.aniso_B[2][2] -0.21000 _refine.aniso_B[3][3] 0.32000 _refine.aniso_B[1][2] -0.11000 _refine.aniso_B[1][3] -0.00000 _refine.aniso_B[2][3] -0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1W25' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.117 _refine.overall_SU_ML 0.071 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.220 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1370 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 121 _refine_hist.number_atoms_solvent 140 _refine_hist.number_atoms_total 1631 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 15.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.022 ? 1550 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 999 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.281 2.058 ? 2132 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.804 3.006 ? 2356 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.523 5.000 ? 181 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.862 23.158 ? 76 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.863 15.000 ? 241 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.563 15.000 ? 17 'X-RAY DIFFRACTION' ? r_chiral_restr 0.081 0.200 ? 241 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1680 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 313 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.815 1.500 ? 866 'X-RAY DIFFRACTION' ? r_mcbond_other 0.681 1.500 ? 356 'X-RAY DIFFRACTION' ? r_mcangle_it 2.894 2.000 ? 1403 'X-RAY DIFFRACTION' ? r_scbond_it 4.094 3.000 ? 684 'X-RAY DIFFRACTION' ? r_scangle_it 6.019 4.500 ? 724 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.85 _refine_ls_shell.number_reflns_R_work 1207 _refine_ls_shell.R_factor_R_work 0.2290 _refine_ls_shell.percent_reflns_obs 99.92 _refine_ls_shell.R_factor_R_free 0.2820 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3TVK _struct.title 'Diguanylate cyclase domain of DgcZ' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3TVK _struct_keywords.text 'diguanylate cyclase, putative zinc sensor, c-di-GMP, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 14 ? ASN A 28 ? GLY A 139 ASN A 153 1 ? 15 HELX_P HELX_P2 2 ARG A 43 ? GLY A 52 ? ARG A 168 GLY A 177 1 ? 10 HELX_P HELX_P3 3 GLY A 52 ? TRP A 70 ? GLY A 177 TRP A 195 1 ? 19 HELX_P HELX_P4 4 ASN A 93 ? HIS A 111 ? ASN A 218 HIS A 236 1 ? 19 HELX_P HELX_P5 5 PRO A 136 ? THR A 154 ? PRO A 261 THR A 279 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? B C2E . P1 ? ? ? 1_555 B C2E . "O3'" ? ? A C2E 501 A C2E 501 4_665 ? ? ? ? ? ? ? 1.653 ? ? metalc1 metalc ? ? A ASP 73 OD2 ? ? ? 1_555 E MG . MG ? ? A ASP 198 A MG 504 1_555 ? ? ? ? ? ? ? 2.216 ? ? metalc2 metalc ? ? C C2E . O1P ? ? ? 1_555 E MG . MG ? ? A C2E 502 A MG 504 1_555 ? ? ? ? ? ? ? 2.038 ? ? metalc3 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 504 A HOH 678 1_555 ? ? ? ? ? ? ? 2.241 ? ? metalc4 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 504 A HOH 680 1_555 ? ? ? ? ? ? ? 2.033 ? ? metalc5 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 504 A HOH 685 1_555 ? ? ? ? ? ? ? 2.319 ? ? metalc6 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 504 A HOH 723 1_555 ? ? ? ? ? ? ? 2.032 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 30 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 155 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 31 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 156 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 7.80 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 77 ? ARG A 79 ? VAL A 202 ARG A 204 A 2 GLU A 84 ? ALA A 91 ? GLU A 209 ALA A 216 A 3 ASN A 33 ? ILE A 41 ? ASN A 158 ILE A 166 A 4 VAL A 124 ? ALA A 131 ? VAL A 249 ALA A 256 A 5 ARG A 158 ? ILE A 162 ? ARG A 283 ILE A 287 A 6 ILE A 168 ? ARG A 170 ? ILE A 293 ARG A 295 B 1 ILE A 113 ? HIS A 115 ? ILE A 238 HIS A 240 B 2 GLY A 118 ? ILE A 120 ? GLY A 243 ILE A 245 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 78 ? N TYR A 203 O ILE A 86 ? O ILE A 211 A 2 3 O VAL A 89 ? O VAL A 214 N TYR A 35 ? N TYR A 160 A 3 4 N LEU A 38 ? N LEU A 163 O GLY A 127 ? O GLY A 252 A 4 5 N ALA A 126 ? N ALA A 251 O ARG A 158 ? O ARG A 283 A 5 6 N PHE A 161 ? N PHE A 286 O ASN A 169 ? O ASN A 294 B 1 2 N ILE A 113 ? N ILE A 238 O ILE A 120 ? O ILE A 245 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A C2E 501 ? 12 'BINDING SITE FOR RESIDUE C2E A 501' AC2 Software A C2E 502 ? 25 'BINDING SITE FOR RESIDUE C2E A 502' AC3 Software A C2E 503 ? 17 'BINDING SITE FOR RESIDUE C2E A 503' AC4 Software A MG 504 ? 6 'BINDING SITE FOR RESIDUE MG A 504' AC5 Software A TAR 505 ? 6 'BINDING SITE FOR RESIDUE TAR A 505' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 PHE A 44 ? PHE A 169 . ? 1_555 ? 2 AC1 12 LYS A 45 ? LYS A 170 . ? 1_555 ? 3 AC1 12 ASN A 48 ? ASN A 173 . ? 1_555 ? 4 AC1 12 HIS A 53 ? HIS A 178 . ? 1_555 ? 5 AC1 12 GLY A 56 ? GLY A 181 . ? 1_555 ? 6 AC1 12 ASP A 57 ? ASP A 182 . ? 1_555 ? 7 AC1 12 LEU A 60 ? LEU A 185 . ? 1_555 ? 8 AC1 12 ARG A 79 ? ARG A 204 . ? 1_555 ? 9 AC1 12 GLY A 82 ? GLY A 207 . ? 1_555 ? 10 AC1 12 GLU A 83 ? GLU A 208 . ? 1_555 ? 11 AC1 12 HOH G . ? HOH A 641 . ? 1_555 ? 12 AC1 12 HOH G . ? HOH A 732 . ? 1_555 ? 13 AC2 25 SER A 69 ? SER A 194 . ? 1_555 ? 14 AC2 25 TRP A 70 ? TRP A 195 . ? 1_555 ? 15 AC2 25 THR A 71 ? THR A 196 . ? 1_555 ? 16 AC2 25 ARG A 72 ? ARG A 197 . ? 1_555 ? 17 AC2 25 ASP A 73 ? ASP A 198 . ? 1_555 ? 18 AC2 25 ARG A 103 ? ARG A 228 . ? 1_555 ? 19 AC2 25 ASP A 145 ? ASP A 270 . ? 6_555 ? 20 AC2 25 ARG A 146 ? ARG A 271 . ? 6_555 ? 21 AC2 25 TYR A 149 ? TYR A 274 . ? 6_555 ? 22 AC2 25 GLU A 150 ? GLU A 275 . ? 6_555 ? 23 AC2 25 GLN A 153 ? GLN A 278 . ? 6_555 ? 24 AC2 25 ILE A 168 ? ILE A 293 . ? 6_555 ? 25 AC2 25 C2E D . ? C2E A 503 . ? 1_555 ? 26 AC2 25 MG E . ? MG A 504 . ? 1_555 ? 27 AC2 25 HOH G . ? HOH A 615 . ? 1_555 ? 28 AC2 25 HOH G . ? HOH A 620 . ? 6_555 ? 29 AC2 25 HOH G . ? HOH A 636 . ? 6_555 ? 30 AC2 25 HOH G . ? HOH A 678 . ? 1_555 ? 31 AC2 25 HOH G . ? HOH A 680 . ? 1_555 ? 32 AC2 25 HOH G . ? HOH A 685 . ? 1_555 ? 33 AC2 25 HOH G . ? HOH A 714 . ? 6_555 ? 34 AC2 25 HOH G . ? HOH A 717 . ? 1_555 ? 35 AC2 25 HOH G . ? HOH A 726 . ? 3_565 ? 36 AC2 25 HOH G . ? HOH A 729 . ? 1_555 ? 37 AC2 25 HOH G . ? HOH A 734 . ? 1_555 ? 38 AC3 17 ALA A 1 ? ALA A 126 . ? 6_554 ? 39 AC3 17 ARG A 72 ? ARG A 197 . ? 1_555 ? 40 AC3 17 GLU A 75 ? GLU A 200 . ? 1_555 ? 41 AC3 17 LYS A 90 ? LYS A 215 . ? 1_555 ? 42 AC3 17 GLU A 96 ? GLU A 221 . ? 1_555 ? 43 AC3 17 ARG A 99 ? ARG A 224 . ? 1_555 ? 44 AC3 17 ALA A 100 ? ALA A 225 . ? 1_555 ? 45 AC3 17 ARG A 103 ? ARG A 228 . ? 1_555 ? 46 AC3 17 ARG A 146 ? ARG A 271 . ? 6_555 ? 47 AC3 17 C2E C . ? C2E A 502 . ? 1_555 ? 48 AC3 17 HOH G . ? HOH A 604 . ? 1_555 ? 49 AC3 17 HOH G . ? HOH A 607 . ? 6_555 ? 50 AC3 17 HOH G . ? HOH A 609 . ? 1_555 ? 51 AC3 17 HOH G . ? HOH A 638 . ? 1_555 ? 52 AC3 17 HOH G . ? HOH A 711 . ? 1_555 ? 53 AC3 17 HOH G . ? HOH A 727 . ? 6_554 ? 54 AC3 17 HOH G . ? HOH A 738 . ? 1_555 ? 55 AC4 6 ASP A 73 ? ASP A 198 . ? 1_555 ? 56 AC4 6 C2E C . ? C2E A 502 . ? 1_555 ? 57 AC4 6 HOH G . ? HOH A 678 . ? 1_555 ? 58 AC4 6 HOH G . ? HOH A 680 . ? 1_555 ? 59 AC4 6 HOH G . ? HOH A 685 . ? 1_555 ? 60 AC4 6 HOH G . ? HOH A 723 . ? 1_555 ? 61 AC5 6 ARG A 43 ? ARG A 168 . ? 1_555 ? 62 AC5 6 SER A 69 ? SER A 194 . ? 2_664 ? 63 AC5 6 TRP A 70 ? TRP A 195 . ? 2_664 ? 64 AC5 6 HIS A 111 ? HIS A 236 . ? 2_664 ? 65 AC5 6 GLY A 155 ? GLY A 280 . ? 1_555 ? 66 AC5 6 HOH G . ? HOH A 739 . ? 1_555 ? # _atom_sites.entry_id 3TVK _atom_sites.fract_transf_matrix[1][1] 0.012559 _atom_sites.fract_transf_matrix[1][2] 0.007251 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014502 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019529 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 126 126 ALA ALA A . n A 1 2 ILE 2 127 127 ILE ILE A . n A 1 3 ARG 3 128 128 ARG ARG A . n A 1 4 SER 4 129 129 SER SER A . n A 1 5 ASN 5 130 130 ASN ASN A . n A 1 6 MET 6 131 131 MET MET A . n A 1 7 ASP 7 132 132 ASP ASP A . n A 1 8 VAL 8 133 133 VAL VAL A . n A 1 9 LEU 9 134 134 LEU LEU A . n A 1 10 THR 10 135 135 THR THR A . n A 1 11 GLY 11 136 136 GLY GLY A . n A 1 12 LEU 12 137 137 LEU LEU A . n A 1 13 PRO 13 138 138 PRO PRO A . n A 1 14 GLY 14 139 139 GLY GLY A . n A 1 15 ARG 15 140 140 ARG ARG A . n A 1 16 ARG 16 141 141 ARG ARG A . n A 1 17 VAL 17 142 142 VAL VAL A . n A 1 18 LEU 18 143 143 LEU LEU A . n A 1 19 ASP 19 144 144 ASP ASP A . n A 1 20 GLU 20 145 145 GLU GLU A . n A 1 21 SER 21 146 146 SER SER A . n A 1 22 PHE 22 147 147 PHE PHE A . n A 1 23 ASP 23 148 148 ASP ASP A . n A 1 24 HIS 24 149 149 HIS HIS A . n A 1 25 GLN 25 150 150 GLN GLN A . n A 1 26 LEU 26 151 151 LEU LEU A . n A 1 27 ARG 27 152 152 ARG ARG A . n A 1 28 ASN 28 153 153 ASN ASN A . n A 1 29 ALA 29 154 154 ALA ALA A . n A 1 30 GLU 30 155 155 GLU GLU A . n A 1 31 PRO 31 156 156 PRO PRO A . n A 1 32 LEU 32 157 157 LEU LEU A . n A 1 33 ASN 33 158 158 ASN ASN A . n A 1 34 LEU 34 159 159 LEU LEU A . n A 1 35 TYR 35 160 160 TYR TYR A . n A 1 36 LEU 36 161 161 LEU LEU A . n A 1 37 MET 37 162 162 MET MET A . n A 1 38 LEU 38 163 163 LEU LEU A . n A 1 39 LEU 39 164 164 LEU LEU A . n A 1 40 ASP 40 165 165 ASP ASP A . n A 1 41 ILE 41 166 166 ILE ILE A . n A 1 42 ASP 42 167 167 ASP ASP A . n A 1 43 ARG 43 168 168 ARG ARG A . n A 1 44 PHE 44 169 169 PHE PHE A . n A 1 45 LYS 45 170 170 LYS LYS A . n A 1 46 LEU 46 171 171 LEU LEU A . n A 1 47 VAL 47 172 172 VAL VAL A . n A 1 48 ASN 48 173 173 ASN ASN A . n A 1 49 ASP 49 174 174 ASP ASP A . n A 1 50 THR 50 175 175 THR THR A . n A 1 51 TYR 51 176 176 TYR TYR A . n A 1 52 GLY 52 177 177 GLY GLY A . n A 1 53 HIS 53 178 178 HIS HIS A . n A 1 54 LEU 54 179 179 LEU LEU A . n A 1 55 ILE 55 180 180 ILE ILE A . n A 1 56 GLY 56 181 181 GLY GLY A . n A 1 57 ASP 57 182 182 ASP ASP A . n A 1 58 VAL 58 183 183 VAL VAL A . n A 1 59 VAL 59 184 184 VAL VAL A . n A 1 60 LEU 60 185 185 LEU LEU A . n A 1 61 ARG 61 186 186 ARG ARG A . n A 1 62 THR 62 187 187 THR THR A . n A 1 63 LEU 63 188 188 LEU LEU A . n A 1 64 ALA 64 189 189 ALA ALA A . n A 1 65 THR 65 190 190 THR THR A . n A 1 66 TYR 66 191 191 TYR TYR A . n A 1 67 LEU 67 192 192 LEU LEU A . n A 1 68 ALA 68 193 193 ALA ALA A . n A 1 69 SER 69 194 194 SER SER A . n A 1 70 TRP 70 195 195 TRP TRP A . n A 1 71 THR 71 196 196 THR THR A . n A 1 72 ARG 72 197 197 ARG ARG A . n A 1 73 ASP 73 198 198 ASP ASP A . n A 1 74 TYR 74 199 199 TYR TYR A . n A 1 75 GLU 75 200 200 GLU GLU A . n A 1 76 THR 76 201 201 THR THR A . n A 1 77 VAL 77 202 202 VAL VAL A . n A 1 78 TYR 78 203 203 TYR TYR A . n A 1 79 ARG 79 204 204 ARG ARG A . n A 1 80 TYR 80 205 205 TYR TYR A . n A 1 81 GLY 81 206 206 GLY GLY A . n A 1 82 GLY 82 207 207 GLY GLY A . n A 1 83 GLU 83 208 208 GLU GLU A . n A 1 84 GLU 84 209 209 GLU GLU A . n A 1 85 PHE 85 210 210 PHE PHE A . n A 1 86 ILE 86 211 211 ILE ILE A . n A 1 87 ILE 87 212 212 ILE ILE A . n A 1 88 ILE 88 213 213 ILE ILE A . n A 1 89 VAL 89 214 214 VAL VAL A . n A 1 90 LYS 90 215 215 LYS LYS A . n A 1 91 ALA 91 216 216 ALA ALA A . n A 1 92 ALA 92 217 217 ALA ALA A . n A 1 93 ASN 93 218 218 ASN ASN A . n A 1 94 ASP 94 219 219 ASP ASP A . n A 1 95 GLU 95 220 220 GLU GLU A . n A 1 96 GLU 96 221 221 GLU GLU A . n A 1 97 ALA 97 222 222 ALA ALA A . n A 1 98 CYS 98 223 223 CYS CYS A . n A 1 99 ARG 99 224 224 ARG ARG A . n A 1 100 ALA 100 225 225 ALA ALA A . n A 1 101 GLY 101 226 226 GLY GLY A . n A 1 102 VAL 102 227 227 VAL VAL A . n A 1 103 ARG 103 228 228 ARG ARG A . n A 1 104 ILE 104 229 229 ILE ILE A . n A 1 105 CYS 105 230 230 CYS CYS A . n A 1 106 GLN 106 231 231 GLN GLN A . n A 1 107 LEU 107 232 232 LEU LEU A . n A 1 108 VAL 108 233 233 VAL VAL A . n A 1 109 ASP 109 234 234 ASP ASP A . n A 1 110 ASN 110 235 235 ASN ASN A . n A 1 111 HIS 111 236 236 HIS HIS A . n A 1 112 ALA 112 237 237 ALA ALA A . n A 1 113 ILE 113 238 238 ILE ILE A . n A 1 114 THR 114 239 239 THR THR A . n A 1 115 HIS 115 240 240 HIS HIS A . n A 1 116 SER 116 241 241 SER SER A . n A 1 117 GLU 117 242 242 GLU GLU A . n A 1 118 GLY 118 243 243 GLY GLY A . n A 1 119 HIS 119 244 244 HIS HIS A . n A 1 120 ILE 120 245 245 ILE ILE A . n A 1 121 ASN 121 246 246 ASN ASN A . n A 1 122 ILE 122 247 247 ILE ILE A . n A 1 123 THR 123 248 248 THR THR A . n A 1 124 VAL 124 249 249 VAL VAL A . n A 1 125 THR 125 250 250 THR THR A . n A 1 126 ALA 126 251 251 ALA ALA A . n A 1 127 GLY 127 252 252 GLY GLY A . n A 1 128 VAL 128 253 253 VAL VAL A . n A 1 129 SER 129 254 254 SER SER A . n A 1 130 ARG 130 255 255 ARG ARG A . n A 1 131 ALA 131 256 256 ALA ALA A . n A 1 132 PHE 132 257 257 PHE PHE A . n A 1 133 PRO 133 258 258 PRO PRO A . n A 1 134 GLU 134 259 259 GLU GLU A . n A 1 135 GLU 135 260 260 GLU GLU A . n A 1 136 PRO 136 261 261 PRO PRO A . n A 1 137 LEU 137 262 262 LEU LEU A . n A 1 138 ASP 138 263 263 ASP ASP A . n A 1 139 VAL 139 264 264 VAL VAL A . n A 1 140 VAL 140 265 265 VAL VAL A . n A 1 141 ILE 141 266 266 ILE ILE A . n A 1 142 GLY 142 267 267 GLY GLY A . n A 1 143 ARG 143 268 268 ARG ARG A . n A 1 144 ALA 144 269 269 ALA ALA A . n A 1 145 ASP 145 270 270 ASP ASP A . n A 1 146 ARG 146 271 271 ARG ARG A . n A 1 147 ALA 147 272 272 ALA ALA A . n A 1 148 MET 148 273 273 MET MET A . n A 1 149 TYR 149 274 274 TYR TYR A . n A 1 150 GLU 150 275 275 GLU GLU A . n A 1 151 GLY 151 276 276 GLY GLY A . n A 1 152 LYS 152 277 277 LYS LYS A . n A 1 153 GLN 153 278 278 GLN GLN A . n A 1 154 THR 154 279 279 THR THR A . n A 1 155 GLY 155 280 280 GLY GLY A . n A 1 156 ARG 156 281 281 ARG ARG A . n A 1 157 ASN 157 282 282 ASN ASN A . n A 1 158 ARG 158 283 283 ARG ARG A . n A 1 159 CYS 159 284 284 CYS CYS A . n A 1 160 MET 160 285 285 MET MET A . n A 1 161 PHE 161 286 286 PHE PHE A . n A 1 162 ILE 162 287 287 ILE ILE A . n A 1 163 ASP 163 288 288 ASP ASP A . n A 1 164 GLU 164 289 289 GLU GLU A . n A 1 165 GLN 165 290 290 GLN GLN A . n A 1 166 ASN 166 291 291 ASN ASN A . n A 1 167 VAL 167 292 292 VAL VAL A . n A 1 168 ILE 168 293 293 ILE ILE A . n A 1 169 ASN 169 294 294 ASN ASN A . n A 1 170 ARG 170 295 295 ARG ARG A . n A 1 171 VAL 171 296 296 VAL VAL A . n A 1 172 LEU 172 297 297 LEU LEU A . n A 1 173 GLU 173 298 ? ? ? A . n A 1 174 HIS 174 299 ? ? ? A . n A 1 175 HIS 175 300 ? ? ? A . n A 1 176 HIS 176 301 ? ? ? A . n A 1 177 HIS 177 302 ? ? ? A . n A 1 178 HIS 178 303 ? ? ? A . n A 1 179 HIS 179 304 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C2E 1 501 501 C2E C2E A . C 2 C2E 1 502 503 C2E C2E A . D 2 C2E 1 503 505 C2E C2E A . E 3 MG 1 504 601 MG MG A . F 4 TAR 1 505 800 TAR TAR A . G 5 HOH 1 601 1 HOH HOH A . G 5 HOH 2 602 2 HOH HOH A . G 5 HOH 3 603 3 HOH HOH A . G 5 HOH 4 604 4 HOH HOH A . G 5 HOH 5 605 5 HOH HOH A . G 5 HOH 6 606 6 HOH HOH A . G 5 HOH 7 607 7 HOH HOH A . G 5 HOH 8 608 8 HOH HOH A . G 5 HOH 9 609 9 HOH HOH A . G 5 HOH 10 610 10 HOH HOH A . G 5 HOH 11 611 11 HOH HOH A . G 5 HOH 12 612 12 HOH HOH A . G 5 HOH 13 613 13 HOH HOH A . G 5 HOH 14 614 14 HOH HOH A . G 5 HOH 15 615 15 HOH HOH A . G 5 HOH 16 616 16 HOH HOH A . G 5 HOH 17 617 17 HOH HOH A . G 5 HOH 18 618 18 HOH HOH A . G 5 HOH 19 619 19 HOH HOH A . G 5 HOH 20 620 20 HOH HOH A . G 5 HOH 21 621 21 HOH HOH A . G 5 HOH 22 622 22 HOH HOH A . G 5 HOH 23 623 23 HOH HOH A . G 5 HOH 24 624 24 HOH HOH A . G 5 HOH 25 625 25 HOH HOH A . G 5 HOH 26 626 26 HOH HOH A . G 5 HOH 27 627 27 HOH HOH A . G 5 HOH 28 628 28 HOH HOH A . G 5 HOH 29 629 29 HOH HOH A . G 5 HOH 30 630 30 HOH HOH A . G 5 HOH 31 631 31 HOH HOH A . G 5 HOH 32 632 32 HOH HOH A . G 5 HOH 33 633 33 HOH HOH A . G 5 HOH 34 634 34 HOH HOH A . G 5 HOH 35 635 35 HOH HOH A . G 5 HOH 36 636 36 HOH HOH A . G 5 HOH 37 637 37 HOH HOH A . G 5 HOH 38 638 38 HOH HOH A . G 5 HOH 39 639 39 HOH HOH A . G 5 HOH 40 640 40 HOH HOH A . G 5 HOH 41 641 41 HOH HOH A . G 5 HOH 42 642 42 HOH HOH A . G 5 HOH 43 643 43 HOH HOH A . G 5 HOH 44 644 44 HOH HOH A . G 5 HOH 45 645 45 HOH HOH A . G 5 HOH 46 646 46 HOH HOH A . G 5 HOH 47 647 47 HOH HOH A . G 5 HOH 48 648 48 HOH HOH A . G 5 HOH 49 649 49 HOH HOH A . G 5 HOH 50 650 50 HOH HOH A . G 5 HOH 51 651 51 HOH HOH A . G 5 HOH 52 652 52 HOH HOH A . G 5 HOH 53 653 53 HOH HOH A . G 5 HOH 54 654 54 HOH HOH A . G 5 HOH 55 655 55 HOH HOH A . G 5 HOH 56 656 56 HOH HOH A . G 5 HOH 57 657 57 HOH HOH A . G 5 HOH 58 658 58 HOH HOH A . G 5 HOH 59 659 59 HOH HOH A . G 5 HOH 60 660 60 HOH HOH A . G 5 HOH 61 661 61 HOH HOH A . G 5 HOH 62 662 62 HOH HOH A . G 5 HOH 63 663 63 HOH HOH A . G 5 HOH 64 664 64 HOH HOH A . G 5 HOH 65 665 65 HOH HOH A . G 5 HOH 66 666 66 HOH HOH A . G 5 HOH 67 667 67 HOH HOH A . G 5 HOH 68 668 68 HOH HOH A . G 5 HOH 69 669 69 HOH HOH A . G 5 HOH 70 670 70 HOH HOH A . G 5 HOH 71 671 71 HOH HOH A . G 5 HOH 72 672 72 HOH HOH A . G 5 HOH 73 673 73 HOH HOH A . G 5 HOH 74 674 74 HOH HOH A . G 5 HOH 75 675 75 HOH HOH A . G 5 HOH 76 676 76 HOH HOH A . G 5 HOH 77 677 77 HOH HOH A . G 5 HOH 78 678 78 HOH HOH A . G 5 HOH 79 679 79 HOH HOH A . G 5 HOH 80 680 80 HOH HOH A . G 5 HOH 81 681 81 HOH HOH A . G 5 HOH 82 682 82 HOH HOH A . G 5 HOH 83 683 83 HOH HOH A . G 5 HOH 84 684 84 HOH HOH A . G 5 HOH 85 685 85 HOH HOH A . G 5 HOH 86 686 86 HOH HOH A . G 5 HOH 87 687 87 HOH HOH A . G 5 HOH 88 688 88 HOH HOH A . G 5 HOH 89 689 89 HOH HOH A . G 5 HOH 90 690 90 HOH HOH A . G 5 HOH 91 691 91 HOH HOH A . G 5 HOH 92 692 92 HOH HOH A . G 5 HOH 93 693 93 HOH HOH A . G 5 HOH 94 694 94 HOH HOH A . G 5 HOH 95 695 95 HOH HOH A . G 5 HOH 96 696 96 HOH HOH A . G 5 HOH 97 697 97 HOH HOH A . G 5 HOH 98 698 98 HOH HOH A . G 5 HOH 99 699 99 HOH HOH A . G 5 HOH 100 700 100 HOH HOH A . G 5 HOH 101 701 101 HOH HOH A . G 5 HOH 102 702 102 HOH HOH A . G 5 HOH 103 703 103 HOH HOH A . G 5 HOH 104 704 104 HOH HOH A . G 5 HOH 105 705 105 HOH HOH A . G 5 HOH 106 706 106 HOH HOH A . G 5 HOH 107 707 107 HOH HOH A . G 5 HOH 108 708 108 HOH HOH A . G 5 HOH 109 709 109 HOH HOH A . G 5 HOH 110 710 110 HOH HOH A . G 5 HOH 111 711 111 HOH HOH A . G 5 HOH 112 712 112 HOH HOH A . G 5 HOH 113 713 113 HOH HOH A . G 5 HOH 114 714 114 HOH HOH A . G 5 HOH 115 715 115 HOH HOH A . G 5 HOH 116 716 116 HOH HOH A . G 5 HOH 117 717 117 HOH HOH A . G 5 HOH 118 718 118 HOH HOH A . G 5 HOH 119 719 119 HOH HOH A . G 5 HOH 120 720 120 HOH HOH A . G 5 HOH 121 721 121 HOH HOH A . G 5 HOH 122 722 122 HOH HOH A . G 5 HOH 123 723 123 HOH HOH A . G 5 HOH 124 724 124 HOH HOH A . G 5 HOH 125 725 125 HOH HOH A . G 5 HOH 126 726 139 HOH HOH A . G 5 HOH 127 727 140 HOH HOH A . G 5 HOH 128 728 126 HOH HOH A . G 5 HOH 129 729 127 HOH HOH A . G 5 HOH 130 730 128 HOH HOH A . G 5 HOH 131 731 129 HOH HOH A . G 5 HOH 132 732 130 HOH HOH A . G 5 HOH 133 733 131 HOH HOH A . G 5 HOH 134 734 132 HOH HOH A . G 5 HOH 135 735 133 HOH HOH A . G 5 HOH 136 736 134 HOH HOH A . G 5 HOH 137 737 135 HOH HOH A . G 5 HOH 138 738 136 HOH HOH A . G 5 HOH 139 739 137 HOH HOH A . G 5 HOH 140 740 138 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 73 ? A ASP 198 ? 1_555 MG ? E MG . ? A MG 504 ? 1_555 O1P ? C C2E . ? A C2E 502 ? 1_555 90.8 ? 2 OD2 ? A ASP 73 ? A ASP 198 ? 1_555 MG ? E MG . ? A MG 504 ? 1_555 O ? G HOH . ? A HOH 678 ? 1_555 170.5 ? 3 O1P ? C C2E . ? A C2E 502 ? 1_555 MG ? E MG . ? A MG 504 ? 1_555 O ? G HOH . ? A HOH 678 ? 1_555 88.7 ? 4 OD2 ? A ASP 73 ? A ASP 198 ? 1_555 MG ? E MG . ? A MG 504 ? 1_555 O ? G HOH . ? A HOH 680 ? 1_555 79.5 ? 5 O1P ? C C2E . ? A C2E 502 ? 1_555 MG ? E MG . ? A MG 504 ? 1_555 O ? G HOH . ? A HOH 680 ? 1_555 94.9 ? 6 O ? G HOH . ? A HOH 678 ? 1_555 MG ? E MG . ? A MG 504 ? 1_555 O ? G HOH . ? A HOH 680 ? 1_555 91.1 ? 7 OD2 ? A ASP 73 ? A ASP 198 ? 1_555 MG ? E MG . ? A MG 504 ? 1_555 O ? G HOH . ? A HOH 685 ? 1_555 102.8 ? 8 O1P ? C C2E . ? A C2E 502 ? 1_555 MG ? E MG . ? A MG 504 ? 1_555 O ? G HOH . ? A HOH 685 ? 1_555 84.8 ? 9 O ? G HOH . ? A HOH 678 ? 1_555 MG ? E MG . ? A MG 504 ? 1_555 O ? G HOH . ? A HOH 685 ? 1_555 86.6 ? 10 O ? G HOH . ? A HOH 680 ? 1_555 MG ? E MG . ? A MG 504 ? 1_555 O ? G HOH . ? A HOH 685 ? 1_555 177.6 ? 11 OD2 ? A ASP 73 ? A ASP 198 ? 1_555 MG ? E MG . ? A MG 504 ? 1_555 O ? G HOH . ? A HOH 723 ? 1_555 86.5 ? 12 O1P ? C C2E . ? A C2E 502 ? 1_555 MG ? E MG . ? A MG 504 ? 1_555 O ? G HOH . ? A HOH 723 ? 1_555 173.3 ? 13 O ? G HOH . ? A HOH 678 ? 1_555 MG ? E MG . ? A MG 504 ? 1_555 O ? G HOH . ? A HOH 723 ? 1_555 94.9 ? 14 O ? G HOH . ? A HOH 680 ? 1_555 MG ? E MG . ? A MG 504 ? 1_555 O ? G HOH . ? A HOH 723 ? 1_555 90.6 ? 15 O ? G HOH . ? A HOH 685 ? 1_555 MG ? E MG . ? A MG 504 ? 1_555 O ? G HOH . ? A HOH 723 ? 1_555 89.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-03 2 'Structure model' 1 1 2016-04-13 3 'Structure model' 1 2 2016-04-27 4 'Structure model' 1 3 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 8 4 'Structure model' struct_conn 9 4 'Structure model' struct_conn_type 10 4 'Structure model' struct_ref_seq_dif 11 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.pdbx_synonyms' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.value' 17 4 'Structure model' '_struct_conn.conn_type_id' 18 4 'Structure model' '_struct_conn.id' 19 4 'Structure model' '_struct_conn.pdbx_dist_value' 20 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 21 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 4 'Structure model' '_struct_conn.ptnr2_symmetry' 33 4 'Structure model' '_struct_conn_type.id' 34 4 'Structure model' '_struct_ref_seq_dif.details' 35 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0102 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 2 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 3 SCALA . ? ? ? ? 'data scaling' ? ? ? 4 PHASER . ? ? ? ? phasing ? ? ? 5 # _pdbx_entry_details.entry_id 3TVK _pdbx_entry_details.nonpolymer_details ;AUTHORS STATE THAT ONLY HALF OF RESIDUE C2E A 501 HAS BEEN MODELED. THE OTHER HALF OF THE 2-FOLD SYMMETRIC C2E LIGAND IS GENERATED BY A CRYSTALLOGRAPHIC 2-FOLD AXIS ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 281 ? ? 68.00 -176.70 2 1 ARG A 281 ? ? 67.83 -176.61 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GLU 155 ? CD ? A GLU 30 CD 2 1 Y 0 A GLU 155 ? OE1 ? A GLU 30 OE1 3 1 Y 0 A GLU 155 ? OE2 ? A GLU 30 OE2 4 1 Y 0 A LYS 170 ? CD ? A LYS 45 CD 5 1 Y 0 A LYS 170 ? CE ? A LYS 45 CE 6 1 Y 0 A LYS 170 ? NZ ? A LYS 45 NZ 7 1 Y 0 A LEU 179 ? CG ? A LEU 54 CG 8 1 Y 0 A LEU 179 ? CD1 ? A LEU 54 CD1 9 1 Y 0 A LEU 179 ? CD2 ? A LEU 54 CD2 10 1 N 1 A TAR 505 ? O1 ? F TAR 1 O1 11 1 N 1 A TAR 505 ? O11 ? F TAR 1 O11 12 1 N 1 A TAR 505 ? C1 ? F TAR 1 C1 13 1 N 1 A TAR 505 ? O2 ? F TAR 1 O2 14 1 N 1 A TAR 505 ? O3 ? F TAR 1 O3 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 298 ? A GLU 173 2 1 Y 1 A HIS 299 ? A HIS 174 3 1 Y 1 A HIS 300 ? A HIS 175 4 1 Y 1 A HIS 301 ? A HIS 176 5 1 Y 1 A HIS 302 ? A HIS 177 6 1 Y 1 A HIS 303 ? A HIS 178 7 1 Y 1 A HIS 304 ? A HIS 179 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 C2E P1 P N N 74 C2E O2P O N N 75 C2E O1P O N N 76 C2E "O5'" O N N 77 C2E "C5'" C N N 78 C2E "C4'" C N R 79 C2E "O4'" O N N 80 C2E "C3'" C N S 81 C2E "O3'" O N N 82 C2E "C2'" C N R 83 C2E "O2'" O N N 84 C2E "C1'" C N R 85 C2E N9 N Y N 86 C2E C8 C Y N 87 C2E N7 N Y N 88 C2E C5 C Y N 89 C2E C6 C N N 90 C2E O6 O N N 91 C2E N1 N N N 92 C2E C2 C N N 93 C2E N2 N N N 94 C2E N3 N N N 95 C2E C4 C Y N 96 C2E P11 P N N 97 C2E O21 O N N 98 C2E O11 O N N 99 C2E O5A O N N 100 C2E C5A C N N 101 C2E C4A C N R 102 C2E O4A O N N 103 C2E C3A C N S 104 C2E O3A O N N 105 C2E C2A C N R 106 C2E O2A O N N 107 C2E C1A C N R 108 C2E N91 N Y N 109 C2E C81 C Y N 110 C2E N71 N Y N 111 C2E C51 C Y N 112 C2E C61 C N N 113 C2E O61 O N N 114 C2E N11 N N N 115 C2E C21 C N N 116 C2E N21 N N N 117 C2E N31 N N N 118 C2E C41 C Y N 119 C2E HO2P H N N 120 C2E "H5'1" H N N 121 C2E "H5'2" H N N 122 C2E "H4'" H N N 123 C2E "H3'" H N N 124 C2E "H2'" H N N 125 C2E "HO2'" H N N 126 C2E "H1'" H N N 127 C2E H8 H N N 128 C2E HN1 H N N 129 C2E HN21 H N N 130 C2E HN22 H N N 131 C2E HO21 H N N 132 C2E H511 H N N 133 C2E H512 H N N 134 C2E H4A H N N 135 C2E H3A H N N 136 C2E H2A H N N 137 C2E HO2A H N N 138 C2E H1A H N N 139 C2E H81 H N N 140 C2E HN11 H N N 141 C2E HN24 H N N 142 C2E HN23 H N N 143 CYS N N N N 144 CYS CA C N R 145 CYS C C N N 146 CYS O O N N 147 CYS CB C N N 148 CYS SG S N N 149 CYS OXT O N N 150 CYS H H N N 151 CYS H2 H N N 152 CYS HA H N N 153 CYS HB2 H N N 154 CYS HB3 H N N 155 CYS HG H N N 156 CYS HXT H N N 157 GLN N N N N 158 GLN CA C N S 159 GLN C C N N 160 GLN O O N N 161 GLN CB C N N 162 GLN CG C N N 163 GLN CD C N N 164 GLN OE1 O N N 165 GLN NE2 N N N 166 GLN OXT O N N 167 GLN H H N N 168 GLN H2 H N N 169 GLN HA H N N 170 GLN HB2 H N N 171 GLN HB3 H N N 172 GLN HG2 H N N 173 GLN HG3 H N N 174 GLN HE21 H N N 175 GLN HE22 H N N 176 GLN HXT H N N 177 GLU N N N N 178 GLU CA C N S 179 GLU C C N N 180 GLU O O N N 181 GLU CB C N N 182 GLU CG C N N 183 GLU CD C N N 184 GLU OE1 O N N 185 GLU OE2 O N N 186 GLU OXT O N N 187 GLU H H N N 188 GLU H2 H N N 189 GLU HA H N N 190 GLU HB2 H N N 191 GLU HB3 H N N 192 GLU HG2 H N N 193 GLU HG3 H N N 194 GLU HE2 H N N 195 GLU HXT H N N 196 GLY N N N N 197 GLY CA C N N 198 GLY C C N N 199 GLY O O N N 200 GLY OXT O N N 201 GLY H H N N 202 GLY H2 H N N 203 GLY HA2 H N N 204 GLY HA3 H N N 205 GLY HXT H N N 206 HIS N N N N 207 HIS CA C N S 208 HIS C C N N 209 HIS O O N N 210 HIS CB C N N 211 HIS CG C Y N 212 HIS ND1 N Y N 213 HIS CD2 C Y N 214 HIS CE1 C Y N 215 HIS NE2 N Y N 216 HIS OXT O N N 217 HIS H H N N 218 HIS H2 H N N 219 HIS HA H N N 220 HIS HB2 H N N 221 HIS HB3 H N N 222 HIS HD1 H N N 223 HIS HD2 H N N 224 HIS HE1 H N N 225 HIS HE2 H N N 226 HIS HXT H N N 227 HOH O O N N 228 HOH H1 H N N 229 HOH H2 H N N 230 ILE N N N N 231 ILE CA C N S 232 ILE C C N N 233 ILE O O N N 234 ILE CB C N S 235 ILE CG1 C N N 236 ILE CG2 C N N 237 ILE CD1 C N N 238 ILE OXT O N N 239 ILE H H N N 240 ILE H2 H N N 241 ILE HA H N N 242 ILE HB H N N 243 ILE HG12 H N N 244 ILE HG13 H N N 245 ILE HG21 H N N 246 ILE HG22 H N N 247 ILE HG23 H N N 248 ILE HD11 H N N 249 ILE HD12 H N N 250 ILE HD13 H N N 251 ILE HXT H N N 252 LEU N N N N 253 LEU CA C N S 254 LEU C C N N 255 LEU O O N N 256 LEU CB C N N 257 LEU CG C N N 258 LEU CD1 C N N 259 LEU CD2 C N N 260 LEU OXT O N N 261 LEU H H N N 262 LEU H2 H N N 263 LEU HA H N N 264 LEU HB2 H N N 265 LEU HB3 H N N 266 LEU HG H N N 267 LEU HD11 H N N 268 LEU HD12 H N N 269 LEU HD13 H N N 270 LEU HD21 H N N 271 LEU HD22 H N N 272 LEU HD23 H N N 273 LEU HXT H N N 274 LYS N N N N 275 LYS CA C N S 276 LYS C C N N 277 LYS O O N N 278 LYS CB C N N 279 LYS CG C N N 280 LYS CD C N N 281 LYS CE C N N 282 LYS NZ N N N 283 LYS OXT O N N 284 LYS H H N N 285 LYS H2 H N N 286 LYS HA H N N 287 LYS HB2 H N N 288 LYS HB3 H N N 289 LYS HG2 H N N 290 LYS HG3 H N N 291 LYS HD2 H N N 292 LYS HD3 H N N 293 LYS HE2 H N N 294 LYS HE3 H N N 295 LYS HZ1 H N N 296 LYS HZ2 H N N 297 LYS HZ3 H N N 298 LYS HXT H N N 299 MET N N N N 300 MET CA C N S 301 MET C C N N 302 MET O O N N 303 MET CB C N N 304 MET CG C N N 305 MET SD S N N 306 MET CE C N N 307 MET OXT O N N 308 MET H H N N 309 MET H2 H N N 310 MET HA H N N 311 MET HB2 H N N 312 MET HB3 H N N 313 MET HG2 H N N 314 MET HG3 H N N 315 MET HE1 H N N 316 MET HE2 H N N 317 MET HE3 H N N 318 MET HXT H N N 319 MG MG MG N N 320 PHE N N N N 321 PHE CA C N S 322 PHE C C N N 323 PHE O O N N 324 PHE CB C N N 325 PHE CG C Y N 326 PHE CD1 C Y N 327 PHE CD2 C Y N 328 PHE CE1 C Y N 329 PHE CE2 C Y N 330 PHE CZ C Y N 331 PHE OXT O N N 332 PHE H H N N 333 PHE H2 H N N 334 PHE HA H N N 335 PHE HB2 H N N 336 PHE HB3 H N N 337 PHE HD1 H N N 338 PHE HD2 H N N 339 PHE HE1 H N N 340 PHE HE2 H N N 341 PHE HZ H N N 342 PHE HXT H N N 343 PRO N N N N 344 PRO CA C N S 345 PRO C C N N 346 PRO O O N N 347 PRO CB C N N 348 PRO CG C N N 349 PRO CD C N N 350 PRO OXT O N N 351 PRO H H N N 352 PRO HA H N N 353 PRO HB2 H N N 354 PRO HB3 H N N 355 PRO HG2 H N N 356 PRO HG3 H N N 357 PRO HD2 H N N 358 PRO HD3 H N N 359 PRO HXT H N N 360 SER N N N N 361 SER CA C N S 362 SER C C N N 363 SER O O N N 364 SER CB C N N 365 SER OG O N N 366 SER OXT O N N 367 SER H H N N 368 SER H2 H N N 369 SER HA H N N 370 SER HB2 H N N 371 SER HB3 H N N 372 SER HG H N N 373 SER HXT H N N 374 TAR O1 O N N 375 TAR O11 O N N 376 TAR C1 C N N 377 TAR C2 C N S 378 TAR O2 O N N 379 TAR C3 C N S 380 TAR O3 O N N 381 TAR C4 C N N 382 TAR O4 O N N 383 TAR O41 O N N 384 TAR HO1 H N N 385 TAR H2 H N N 386 TAR HO2 H N N 387 TAR H3 H N N 388 TAR HO3 H N N 389 TAR HO4 H N N 390 THR N N N N 391 THR CA C N S 392 THR C C N N 393 THR O O N N 394 THR CB C N R 395 THR OG1 O N N 396 THR CG2 C N N 397 THR OXT O N N 398 THR H H N N 399 THR H2 H N N 400 THR HA H N N 401 THR HB H N N 402 THR HG1 H N N 403 THR HG21 H N N 404 THR HG22 H N N 405 THR HG23 H N N 406 THR HXT H N N 407 TRP N N N N 408 TRP CA C N S 409 TRP C C N N 410 TRP O O N N 411 TRP CB C N N 412 TRP CG C Y N 413 TRP CD1 C Y N 414 TRP CD2 C Y N 415 TRP NE1 N Y N 416 TRP CE2 C Y N 417 TRP CE3 C Y N 418 TRP CZ2 C Y N 419 TRP CZ3 C Y N 420 TRP CH2 C Y N 421 TRP OXT O N N 422 TRP H H N N 423 TRP H2 H N N 424 TRP HA H N N 425 TRP HB2 H N N 426 TRP HB3 H N N 427 TRP HD1 H N N 428 TRP HE1 H N N 429 TRP HE3 H N N 430 TRP HZ2 H N N 431 TRP HZ3 H N N 432 TRP HH2 H N N 433 TRP HXT H N N 434 TYR N N N N 435 TYR CA C N S 436 TYR C C N N 437 TYR O O N N 438 TYR CB C N N 439 TYR CG C Y N 440 TYR CD1 C Y N 441 TYR CD2 C Y N 442 TYR CE1 C Y N 443 TYR CE2 C Y N 444 TYR CZ C Y N 445 TYR OH O N N 446 TYR OXT O N N 447 TYR H H N N 448 TYR H2 H N N 449 TYR HA H N N 450 TYR HB2 H N N 451 TYR HB3 H N N 452 TYR HD1 H N N 453 TYR HD2 H N N 454 TYR HE1 H N N 455 TYR HE2 H N N 456 TYR HH H N N 457 TYR HXT H N N 458 VAL N N N N 459 VAL CA C N S 460 VAL C C N N 461 VAL O O N N 462 VAL CB C N N 463 VAL CG1 C N N 464 VAL CG2 C N N 465 VAL OXT O N N 466 VAL H H N N 467 VAL H2 H N N 468 VAL HA H N N 469 VAL HB H N N 470 VAL HG11 H N N 471 VAL HG12 H N N 472 VAL HG13 H N N 473 VAL HG21 H N N 474 VAL HG22 H N N 475 VAL HG23 H N N 476 VAL HXT H N N 477 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 C2E P1 O2P sing N N 70 C2E O1P P1 doub N N 71 C2E "O5'" P1 sing N N 72 C2E "C5'" "O5'" sing N N 73 C2E "C4'" "O4'" sing N N 74 C2E "C4'" "C5'" sing N N 75 C2E "C3'" "C4'" sing N N 76 C2E "O3'" P11 sing N N 77 C2E "O3'" "C3'" sing N N 78 C2E "C2'" "C3'" sing N N 79 C2E "C2'" "C1'" sing N N 80 C2E "O2'" "C2'" sing N N 81 C2E "C1'" "O4'" sing N N 82 C2E "C1'" N9 sing N N 83 C2E N9 C4 sing Y N 84 C2E N9 C8 sing Y N 85 C2E C8 N7 doub Y N 86 C2E C5 N7 sing Y N 87 C2E C5 C6 sing N N 88 C2E C6 O6 doub N N 89 C2E N1 C6 sing N N 90 C2E C2 N1 sing N N 91 C2E N2 C2 sing N N 92 C2E N3 C2 doub N N 93 C2E N3 C4 sing N N 94 C2E C4 C5 doub Y N 95 C2E P11 O21 sing N N 96 C2E P11 O5A sing N N 97 C2E O11 P11 doub N N 98 C2E C5A O5A sing N N 99 C2E C5A C4A sing N N 100 C2E C4A O4A sing N N 101 C2E C4A C3A sing N N 102 C2E O4A C1A sing N N 103 C2E C3A C2A sing N N 104 C2E O3A C3A sing N N 105 C2E O3A P1 sing N N 106 C2E C2A O2A sing N N 107 C2E C1A C2A sing N N 108 C2E C1A N91 sing N N 109 C2E N91 C41 sing Y N 110 C2E C81 N71 doub Y N 111 C2E C81 N91 sing Y N 112 C2E N71 C51 sing Y N 113 C2E C51 C41 doub Y N 114 C2E C51 C61 sing N N 115 C2E C61 O61 doub N N 116 C2E C61 N11 sing N N 117 C2E C21 N11 sing N N 118 C2E C21 N21 sing N N 119 C2E N31 C21 doub N N 120 C2E C41 N31 sing N N 121 C2E O2P HO2P sing N N 122 C2E "C5'" "H5'1" sing N N 123 C2E "C5'" "H5'2" sing N N 124 C2E "C4'" "H4'" sing N N 125 C2E "C3'" "H3'" sing N N 126 C2E "C2'" "H2'" sing N N 127 C2E "O2'" "HO2'" sing N N 128 C2E "C1'" "H1'" sing N N 129 C2E C8 H8 sing N N 130 C2E N1 HN1 sing N N 131 C2E N2 HN21 sing N N 132 C2E N2 HN22 sing N N 133 C2E O21 HO21 sing N N 134 C2E C5A H511 sing N N 135 C2E C5A H512 sing N N 136 C2E C4A H4A sing N N 137 C2E C3A H3A sing N N 138 C2E C2A H2A sing N N 139 C2E O2A HO2A sing N N 140 C2E C1A H1A sing N N 141 C2E C81 H81 sing N N 142 C2E N11 HN11 sing N N 143 C2E N21 HN24 sing N N 144 C2E N21 HN23 sing N N 145 CYS N CA sing N N 146 CYS N H sing N N 147 CYS N H2 sing N N 148 CYS CA C sing N N 149 CYS CA CB sing N N 150 CYS CA HA sing N N 151 CYS C O doub N N 152 CYS C OXT sing N N 153 CYS CB SG sing N N 154 CYS CB HB2 sing N N 155 CYS CB HB3 sing N N 156 CYS SG HG sing N N 157 CYS OXT HXT sing N N 158 GLN N CA sing N N 159 GLN N H sing N N 160 GLN N H2 sing N N 161 GLN CA C sing N N 162 GLN CA CB sing N N 163 GLN CA HA sing N N 164 GLN C O doub N N 165 GLN C OXT sing N N 166 GLN CB CG sing N N 167 GLN CB HB2 sing N N 168 GLN CB HB3 sing N N 169 GLN CG CD sing N N 170 GLN CG HG2 sing N N 171 GLN CG HG3 sing N N 172 GLN CD OE1 doub N N 173 GLN CD NE2 sing N N 174 GLN NE2 HE21 sing N N 175 GLN NE2 HE22 sing N N 176 GLN OXT HXT sing N N 177 GLU N CA sing N N 178 GLU N H sing N N 179 GLU N H2 sing N N 180 GLU CA C sing N N 181 GLU CA CB sing N N 182 GLU CA HA sing N N 183 GLU C O doub N N 184 GLU C OXT sing N N 185 GLU CB CG sing N N 186 GLU CB HB2 sing N N 187 GLU CB HB3 sing N N 188 GLU CG CD sing N N 189 GLU CG HG2 sing N N 190 GLU CG HG3 sing N N 191 GLU CD OE1 doub N N 192 GLU CD OE2 sing N N 193 GLU OE2 HE2 sing N N 194 GLU OXT HXT sing N N 195 GLY N CA sing N N 196 GLY N H sing N N 197 GLY N H2 sing N N 198 GLY CA C sing N N 199 GLY CA HA2 sing N N 200 GLY CA HA3 sing N N 201 GLY C O doub N N 202 GLY C OXT sing N N 203 GLY OXT HXT sing N N 204 HIS N CA sing N N 205 HIS N H sing N N 206 HIS N H2 sing N N 207 HIS CA C sing N N 208 HIS CA CB sing N N 209 HIS CA HA sing N N 210 HIS C O doub N N 211 HIS C OXT sing N N 212 HIS CB CG sing N N 213 HIS CB HB2 sing N N 214 HIS CB HB3 sing N N 215 HIS CG ND1 sing Y N 216 HIS CG CD2 doub Y N 217 HIS ND1 CE1 doub Y N 218 HIS ND1 HD1 sing N N 219 HIS CD2 NE2 sing Y N 220 HIS CD2 HD2 sing N N 221 HIS CE1 NE2 sing Y N 222 HIS CE1 HE1 sing N N 223 HIS NE2 HE2 sing N N 224 HIS OXT HXT sing N N 225 HOH O H1 sing N N 226 HOH O H2 sing N N 227 ILE N CA sing N N 228 ILE N H sing N N 229 ILE N H2 sing N N 230 ILE CA C sing N N 231 ILE CA CB sing N N 232 ILE CA HA sing N N 233 ILE C O doub N N 234 ILE C OXT sing N N 235 ILE CB CG1 sing N N 236 ILE CB CG2 sing N N 237 ILE CB HB sing N N 238 ILE CG1 CD1 sing N N 239 ILE CG1 HG12 sing N N 240 ILE CG1 HG13 sing N N 241 ILE CG2 HG21 sing N N 242 ILE CG2 HG22 sing N N 243 ILE CG2 HG23 sing N N 244 ILE CD1 HD11 sing N N 245 ILE CD1 HD12 sing N N 246 ILE CD1 HD13 sing N N 247 ILE OXT HXT sing N N 248 LEU N CA sing N N 249 LEU N H sing N N 250 LEU N H2 sing N N 251 LEU CA C sing N N 252 LEU CA CB sing N N 253 LEU CA HA sing N N 254 LEU C O doub N N 255 LEU C OXT sing N N 256 LEU CB CG sing N N 257 LEU CB HB2 sing N N 258 LEU CB HB3 sing N N 259 LEU CG CD1 sing N N 260 LEU CG CD2 sing N N 261 LEU CG HG sing N N 262 LEU CD1 HD11 sing N N 263 LEU CD1 HD12 sing N N 264 LEU CD1 HD13 sing N N 265 LEU CD2 HD21 sing N N 266 LEU CD2 HD22 sing N N 267 LEU CD2 HD23 sing N N 268 LEU OXT HXT sing N N 269 LYS N CA sing N N 270 LYS N H sing N N 271 LYS N H2 sing N N 272 LYS CA C sing N N 273 LYS CA CB sing N N 274 LYS CA HA sing N N 275 LYS C O doub N N 276 LYS C OXT sing N N 277 LYS CB CG sing N N 278 LYS CB HB2 sing N N 279 LYS CB HB3 sing N N 280 LYS CG CD sing N N 281 LYS CG HG2 sing N N 282 LYS CG HG3 sing N N 283 LYS CD CE sing N N 284 LYS CD HD2 sing N N 285 LYS CD HD3 sing N N 286 LYS CE NZ sing N N 287 LYS CE HE2 sing N N 288 LYS CE HE3 sing N N 289 LYS NZ HZ1 sing N N 290 LYS NZ HZ2 sing N N 291 LYS NZ HZ3 sing N N 292 LYS OXT HXT sing N N 293 MET N CA sing N N 294 MET N H sing N N 295 MET N H2 sing N N 296 MET CA C sing N N 297 MET CA CB sing N N 298 MET CA HA sing N N 299 MET C O doub N N 300 MET C OXT sing N N 301 MET CB CG sing N N 302 MET CB HB2 sing N N 303 MET CB HB3 sing N N 304 MET CG SD sing N N 305 MET CG HG2 sing N N 306 MET CG HG3 sing N N 307 MET SD CE sing N N 308 MET CE HE1 sing N N 309 MET CE HE2 sing N N 310 MET CE HE3 sing N N 311 MET OXT HXT sing N N 312 PHE N CA sing N N 313 PHE N H sing N N 314 PHE N H2 sing N N 315 PHE CA C sing N N 316 PHE CA CB sing N N 317 PHE CA HA sing N N 318 PHE C O doub N N 319 PHE C OXT sing N N 320 PHE CB CG sing N N 321 PHE CB HB2 sing N N 322 PHE CB HB3 sing N N 323 PHE CG CD1 doub Y N 324 PHE CG CD2 sing Y N 325 PHE CD1 CE1 sing Y N 326 PHE CD1 HD1 sing N N 327 PHE CD2 CE2 doub Y N 328 PHE CD2 HD2 sing N N 329 PHE CE1 CZ doub Y N 330 PHE CE1 HE1 sing N N 331 PHE CE2 CZ sing Y N 332 PHE CE2 HE2 sing N N 333 PHE CZ HZ sing N N 334 PHE OXT HXT sing N N 335 PRO N CA sing N N 336 PRO N CD sing N N 337 PRO N H sing N N 338 PRO CA C sing N N 339 PRO CA CB sing N N 340 PRO CA HA sing N N 341 PRO C O doub N N 342 PRO C OXT sing N N 343 PRO CB CG sing N N 344 PRO CB HB2 sing N N 345 PRO CB HB3 sing N N 346 PRO CG CD sing N N 347 PRO CG HG2 sing N N 348 PRO CG HG3 sing N N 349 PRO CD HD2 sing N N 350 PRO CD HD3 sing N N 351 PRO OXT HXT sing N N 352 SER N CA sing N N 353 SER N H sing N N 354 SER N H2 sing N N 355 SER CA C sing N N 356 SER CA CB sing N N 357 SER CA HA sing N N 358 SER C O doub N N 359 SER C OXT sing N N 360 SER CB OG sing N N 361 SER CB HB2 sing N N 362 SER CB HB3 sing N N 363 SER OG HG sing N N 364 SER OXT HXT sing N N 365 TAR O1 C1 doub N N 366 TAR O11 C1 sing N N 367 TAR O11 HO1 sing N N 368 TAR C1 C2 sing N N 369 TAR C2 O2 sing N N 370 TAR C2 C3 sing N N 371 TAR C2 H2 sing N N 372 TAR O2 HO2 sing N N 373 TAR C3 O3 sing N N 374 TAR C3 C4 sing N N 375 TAR C3 H3 sing N N 376 TAR O3 HO3 sing N N 377 TAR C4 O4 doub N N 378 TAR C4 O41 sing N N 379 TAR O41 HO4 sing N N 380 THR N CA sing N N 381 THR N H sing N N 382 THR N H2 sing N N 383 THR CA C sing N N 384 THR CA CB sing N N 385 THR CA HA sing N N 386 THR C O doub N N 387 THR C OXT sing N N 388 THR CB OG1 sing N N 389 THR CB CG2 sing N N 390 THR CB HB sing N N 391 THR OG1 HG1 sing N N 392 THR CG2 HG21 sing N N 393 THR CG2 HG22 sing N N 394 THR CG2 HG23 sing N N 395 THR OXT HXT sing N N 396 TRP N CA sing N N 397 TRP N H sing N N 398 TRP N H2 sing N N 399 TRP CA C sing N N 400 TRP CA CB sing N N 401 TRP CA HA sing N N 402 TRP C O doub N N 403 TRP C OXT sing N N 404 TRP CB CG sing N N 405 TRP CB HB2 sing N N 406 TRP CB HB3 sing N N 407 TRP CG CD1 doub Y N 408 TRP CG CD2 sing Y N 409 TRP CD1 NE1 sing Y N 410 TRP CD1 HD1 sing N N 411 TRP CD2 CE2 doub Y N 412 TRP CD2 CE3 sing Y N 413 TRP NE1 CE2 sing Y N 414 TRP NE1 HE1 sing N N 415 TRP CE2 CZ2 sing Y N 416 TRP CE3 CZ3 doub Y N 417 TRP CE3 HE3 sing N N 418 TRP CZ2 CH2 doub Y N 419 TRP CZ2 HZ2 sing N N 420 TRP CZ3 CH2 sing Y N 421 TRP CZ3 HZ3 sing N N 422 TRP CH2 HH2 sing N N 423 TRP OXT HXT sing N N 424 TYR N CA sing N N 425 TYR N H sing N N 426 TYR N H2 sing N N 427 TYR CA C sing N N 428 TYR CA CB sing N N 429 TYR CA HA sing N N 430 TYR C O doub N N 431 TYR C OXT sing N N 432 TYR CB CG sing N N 433 TYR CB HB2 sing N N 434 TYR CB HB3 sing N N 435 TYR CG CD1 doub Y N 436 TYR CG CD2 sing Y N 437 TYR CD1 CE1 sing Y N 438 TYR CD1 HD1 sing N N 439 TYR CD2 CE2 doub Y N 440 TYR CD2 HD2 sing N N 441 TYR CE1 CZ doub Y N 442 TYR CE1 HE1 sing N N 443 TYR CE2 CZ sing Y N 444 TYR CE2 HE2 sing N N 445 TYR CZ OH sing N N 446 TYR OH HH sing N N 447 TYR OXT HXT sing N N 448 VAL N CA sing N N 449 VAL N H sing N N 450 VAL N H2 sing N N 451 VAL CA C sing N N 452 VAL CA CB sing N N 453 VAL CA HA sing N N 454 VAL C O doub N N 455 VAL C OXT sing N N 456 VAL CB CG1 sing N N 457 VAL CB CG2 sing N N 458 VAL CB HB sing N N 459 VAL CG1 HG11 sing N N 460 VAL CG1 HG12 sing N N 461 VAL CG1 HG13 sing N N 462 VAL CG2 HG21 sing N N 463 VAL CG2 HG22 sing N N 464 VAL CG2 HG23 sing N N 465 VAL OXT HXT sing N N 466 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) ; C2E 3 'MAGNESIUM ION' MG 4 'D(-)-TARTARIC ACID' TAR 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1W25 _pdbx_initial_refinement_model.details 'PDB ENTRY 1W25' #