HEADER HYDROLASE/DNA 22-SEP-11 3TWM TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA FPG COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.2.23; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*AP*GP*CP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*TP*AP*CP*C)- COMPND 8 3'; COMPND 9 CHAIN: C, E; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: TETRAHYDROFURAN CONTAINING DNA; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*TP*GP*GP*TP*AP*GP*AP*CP*GP*TP*GP*GP*AP*CP*GP*C)-3'; COMPND 14 CHAIN: D, F; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS, THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: FPG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: PURCHASED FROM OPERON TECHNOLOGY; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: PURCHASED FROM OPERON TECHNOLOGY KEYWDS HELIX TWO TURNS HELIX, ZINC-LESS FINGER, HYDROLASE, DNA DAMAGE, DNA KEYWDS 2 REPAIR, DNA-BINDING, GLYCOSIDASE, LYASE, MULTIFUNCTIONAL ENZYME, DNA KEYWDS 3 CONTAINING STABLE ANALOG OF ABASIC SITE, TETRAHYDRO FURAN, KEYWDS 4 HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.DUCLOS,P.ALLER,S.S.WALLACE,S.DOUBLIE REVDAT 3 13-SEP-23 3TWM 1 SEQADV LINK REVDAT 2 29-AUG-12 3TWM 1 JRNL REVDAT 1 25-JUL-12 3TWM 0 JRNL AUTH S.DUCLOS,P.ALLER,P.JARUGA,M.DIZDAROGLU,S.S.WALLACE,S.DOUBLIE JRNL TITL STRUCTURAL AND BIOCHEMICAL STUDIES OF A PLANT JRNL TITL 2 FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE REVEAL WHY EUKARYOTIC JRNL TITL 3 FPG GLYCOSYLASES DO NOT EXCISE 8-OXOGUANINE. JRNL REF DNA REPAIR V. 11 714 2012 JRNL REFN ISSN 1568-7864 JRNL PMID 22789755 JRNL DOI 10.1016/J.DNAREP.2012.06.004 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 21101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2078 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4113 REMARK 3 NUCLEIC ACID ATOMS : 1246 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.08700 REMARK 3 B22 (A**2) : 5.55000 REMARK 3 B33 (A**2) : -15.63700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.377 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.382 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.924 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.129 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 56.14 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR:PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CNS_TOPPAR:DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR:WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CNS_TOPPAR:ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TWM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.12 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21150 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.958 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.53800 REMARK 200 R SYM FOR SHELL (I) : 0.53800 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3TWL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (V/V) PEG 2000 MME, 100 MM KBR, REMARK 280 AND 100 MM SODIUM ACETATE PH 5.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.20000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.74000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.28500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.74000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.20000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.28500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 86 REMARK 465 VAL A 87 REMARK 465 ALA A 88 REMARK 465 VAL A 89 REMARK 465 THR A 90 REMARK 465 LYS A 91 REMARK 465 TYR A 92 REMARK 465 LYS A 93 REMARK 465 ARG A 94 REMARK 465 SER A 95 REMARK 465 ALA A 96 REMARK 465 VAL A 97 REMARK 465 LYS A 98 REMARK 465 ASP A 99 REMARK 465 SER A 100 REMARK 465 GLU A 101 REMARK 465 GLU A 102 REMARK 465 GLY A 280 REMARK 465 LYS A 281 REMARK 465 ASP A 282 REMARK 465 ALA A 283 REMARK 465 GLU A 284 REMARK 465 LYS A 285 REMARK 465 ALA A 286 REMARK 465 ALA A 287 REMARK 465 LYS A 288 REMARK 465 VAL A 289 REMARK 465 ARG A 290 REMARK 465 PRO A 291 REMARK 465 ALA A 292 REMARK 465 LYS A 293 REMARK 465 ARG A 294 REMARK 465 GLY A 295 REMARK 465 VAL A 296 REMARK 465 LYS A 297 REMARK 465 PRO A 298 REMARK 465 LYS A 299 REMARK 465 GLU A 300 REMARK 465 ASP A 301 REMARK 465 ASP A 302 REMARK 465 GLY A 303 REMARK 465 ASP A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 MET B 1 REMARK 465 GLY B 86 REMARK 465 VAL B 87 REMARK 465 ALA B 88 REMARK 465 VAL B 89 REMARK 465 THR B 90 REMARK 465 LYS B 91 REMARK 465 TYR B 92 REMARK 465 LYS B 93 REMARK 465 ARG B 94 REMARK 465 SER B 95 REMARK 465 ALA B 96 REMARK 465 VAL B 97 REMARK 465 LYS B 98 REMARK 465 ASP B 99 REMARK 465 SER B 100 REMARK 465 GLU B 101 REMARK 465 GLU B 102 REMARK 465 GLY B 280 REMARK 465 LYS B 281 REMARK 465 ASP B 282 REMARK 465 ALA B 283 REMARK 465 GLU B 284 REMARK 465 LYS B 285 REMARK 465 ALA B 286 REMARK 465 ALA B 287 REMARK 465 LYS B 288 REMARK 465 VAL B 289 REMARK 465 ARG B 290 REMARK 465 PRO B 291 REMARK 465 ALA B 292 REMARK 465 LYS B 293 REMARK 465 ARG B 294 REMARK 465 GLY B 295 REMARK 465 VAL B 296 REMARK 465 LYS B 297 REMARK 465 PRO B 298 REMARK 465 LYS B 299 REMARK 465 GLU B 300 REMARK 465 ASP B 301 REMARK 465 ASP B 302 REMARK 465 GLY B 303 REMARK 465 ASP B 304 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 465 HIS B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 465 HIS B 310 REMARK 465 DC D 16 REMARK 465 DC F 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 279 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 38 145.42 -177.35 REMARK 500 LYS A 60 40.42 -86.91 REMARK 500 SER A 68 138.61 -171.72 REMARK 500 PRO A 104 108.11 -32.66 REMARK 500 ASP A 115 2.08 -55.24 REMARK 500 ASP A 124 75.15 -165.70 REMARK 500 LYS A 166 0.24 -55.60 REMARK 500 TYR A 180 -73.29 -63.30 REMARK 500 ALA A 231 18.83 56.74 REMARK 500 SER A 233 -32.71 -35.43 REMARK 500 ILE B 38 152.02 177.67 REMARK 500 LYS B 60 32.25 -85.46 REMARK 500 SER B 68 147.34 -175.62 REMARK 500 ASP B 116 34.35 -77.56 REMARK 500 ASP B 124 66.16 -154.63 REMARK 500 LYS B 125 -0.69 -53.12 REMARK 500 ASN B 136 76.54 -171.47 REMARK 500 ALA B 150 -18.42 -47.86 REMARK 500 ASP B 177 99.49 -69.02 REMARK 500 GLN B 195 7.36 -66.97 REMARK 500 ALA B 196 12.99 -141.57 REMARK 500 ARG B 197 75.27 39.90 REMARK 500 SER B 206 3.54 -61.51 REMARK 500 SER B 238 -32.76 -39.08 REMARK 500 THR B 263 56.45 -116.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA C 22 0.09 SIDE CHAIN REMARK 500 DA E 22 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TWK RELATED DB: PDB REMARK 900 RELATED ID: 3TWL RELATED DB: PDB DBREF 3TWM A 1 304 UNP Q9SBB4 Q9SBB4_ARATH 1 304 DBREF 3TWM B 1 304 UNP Q9SBB4 Q9SBB4_ARATH 1 304 DBREF 3TWM C 15 30 PDB 3TWM 3TWM 15 30 DBREF 3TWM E 15 30 PDB 3TWM 3TWM 15 30 DBREF 3TWM D 1 16 PDB 3TWM 3TWM 1 16 DBREF 3TWM F 1 16 PDB 3TWM 3TWM 1 16 SEQADV 3TWM HIS A 305 UNP Q9SBB4 EXPRESSION TAG SEQADV 3TWM HIS A 306 UNP Q9SBB4 EXPRESSION TAG SEQADV 3TWM HIS A 307 UNP Q9SBB4 EXPRESSION TAG SEQADV 3TWM HIS A 308 UNP Q9SBB4 EXPRESSION TAG SEQADV 3TWM HIS A 309 UNP Q9SBB4 EXPRESSION TAG SEQADV 3TWM HIS A 310 UNP Q9SBB4 EXPRESSION TAG SEQADV 3TWM HIS B 305 UNP Q9SBB4 EXPRESSION TAG SEQADV 3TWM HIS B 306 UNP Q9SBB4 EXPRESSION TAG SEQADV 3TWM HIS B 307 UNP Q9SBB4 EXPRESSION TAG SEQADV 3TWM HIS B 308 UNP Q9SBB4 EXPRESSION TAG SEQADV 3TWM HIS B 309 UNP Q9SBB4 EXPRESSION TAG SEQADV 3TWM HIS B 310 UNP Q9SBB4 EXPRESSION TAG SEQRES 1 A 310 MET PRO GLU LEU PRO GLU VAL GLU ALA ALA ARG ARG ALA SEQRES 2 A 310 ILE GLU GLU ASN CYS LEU GLY LYS LYS ILE LYS ARG VAL SEQRES 3 A 310 ILE ILE ALA ASP ASP ASN LYS VAL ILE HIS GLY ILE SER SEQRES 4 A 310 PRO SER ASP PHE GLN THR SER ILE LEU GLY LYS THR ILE SEQRES 5 A 310 ILE SER ALA ARG ARG LYS GLY LYS ASN LEU TRP LEU GLU SEQRES 6 A 310 LEU ASP SER PRO PRO PHE PRO SER PHE GLN PHE GLY MET SEQRES 7 A 310 ALA GLY ALA ILE TYR ILE LYS GLY VAL ALA VAL THR LYS SEQRES 8 A 310 TYR LYS ARG SER ALA VAL LYS ASP SER GLU GLU TRP PRO SEQRES 9 A 310 SER LYS TYR SER LYS PHE PHE VAL GLU LEU ASP ASP GLY SEQRES 10 A 310 LEU GLU LEU SER PHE THR ASP LYS ARG ARG PHE ALA LYS SEQRES 11 A 310 VAL ARG LEU LEU ALA ASN PRO THR SER VAL SER PRO ILE SEQRES 12 A 310 SER GLU LEU GLY PRO ASP ALA LEU LEU GLU PRO MET THR SEQRES 13 A 310 VAL ASP GLU PHE ALA GLU SER LEU ALA LYS LYS LYS ILE SEQRES 14 A 310 THR ILE LYS PRO LEU LEU LEU ASP GLN GLY TYR ILE SER SEQRES 15 A 310 GLY ILE GLY ASN TRP ILE ALA ASP GLU VAL LEU TYR GLN SEQRES 16 A 310 ALA ARG ILE HIS PRO LEU GLN THR ALA SER SER LEU SER SEQRES 17 A 310 LYS GLU GLN CYS GLU ALA LEU HIS THR SER ILE LYS GLU SEQRES 18 A 310 VAL ILE GLU LYS ALA VAL GLU VAL ASP ALA ASP SER SER SEQRES 19 A 310 GLN PHE PRO SER ASN TRP ILE PHE HIS ASN ARG GLU LYS SEQRES 20 A 310 LYS PRO GLY LYS ALA PHE VAL ASP GLY LYS LYS ILE ASP SEQRES 21 A 310 PHE ILE THR ALA GLY GLY ARG THR THR ALA TYR VAL PRO SEQRES 22 A 310 GLU LEU GLN LYS LEU TYR GLY LYS ASP ALA GLU LYS ALA SEQRES 23 A 310 ALA LYS VAL ARG PRO ALA LYS ARG GLY VAL LYS PRO LYS SEQRES 24 A 310 GLU ASP ASP GLY ASP HIS HIS HIS HIS HIS HIS SEQRES 1 B 310 MET PRO GLU LEU PRO GLU VAL GLU ALA ALA ARG ARG ALA SEQRES 2 B 310 ILE GLU GLU ASN CYS LEU GLY LYS LYS ILE LYS ARG VAL SEQRES 3 B 310 ILE ILE ALA ASP ASP ASN LYS VAL ILE HIS GLY ILE SER SEQRES 4 B 310 PRO SER ASP PHE GLN THR SER ILE LEU GLY LYS THR ILE SEQRES 5 B 310 ILE SER ALA ARG ARG LYS GLY LYS ASN LEU TRP LEU GLU SEQRES 6 B 310 LEU ASP SER PRO PRO PHE PRO SER PHE GLN PHE GLY MET SEQRES 7 B 310 ALA GLY ALA ILE TYR ILE LYS GLY VAL ALA VAL THR LYS SEQRES 8 B 310 TYR LYS ARG SER ALA VAL LYS ASP SER GLU GLU TRP PRO SEQRES 9 B 310 SER LYS TYR SER LYS PHE PHE VAL GLU LEU ASP ASP GLY SEQRES 10 B 310 LEU GLU LEU SER PHE THR ASP LYS ARG ARG PHE ALA LYS SEQRES 11 B 310 VAL ARG LEU LEU ALA ASN PRO THR SER VAL SER PRO ILE SEQRES 12 B 310 SER GLU LEU GLY PRO ASP ALA LEU LEU GLU PRO MET THR SEQRES 13 B 310 VAL ASP GLU PHE ALA GLU SER LEU ALA LYS LYS LYS ILE SEQRES 14 B 310 THR ILE LYS PRO LEU LEU LEU ASP GLN GLY TYR ILE SER SEQRES 15 B 310 GLY ILE GLY ASN TRP ILE ALA ASP GLU VAL LEU TYR GLN SEQRES 16 B 310 ALA ARG ILE HIS PRO LEU GLN THR ALA SER SER LEU SER SEQRES 17 B 310 LYS GLU GLN CYS GLU ALA LEU HIS THR SER ILE LYS GLU SEQRES 18 B 310 VAL ILE GLU LYS ALA VAL GLU VAL ASP ALA ASP SER SER SEQRES 19 B 310 GLN PHE PRO SER ASN TRP ILE PHE HIS ASN ARG GLU LYS SEQRES 20 B 310 LYS PRO GLY LYS ALA PHE VAL ASP GLY LYS LYS ILE ASP SEQRES 21 B 310 PHE ILE THR ALA GLY GLY ARG THR THR ALA TYR VAL PRO SEQRES 22 B 310 GLU LEU GLN LYS LEU TYR GLY LYS ASP ALA GLU LYS ALA SEQRES 23 B 310 ALA LYS VAL ARG PRO ALA LYS ARG GLY VAL LYS PRO LYS SEQRES 24 B 310 GLU ASP ASP GLY ASP HIS HIS HIS HIS HIS HIS SEQRES 1 C 16 DA DG DC DG DT DC DC DA 3DR DG DT DC DT SEQRES 2 C 16 DA DC DC SEQRES 1 D 16 DT DG DG DT DA DG DA DC DG DT DG DG DA SEQRES 2 D 16 DC DG DC SEQRES 1 E 16 DA DG DC DG DT DC DC DA 3DR DG DT DC DT SEQRES 2 E 16 DA DC DC SEQRES 1 F 16 DT DG DG DT DA DG DA DC DG DT DG DG DA SEQRES 2 F 16 DC DG DC HET 3DR C 23 11 HET 3DR E 23 11 HETNAM 3DR 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETSYN 3DR ABASIC DIDEOXYRIBOSE FORMUL 3 3DR 2(C5 H11 O6 P) FORMUL 7 HOH *143(H2 O) HELIX 1 1 GLU A 3 CYS A 18 1 16 HELIX 2 2 SER A 39 LEU A 48 1 10 HELIX 3 3 ASN A 136 VAL A 140 5 5 HELIX 4 4 PRO A 142 LEU A 146 5 5 HELIX 5 5 THR A 156 LYS A 166 1 11 HELIX 6 6 THR A 170 LEU A 176 1 7 HELIX 7 7 GLY A 185 ALA A 196 1 12 HELIX 8 8 SER A 208 VAL A 229 1 22 HELIX 9 9 ASP A 232 PHE A 236 5 5 HELIX 10 10 TRP A 240 ARG A 245 5 6 HELIX 11 11 GLU B 3 CYS B 18 1 16 HELIX 12 12 SER B 39 LEU B 48 1 10 HELIX 13 13 ASN B 136 VAL B 140 5 5 HELIX 14 14 THR B 156 LYS B 167 1 12 HELIX 15 15 THR B 170 ASP B 177 1 8 HELIX 16 16 GLY B 185 GLN B 195 1 11 HELIX 17 17 GLU B 210 VAL B 229 1 20 HELIX 18 18 ASP B 232 PHE B 236 5 5 HELIX 19 19 TRP B 240 ARG B 245 5 6 HELIX 20 20 THR B 263 ARG B 267 5 5 SHEET 1 A 4 ILE A 23 ILE A 28 0 SHEET 2 A 4 SER A 108 LEU A 114 -1 O GLU A 113 N LYS A 24 SHEET 3 A 4 GLU A 119 ASP A 124 -1 O PHE A 122 N LYS A 109 SHEET 4 A 4 GLY A 80 ILE A 84 -1 N TYR A 83 O SER A 121 SHEET 1 B 4 ILE A 52 LYS A 58 0 SHEET 2 B 4 ASN A 61 LEU A 66 -1 O GLU A 65 N ILE A 53 SHEET 3 B 4 PHE A 71 GLN A 75 -1 O PHE A 74 N LEU A 62 SHEET 4 B 4 LYS A 130 LEU A 134 -1 O LEU A 134 N PHE A 71 SHEET 1 C 2 PHE A 253 VAL A 254 0 SHEET 2 C 2 LYS A 257 LYS A 258 -1 O LYS A 257 N VAL A 254 SHEET 1 D 2 ASP A 260 ALA A 264 0 SHEET 2 D 2 ARG A 267 TYR A 271 -1 O TYR A 271 N ASP A 260 SHEET 1 E 4 ILE B 23 ILE B 28 0 SHEET 2 E 4 SER B 108 LEU B 114 -1 O PHE B 111 N ILE B 27 SHEET 3 E 4 GLU B 119 ASP B 124 -1 O PHE B 122 N LYS B 109 SHEET 4 E 4 GLY B 80 LYS B 85 -1 N TYR B 83 O SER B 121 SHEET 1 F 4 ILE B 52 LYS B 58 0 SHEET 2 F 4 ASN B 61 LEU B 66 -1 O GLU B 65 N ILE B 53 SHEET 3 F 4 PHE B 71 GLN B 75 -1 O PHE B 74 N LEU B 62 SHEET 4 F 4 LYS B 130 LEU B 134 -1 O LEU B 134 N PHE B 71 SHEET 1 G 2 PHE B 253 VAL B 254 0 SHEET 2 G 2 LYS B 257 LYS B 258 -1 O LYS B 257 N VAL B 254 SHEET 1 H 2 ASP B 260 ILE B 262 0 SHEET 2 H 2 THR B 269 TYR B 271 -1 O THR B 269 N ILE B 262 LINK O3' DA C 22 P 3DR C 23 1555 1555 1.61 LINK O3' 3DR C 23 P DG C 24 1555 1555 1.60 LINK O3' DA E 22 P 3DR E 23 1555 1555 1.61 LINK O3' 3DR E 23 P DG E 24 1555 1555 1.60 CISPEP 1 PRO A 69 PRO A 70 0 -0.26 CISPEP 2 TRP A 103 PRO A 104 0 0.13 CISPEP 3 SER A 141 PRO A 142 0 -0.05 CISPEP 4 PRO B 69 PRO B 70 0 -0.25 CISPEP 5 TRP B 103 PRO B 104 0 0.94 CISPEP 6 SER B 141 PRO B 142 0 0.12 CRYST1 46.400 98.570 181.480 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021552 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005510 0.00000