HEADER ISOMERASE 22-SEP-11 3TX0 TITLE UNPHOSPHORYLATED BACILLUS CEREUS PHOSPHOPENTOMUTASE IN A P212121 TITLE 2 CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOPENTOMUTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHODEOXYRIBOMUTASE; COMPND 5 EC: 5.4.2.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 GENE: DEOB, BC_4087; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALKALINE PHOSPHATASE SUPERFAMILY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.P.PANOSIAN,D.P.NANNEMAN,B.O.BACHMANN,T.M.IVERSON REVDAT 3 28-FEB-24 3TX0 1 REMARK SEQADV LINK REVDAT 2 21-MAR-12 3TX0 1 JRNL REVDAT 1 29-FEB-12 3TX0 0 JRNL AUTH T.M.IVERSON,T.D.PANOSIAN,W.R.BIRMINGHAM,D.P.NANNEMANN, JRNL AUTH 2 B.O.BACHMANN JRNL TITL MOLECULAR DIFFERENCES BETWEEN A MUTASE AND A PHOSPHATASE: JRNL TITL 2 INVESTIGATIONS OF THE ACTIVATION STEP IN BACILLUS CEREUS JRNL TITL 3 PHOSPHOPENTOMUTASE. JRNL REF BIOCHEMISTRY V. 51 1964 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22329805 JRNL DOI 10.1021/BI201761H REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18370 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 989 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 815 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3064 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.78000 REMARK 3 B22 (A**2) : -6.80000 REMARK 3 B33 (A**2) : 2.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.314 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.233 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.185 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.695 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3126 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4223 ; 1.461 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 390 ; 6.188 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;39.887 ;25.170 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 558 ;18.263 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.468 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 461 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2379 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1937 ; 0.549 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3122 ; 1.051 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1189 ; 1.959 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1101 ; 3.171 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 79 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7504 -4.7935 -18.8926 REMARK 3 T TENSOR REMARK 3 T11: 0.1780 T22: 0.2430 REMARK 3 T33: 0.1821 T12: 0.0123 REMARK 3 T13: -0.0863 T23: -0.0515 REMARK 3 L TENSOR REMARK 3 L11: 2.9721 L22: 2.6211 REMARK 3 L33: 2.8541 L12: -0.7277 REMARK 3 L13: -1.4038 L23: 0.1896 REMARK 3 S TENSOR REMARK 3 S11: -0.1162 S12: -0.2527 S13: 0.3025 REMARK 3 S21: 0.6675 S22: 0.0870 S23: -0.4228 REMARK 3 S31: -0.0280 S32: 0.4841 S33: 0.0292 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 80 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5542 -15.6637 -44.3915 REMARK 3 T TENSOR REMARK 3 T11: 0.0495 T22: 0.3070 REMARK 3 T33: 0.2541 T12: -0.0490 REMARK 3 T13: 0.0388 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.5195 L22: 0.1286 REMARK 3 L33: 8.5872 L12: -0.1511 REMARK 3 L13: 2.6739 L23: -0.8711 REMARK 3 S TENSOR REMARK 3 S11: -0.1623 S12: 0.4217 S13: 0.0993 REMARK 3 S21: 0.0098 S22: -0.0243 S23: 0.0539 REMARK 3 S31: -0.1405 S32: 0.4460 S33: 0.1866 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 159 A 215 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7002 -15.9730 -46.8624 REMARK 3 T TENSOR REMARK 3 T11: 0.0951 T22: 0.3356 REMARK 3 T33: 0.1878 T12: -0.0043 REMARK 3 T13: 0.0102 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 5.1295 L22: 5.9903 REMARK 3 L33: 10.9911 L12: -4.1348 REMARK 3 L13: 4.2691 L23: -5.2796 REMARK 3 S TENSOR REMARK 3 S11: -0.5354 S12: -0.4920 S13: -0.1134 REMARK 3 S21: 0.5818 S22: 0.5786 S23: 0.5260 REMARK 3 S31: -0.3494 S32: -1.1639 S33: -0.0432 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 216 A 392 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6942 -8.3981 -19.9460 REMARK 3 T TENSOR REMARK 3 T11: 0.0640 T22: 0.1596 REMARK 3 T33: 0.0829 T12: 0.0135 REMARK 3 T13: 0.0328 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 1.9844 L22: 3.9561 REMARK 3 L33: 1.8026 L12: 0.4605 REMARK 3 L13: -0.6298 L23: 0.0325 REMARK 3 S TENSOR REMARK 3 S11: -0.1040 S12: -0.1320 S13: 0.0862 REMARK 3 S21: 0.4084 S22: 0.0040 S23: 0.1392 REMARK 3 S31: 0.1401 S32: -0.0108 S33: 0.1000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3TX0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068025. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19421 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 125 MM MANGANESE CHLORIDE, 1.8 M REMARK 280 AMMONIUM CITRATE, PH 7.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.48750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.78100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.85300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.78100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.48750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.85300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 HIS A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 LYS A 393 REMARK 465 LYS A 394 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 32 NH2 ARG A 58 2.10 REMARK 500 O GLY A 336 O HOH A 399 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 159 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 87.08 -164.34 REMARK 500 MET A 46 58.77 -144.63 REMARK 500 THR A 74 -174.55 -177.82 REMARK 500 SER A 157 63.58 -68.92 REMARK 500 LEU A 185 68.34 -104.84 REMARK 500 ASN A 205 61.71 -158.61 REMARK 500 PHE A 220 70.03 -69.76 REMARK 500 PHE A 289 -52.24 -121.57 REMARK 500 HIS A 328 -174.95 -175.50 REMARK 500 ASN A 330 77.83 -154.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 396 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 13 OD1 REMARK 620 2 THR A 85 OG1 122.6 REMARK 620 3 ASP A 327 OD2 117.1 109.2 REMARK 620 4 HIS A 328 NE2 104.1 101.8 97.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 395 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 156 OD2 REMARK 620 2 ASP A 286 OD1 106.9 REMARK 620 3 HIS A 291 NE2 101.1 99.3 REMARK 620 4 HIS A 339 NE2 115.7 126.1 103.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 396 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TWZ RELATED DB: PDB REMARK 900 PHOSPHORYLATED BACILLUS CEREUS PHOSPHOPENTOMUTASE IN THE P212121 REMARK 900 CRYSTAL FORM DBREF 3TX0 A 2 394 UNP Q818Z9 DEOB_BACCR 2 394 SEQADV 3TX0 GLY A -4 UNP Q818Z9 EXPRESSION TAG SEQADV 3TX0 SER A -3 UNP Q818Z9 EXPRESSION TAG SEQADV 3TX0 HIS A -2 UNP Q818Z9 EXPRESSION TAG SEQADV 3TX0 MET A -1 UNP Q818Z9 EXPRESSION TAG SEQADV 3TX0 ALA A 0 UNP Q818Z9 EXPRESSION TAG SEQADV 3TX0 SER A 1 UNP Q818Z9 EXPRESSION TAG SEQRES 1 A 399 GLY SER HIS MET ALA SER ASN LYS TYR LYS ARG ILE PHE SEQRES 2 A 399 LEU VAL VAL MET ASP SER VAL GLY ILE GLY GLU ALA PRO SEQRES 3 A 399 ASP ALA GLU GLN PHE GLY ASP LEU GLY SER ASP THR ILE SEQRES 4 A 399 GLY HIS ILE ALA GLU HIS MET ASN GLY LEU GLN MET PRO SEQRES 5 A 399 ASN MET VAL LYS LEU GLY LEU GLY ASN ILE ARG GLU MET SEQRES 6 A 399 LYS GLY ILE SER LYS VAL GLU LYS PRO LEU GLY TYR TYR SEQRES 7 A 399 THR LYS MET GLN GLU LYS SER THR GLY LYS ASP THR MET SEQRES 8 A 399 THR GLY HIS TRP GLU ILE MET GLY LEU TYR ILE ASP THR SEQRES 9 A 399 PRO PHE GLN VAL PHE PRO GLU GLY PHE PRO LYS GLU LEU SEQRES 10 A 399 LEU ASP GLU LEU GLU GLU LYS THR GLY ARG LYS ILE ILE SEQRES 11 A 399 GLY ASN LYS PRO ALA SER GLY THR GLU ILE LEU ASP GLU SEQRES 12 A 399 LEU GLY GLN GLU GLN MET GLU THR GLY SER LEU ILE VAL SEQRES 13 A 399 TYR THR SER ALA ASP SER VAL LEU GLN ILE ALA ALA HIS SEQRES 14 A 399 GLU GLU VAL VAL PRO LEU ASP GLU LEU TYR LYS ILE CYS SEQRES 15 A 399 LYS ILE ALA ARG GLU LEU THR LEU ASP GLU LYS TYR MET SEQRES 16 A 399 VAL GLY ARG VAL ILE ALA ARG PRO PHE VAL GLY GLU PRO SEQRES 17 A 399 GLY ASN PHE THR ARG THR PRO ASN ARG HIS ASP TYR ALA SEQRES 18 A 399 LEU LYS PRO PHE GLY ARG THR VAL MET ASN GLU LEU LYS SEQRES 19 A 399 ASP SER ASP TYR ASP VAL ILE ALA ILE GLY LYS ILE SER SEQRES 20 A 399 ASP ILE TYR ASP GLY GLU GLY VAL THR GLU SER LEU ARG SEQRES 21 A 399 THR LYS SER ASN MET ASP GLY MET ASP LYS LEU VAL ASP SEQRES 22 A 399 THR LEU ASN MET ASP PHE THR GLY LEU SER PHE LEU ASN SEQRES 23 A 399 LEU VAL ASP PHE ASP ALA LEU PHE GLY HIS ARG ARG ASP SEQRES 24 A 399 PRO GLN GLY TYR GLY GLU ALA LEU GLN GLU TYR ASP ALA SEQRES 25 A 399 ARG LEU PRO GLU VAL PHE ALA LYS LEU LYS GLU ASP ASP SEQRES 26 A 399 LEU LEU LEU ILE THR ALA ASP HIS GLY ASN ASP PRO ILE SEQRES 27 A 399 HIS PRO GLY THR ASP HIS THR ARG GLU TYR VAL PRO LEU SEQRES 28 A 399 LEU ALA TYR SER PRO SER MET LYS GLU GLY GLY GLN GLU SEQRES 29 A 399 LEU PRO LEU ARG GLN THR PHE ALA ASP ILE GLY ALA THR SEQRES 30 A 399 VAL ALA GLU ASN PHE GLY VAL LYS MET PRO GLU TYR GLY SEQRES 31 A 399 THR SER PHE LEU ASN GLU LEU LYS LYS HET MN A 395 1 HET MN A 396 1 HETNAM MN MANGANESE (II) ION FORMUL 2 MN 2(MN 2+) FORMUL 4 HOH *27(H2 O) HELIX 1 1 ASP A 22 GLY A 27 5 6 HELIX 2 2 ASP A 32 MET A 41 1 10 HELIX 3 3 MET A 46 GLY A 53 1 8 HELIX 4 4 GLY A 53 ARG A 58 1 6 HELIX 5 5 ASP A 84 MET A 93 1 10 HELIX 6 6 PRO A 109 GLY A 121 1 13 HELIX 7 7 SER A 131 GLY A 147 1 17 HELIX 8 8 PRO A 169 THR A 184 1 16 HELIX 9 9 ASP A 186 MET A 190 5 5 HELIX 10 10 THR A 223 SER A 231 1 9 HELIX 11 11 LYS A 240 TYR A 245 1 6 HELIX 12 12 SER A 258 ASN A 271 1 14 HELIX 13 13 VAL A 283 PHE A 289 1 7 HELIX 14 14 ASP A 294 LEU A 316 1 23 HELIX 15 15 ALA A 367 GLY A 378 1 12 HELIX 16 16 PHE A 388 LEU A 392 5 5 SHEET 1 A 7 TYR A 72 MET A 76 0 SHEET 2 A 7 VAL A 344 TYR A 349 -1 O ALA A 348 N TYR A 72 SHEET 3 A 7 ASP A 320 THR A 325 -1 N LEU A 322 O TYR A 349 SHEET 4 A 7 ARG A 6 MET A 12 1 N MET A 12 O THR A 325 SHEET 5 A 7 GLY A 276 LEU A 282 1 O SER A 278 N ILE A 7 SHEET 6 A 7 ASP A 234 ILE A 238 1 N ILE A 238 O PHE A 279 SHEET 7 A 7 GLU A 252 LEU A 254 1 O LEU A 254 N ALA A 237 SHEET 1 B 5 ILE A 124 PRO A 129 0 SHEET 2 B 5 LEU A 149 THR A 153 1 O VAL A 151 N ASN A 127 SHEET 3 B 5 VAL A 158 HIS A 164 -1 O ALA A 162 N ILE A 150 SHEET 4 B 5 ARG A 193 GLU A 202 1 O ARG A 197 N ILE A 161 SHEET 5 B 5 ASN A 205 ARG A 208 -1 O THR A 207 N VAL A 200 SHEET 1 C 5 ILE A 124 PRO A 129 0 SHEET 2 C 5 LEU A 149 THR A 153 1 O VAL A 151 N ASN A 127 SHEET 3 C 5 VAL A 158 HIS A 164 -1 O ALA A 162 N ILE A 150 SHEET 4 C 5 ARG A 193 GLU A 202 1 O ARG A 197 N ILE A 161 SHEET 5 C 5 HIS A 213 ALA A 216 -1 O TYR A 215 N VAL A 194 LINK OD1 ASP A 13 MN MN A 396 1555 1555 2.15 LINK OG1 THR A 85 MN MN A 396 1555 1555 2.08 LINK OD2 ASP A 156 MN MN A 395 1555 1555 2.09 LINK OD1 ASP A 286 MN MN A 395 1555 1555 1.91 LINK NE2 HIS A 291 MN MN A 395 1555 1555 2.15 LINK OD2 ASP A 327 MN MN A 396 1555 1555 2.40 LINK NE2 HIS A 328 MN MN A 396 1555 1555 2.15 LINK NE2 HIS A 339 MN MN A 395 1555 1555 1.87 SITE 1 AC1 4 ASP A 156 ASP A 286 HIS A 291 HIS A 339 SITE 1 AC2 4 ASP A 13 THR A 85 ASP A 327 HIS A 328 CRYST1 60.975 75.706 95.562 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016400 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010464 0.00000