HEADER CELL ADHESION 23-SEP-11 3TXA TITLE STRUCTURAL ANALYSIS OF ADHESIVE TIP PILIN, GBS104 FROM GROUP B TITLE 2 STREPTOCOCCUS AGALACTIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL WALL SURFACE ANCHOR FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N2 AND N3 DOMAINS (UNP RESIDUES 48-729); COMPND 5 SYNONYM: GBS104, ADHESIVE TIP PILIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE SEROGROUP V; SOURCE 3 ORGANISM_TAXID: 216466; SOURCE 4 STRAIN: 2603 V/R; SOURCE 5 GENE: SAG0649; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS VWFA FOLD, IGG-LIKE FOLD, ANCILLARY PILIN, GRAM-POSITIVE BACTERIAL KEYWDS 2 CELL SURFACE, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR V.KRISHNAN,S.V.L.NARAYANA REVDAT 6 30-OCT-24 3TXA 1 REMARK REVDAT 5 13-SEP-23 3TXA 1 REMARK REVDAT 4 25-AUG-21 3TXA 1 REMARK LINK REVDAT 3 19-JUN-13 3TXA 1 JRNL REVDAT 2 29-MAY-13 3TXA 1 JRNL REVDAT 1 27-MAR-13 3TXA 0 JRNL AUTH V.KRISHNAN,P.DWIVEDI,B.J.KIM,A.SAMAL,K.MACON,X.MA,A.MISHRA, JRNL AUTH 2 K.S.DORAN,H.TON-THAT,S.V.NARAYANA JRNL TITL STRUCTURE OF STREPTOCOCCUS AGALACTIAE TIP PILIN GBS104: A JRNL TITL 2 MODEL FOR GBS PILI ASSEMBLY AND HOST INTERACTIONS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 1073 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23695252 JRNL DOI 10.1107/S0907444913004642 REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1633 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2199 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4610 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.32000 REMARK 3 B22 (A**2) : 2.32000 REMARK 3 B33 (A**2) : -3.48000 REMARK 3 B12 (A**2) : 1.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.346 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.267 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.208 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.023 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4702 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6365 ; 1.586 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 582 ; 6.946 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 229 ;40.419 ;25.764 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 827 ;18.569 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;20.766 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 707 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3573 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2897 ; 0.890 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4703 ; 1.684 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1805 ; 2.314 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1662 ; 4.029 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3TXA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068035. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32251 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.619 REMARK 200 RESOLUTION RANGE LOW (A) : 39.788 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09600 REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.67000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3TVY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG4000, 0.1 M TRIS, PH 8.0, 0.2 M REMARK 280 LITHIUM SULFATE, 10 MM CADMIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.27967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.55933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 78.55933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.27967 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 48 REMARK 465 ASN A 49 REMARK 465 ALA A 50 REMARK 465 THR A 51 REMARK 465 PRO A 52 REMARK 465 LEU A 53 REMARK 465 GLY A 54 REMARK 465 LYS A 55 REMARK 465 ALA A 56 REMARK 465 THR A 57 REMARK 465 PHE A 58 REMARK 465 VAL A 59 REMARK 465 LEU A 60 REMARK 465 LYS A 61 REMARK 465 ASN A 62 REMARK 465 ASP A 63 REMARK 465 ASN A 64 REMARK 465 ASP A 65 REMARK 465 LYS A 66 REMARK 465 SER A 67 REMARK 465 GLU A 68 REMARK 465 THR A 69 REMARK 465 SER A 70 REMARK 465 HIS A 71 REMARK 465 GLU A 72 REMARK 465 THR A 73 REMARK 465 VAL A 74 REMARK 465 GLU A 75 REMARK 465 GLY A 76 REMARK 465 SER A 77 REMARK 465 GLY A 78 REMARK 465 GLU A 79 REMARK 465 ALA A 80 REMARK 465 THR A 81 REMARK 465 PHE A 82 REMARK 465 GLU A 83 REMARK 465 ASN A 84 REMARK 465 ILE A 85 REMARK 465 LYS A 86 REMARK 465 PRO A 87 REMARK 465 GLY A 88 REMARK 465 ASP A 89 REMARK 465 TYR A 90 REMARK 465 THR A 91 REMARK 465 LEU A 92 REMARK 465 ARG A 93 REMARK 465 GLU A 94 REMARK 465 GLU A 95 REMARK 465 THR A 96 REMARK 465 ALA A 97 REMARK 465 PRO A 98 REMARK 465 ILE A 99 REMARK 465 GLY A 100 REMARK 465 TYR A 101 REMARK 465 LYS A 102 REMARK 465 LYS A 103 REMARK 465 THR A 104 REMARK 465 ASP A 105 REMARK 465 LYS A 106 REMARK 465 THR A 107 REMARK 465 TRP A 108 REMARK 465 LYS A 109 REMARK 465 VAL A 110 REMARK 465 LYS A 111 REMARK 465 VAL A 112 REMARK 465 ALA A 113 REMARK 465 ASP A 114 REMARK 465 ASN A 115 REMARK 465 GLY A 116 REMARK 465 ALA A 117 REMARK 465 THR A 118 REMARK 465 ILE A 119 REMARK 465 ILE A 120 REMARK 465 GLU A 121 REMARK 465 GLY A 122 REMARK 465 MET A 123 REMARK 465 ASP A 124 REMARK 465 ALA A 125 REMARK 465 ASP A 126 REMARK 465 LYS A 127 REMARK 465 ALA A 128 REMARK 465 GLU A 129 REMARK 465 LYS A 130 REMARK 465 ARG A 131 REMARK 465 LYS A 132 REMARK 465 GLU A 133 REMARK 465 VAL A 134 REMARK 465 LEU A 135 REMARK 465 ASN A 136 REMARK 465 ARG A 720 REMARK 465 GLU A 721 REMARK 465 PHE A 722 REMARK 465 PRO A 723 REMARK 465 VAL A 724 REMARK 465 LEU A 725 REMARK 465 THR A 726 REMARK 465 ILE A 727 REMARK 465 SER A 728 REMARK 465 ASN A 729 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 384 O HOH A 904 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 384 CB - CG - OD1 ANGL. DEV. = 9.4 DEGREES REMARK 500 ASP A 384 CB - CG - OD2 ANGL. DEV. = -9.7 DEGREES REMARK 500 ARG A 462 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 616 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 149 -5.13 73.59 REMARK 500 SER A 160 42.92 -96.93 REMARK 500 ILE A 172 -107.02 60.64 REMARK 500 LYS A 175 -127.46 -102.15 REMARK 500 ASP A 195 101.72 -160.14 REMARK 500 ASN A 199 44.84 72.68 REMARK 500 GLU A 217 86.23 -68.36 REMARK 500 LYS A 263 -17.04 -45.25 REMARK 500 ALA A 273 -110.17 -157.59 REMARK 500 PHE A 355 69.85 -101.86 REMARK 500 ASP A 438 12.87 -154.10 REMARK 500 THR A 453 122.90 -35.25 REMARK 500 SER A 480 72.15 43.75 REMARK 500 THR A 506 -109.28 -121.29 REMARK 500 ILE A 524 -52.73 -123.55 REMARK 500 ASN A 539 -0.31 -145.48 REMARK 500 THR A 582 -39.47 -29.77 REMARK 500 ASP A 592 57.46 31.60 REMARK 500 ILE A 643 -31.14 -21.93 REMARK 500 HIS A 662 36.79 77.82 REMARK 500 ASN A 682 24.79 -77.58 REMARK 500 ASN A 686 17.03 41.60 REMARK 500 ASN A 693 -167.98 -70.06 REMARK 500 GLU A 702 -60.30 -90.38 REMARK 500 GLU A 704 67.18 -162.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 231 OG REMARK 620 2 SER A 233 OG 108.5 REMARK 620 3 ASP A 384 OD1 88.7 71.4 REMARK 620 4 HOH A 903 O 89.1 132.2 64.9 REMARK 620 5 HOH A 904 O 152.1 70.8 64.2 73.6 REMARK 620 6 HOH A 911 O 111.2 96.4 159.4 118.5 96.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 807 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 237 OE1 REMARK 620 2 HOH A 963 O 103.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 804 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 303 OD1 REMARK 620 2 ASP A 303 OD2 52.1 REMARK 620 3 HIS A 305 ND1 136.9 87.4 REMARK 620 4 HOH A 905 O 115.3 132.3 79.1 REMARK 620 5 HOH A 906 O 76.9 56.6 93.7 167.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 805 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 314 NE2 REMARK 620 2 GLU A 340 OE2 95.8 REMARK 620 3 GLU A 340 OE1 139.8 59.1 REMARK 620 4 HOH A 907 O 76.5 88.2 127.9 REMARK 620 5 HOH A 908 O 100.1 105.6 63.0 166.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 802 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 588 NE2 REMARK 620 2 HOH A 901 O 73.5 REMARK 620 3 HOH A 902 O 104.6 178.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 808 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 592 OD1 REMARK 620 2 ASP A 592 OD2 53.6 REMARK 620 3 HIS A 662 ND1 124.6 83.8 REMARK 620 4 HOH A 909 O 110.9 64.3 69.4 REMARK 620 5 HOH A 910 O 67.1 103.0 95.1 160.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LI A 809 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TVY RELATED DB: PDB REMARK 900 GBS104 N3 (VWFA) DOMAIN REMARK 900 RELATED ID: 3TW0 RELATED DB: PDB REMARK 900 GBS104 N3 (VWFA) DOMAIN - CYS MUTANT DBREF 3TXA A 48 729 UNP Q8E0S5 Q8E0S5_STRA5 48 729 SEQRES 1 A 682 ASP ASN ALA THR PRO LEU GLY LYS ALA THR PHE VAL LEU SEQRES 2 A 682 LYS ASN ASP ASN ASP LYS SER GLU THR SER HIS GLU THR SEQRES 3 A 682 VAL GLU GLY SER GLY GLU ALA THR PHE GLU ASN ILE LYS SEQRES 4 A 682 PRO GLY ASP TYR THR LEU ARG GLU GLU THR ALA PRO ILE SEQRES 5 A 682 GLY TYR LYS LYS THR ASP LYS THR TRP LYS VAL LYS VAL SEQRES 6 A 682 ALA ASP ASN GLY ALA THR ILE ILE GLU GLY MET ASP ALA SEQRES 7 A 682 ASP LYS ALA GLU LYS ARG LYS GLU VAL LEU ASN ALA GLN SEQRES 8 A 682 TYR PRO LYS SER ALA ILE TYR GLU ASP THR LYS GLU ASN SEQRES 9 A 682 TYR PRO LEU VAL ASN VAL GLU GLY SER LYS VAL GLY GLU SEQRES 10 A 682 GLN TYR LYS ALA LEU ASN PRO ILE ASN GLY LYS ASP GLY SEQRES 11 A 682 ARG ARG GLU ILE ALA GLU GLY TRP LEU SER LYS LYS ILE SEQRES 12 A 682 THR GLY VAL ASN ASP LEU ASP LYS ASN LYS TYR LYS ILE SEQRES 13 A 682 GLU LEU THR VAL GLU GLY LYS THR THR VAL GLU THR LYS SEQRES 14 A 682 GLU LEU ASN GLN PRO LEU ASP VAL VAL VAL LEU LEU ASP SEQRES 15 A 682 ASN SER ASN SER MET ASN ASN GLU ARG ALA ASN ASN SER SEQRES 16 A 682 GLN ARG ALA LEU LYS ALA GLY GLU ALA VAL GLU LYS LEU SEQRES 17 A 682 ILE ASP LYS ILE THR SER ASN LYS ASP ASN ARG VAL ALA SEQRES 18 A 682 LEU VAL THR TYR ALA SER THR ILE PHE ASP GLY THR GLU SEQRES 19 A 682 ALA THR VAL SER LYS GLY VAL ALA ASP GLN ASN GLY LYS SEQRES 20 A 682 ALA LEU ASN ASP SER VAL SER TRP ASP TYR HIS LYS THR SEQRES 21 A 682 THR PHE THR ALA THR THR HIS ASN TYR SER TYR LEU ASN SEQRES 22 A 682 LEU THR ASN ASP ALA ASN GLU VAL ASN ILE LEU LYS SER SEQRES 23 A 682 ARG ILE PRO LYS GLU ALA GLU HIS ILE ASN GLY ASP ARG SEQRES 24 A 682 THR LEU TYR GLN PHE GLY ALA THR PHE THR GLN LYS ALA SEQRES 25 A 682 LEU MET LYS ALA ASN GLU ILE LEU GLU THR GLN SER SER SEQRES 26 A 682 ASN ALA ARG LYS LYS LEU ILE PHE HIS VAL THR ASP GLY SEQRES 27 A 682 VAL PRO THR MET SER TYR ALA ILE ASN PHE ASN PRO TYR SEQRES 28 A 682 ILE SER THR SER TYR GLN ASN GLN PHE ASN SER PHE LEU SEQRES 29 A 682 ASN LYS ILE PRO ASP ARG SER GLY ILE LEU GLN GLU ASP SEQRES 30 A 682 PHE ILE ILE ASN GLY ASP ASP TYR GLN ILE VAL LYS GLY SEQRES 31 A 682 ASP GLY GLU SER PHE LYS LEU PHE SER ASP ARG LYS VAL SEQRES 32 A 682 PRO VAL THR GLY GLY THR THR GLN ALA ALA TYR ARG VAL SEQRES 33 A 682 PRO GLN ASN GLN LEU SER VAL MET SER ASN GLU GLY TYR SEQRES 34 A 682 ALA ILE ASN SER GLY TYR ILE TYR LEU TYR TRP ARG ASP SEQRES 35 A 682 TYR ASN TRP VAL TYR PRO PHE ASP PRO LYS THR LYS LYS SEQRES 36 A 682 VAL SER ALA THR LYS GLN ILE LYS THR HIS GLY GLU PRO SEQRES 37 A 682 THR THR LEU TYR PHE ASN GLY ASN ILE ARG PRO LYS GLY SEQRES 38 A 682 TYR ASP ILE PHE THR VAL GLY ILE GLY VAL ASN GLY ASP SEQRES 39 A 682 PRO GLY ALA THR PRO LEU GLU ALA GLU LYS PHE MET GLN SEQRES 40 A 682 SER ILE SER SER LYS THR GLU ASN TYR THR ASN VAL ASP SEQRES 41 A 682 ASP THR ASN LYS ILE TYR ASP GLU LEU ASN LYS TYR PHE SEQRES 42 A 682 LYS THR ILE VAL GLU GLU LYS HIS SER ILE VAL ASP GLY SEQRES 43 A 682 ASN VAL THR ASP PRO MET GLY GLU MET ILE GLU PHE GLN SEQRES 44 A 682 LEU LYS ASN GLY GLN SER PHE THR HIS ASP ASP TYR VAL SEQRES 45 A 682 LEU VAL GLY ASN ASP GLY SER GLN LEU LYS ASN GLY VAL SEQRES 46 A 682 ALA LEU GLY GLY PRO ASN SER ASP GLY GLY ILE LEU LYS SEQRES 47 A 682 ASP VAL THR VAL THR TYR ASP LYS THR SER GLN THR ILE SEQRES 48 A 682 LYS ILE ASN HIS LEU ASN LEU GLY SER GLY GLN LYS VAL SEQRES 49 A 682 VAL LEU THR TYR ASP VAL ARG LEU LYS ASP ASN TYR ILE SEQRES 50 A 682 SER ASN LYS PHE TYR ASN THR ASN ASN ARG THR THR LEU SEQRES 51 A 682 SER PRO LYS SER GLU LYS GLU PRO ASN THR ILE ARG ASP SEQRES 52 A 682 PHE PRO ILE PRO LYS ILE ARG ASP VAL ARG GLU PHE PRO SEQRES 53 A 682 VAL LEU THR ILE SER ASN HET MG A 801 1 HET CD A 802 1 HET CD A 803 1 HET CD A 804 1 HET CD A 805 1 HET CD A 806 1 HET CD A 807 1 HET CD A 808 1 HET LI A 809 1 HETNAM MG MAGNESIUM ION HETNAM CD CADMIUM ION HETNAM LI LITHIUM ION FORMUL 2 MG MG 2+ FORMUL 3 CD 7(CD 2+) FORMUL 10 LI LI 1+ FORMUL 11 HOH *79(H2 O) HELIX 1 1 SER A 231 ASN A 235 5 5 HELIX 2 2 GLU A 237 SER A 242 1 6 HELIX 3 3 GLN A 243 THR A 260 1 18 HELIX 4 4 ASP A 324 ARG A 334 1 11 HELIX 5 5 THR A 347 GLY A 352 5 6 HELIX 6 6 PHE A 355 SER A 371 1 17 HELIX 7 7 SER A 402 LYS A 413 1 12 HELIX 8 8 LEU A 421 PHE A 425 5 5 HELIX 9 9 ASP A 430 VAL A 435 1 6 HELIX 10 10 PRO A 464 ASN A 466 5 3 HELIX 11 11 GLN A 467 GLY A 475 1 9 HELIX 12 12 ARG A 488 TRP A 492 5 5 HELIX 13 13 HIS A 512 ILE A 524 1 13 HELIX 14 14 ARG A 525 GLY A 528 5 4 HELIX 15 15 THR A 545 ILE A 556 1 12 HELIX 16 16 LYS A 559 GLU A 561 5 3 HELIX 17 17 LYS A 571 ILE A 583 1 13 HELIX 18 18 THR A 614 ASP A 616 5 3 HELIX 19 19 GLY A 641 LYS A 645 5 5 SHEET 1 A 5 SER A 142 ILE A 144 0 SHEET 2 A 5 ASN A 151 ASN A 156 -1 O TYR A 152 N ALA A 143 SHEET 3 A 5 ALA A 168 PRO A 171 -1 O ASN A 170 N VAL A 155 SHEET 4 A 5 LYS A 715 ILE A 716 -1 O LYS A 715 N LEU A 169 SHEET 5 A 5 TYR A 689 ASN A 690 -1 N TYR A 689 O ILE A 716 SHEET 1 B 5 ARG A 179 ILE A 181 0 SHEET 2 B 5 GLY A 184 ASP A 195 -1 O GLY A 184 N ILE A 181 SHEET 3 B 5 LYS A 200 GLY A 209 -1 O GLU A 204 N LYS A 189 SHEET 4 B 5 LYS A 670 LEU A 679 -1 O LEU A 673 N LEU A 205 SHEET 5 B 5 ILE A 603 PHE A 605 -1 N GLU A 604 O ARG A 678 SHEET 1 C 7 ARG A 179 ILE A 181 0 SHEET 2 C 7 GLY A 184 ASP A 195 -1 O GLY A 184 N ILE A 181 SHEET 3 C 7 LYS A 200 GLY A 209 -1 O GLU A 204 N LYS A 189 SHEET 4 C 7 LYS A 670 LEU A 679 -1 O LEU A 673 N LEU A 205 SHEET 5 C 7 TYR A 618 GLY A 622 -1 N VAL A 621 O VAL A 672 SHEET 6 C 7 SER A 626 LYS A 629 -1 O SER A 626 N GLY A 622 SHEET 7 C 7 VAL A 632 GLY A 635 -1 O VAL A 632 N LYS A 629 SHEET 1 D 2 THR A 211 THR A 215 0 SHEET 2 D 2 VAL A 584 HIS A 588 -1 O LYS A 587 N THR A 212 SHEET 1 E 6 TYR A 318 THR A 322 0 SHEET 2 E 6 ARG A 266 TYR A 272 -1 N LEU A 269 O TYR A 318 SHEET 3 E 6 LEU A 222 ASP A 229 1 N VAL A 226 O VAL A 270 SHEET 4 E 6 LYS A 376 THR A 383 1 O PHE A 380 N LEU A 227 SHEET 5 E 6 ASP A 530 ILE A 536 1 O ASP A 530 N ILE A 379 SHEET 6 E 6 TYR A 563 VAL A 566 1 O VAL A 566 N GLY A 535 SHEET 1 F 2 GLU A 281 SER A 285 0 SHEET 2 F 2 THR A 308 THR A 312 -1 O ALA A 311 N ALA A 282 SHEET 1 G 2 VAL A 288 ALA A 289 0 SHEET 2 G 2 ALA A 295 LEU A 296 -1 O LEU A 296 N VAL A 288 SHEET 1 H 2 MET A 389 SER A 390 0 SHEET 2 H 2 LYS A 436 GLY A 437 -1 O LYS A 436 N SER A 390 SHEET 1 I 3 ALA A 460 ARG A 462 0 SHEET 2 I 3 TYR A 482 TYR A 484 -1 O ILE A 483 N TYR A 461 SHEET 3 I 3 ILE A 478 ASN A 479 -1 N ASN A 479 O TYR A 482 SHEET 1 J 5 THR A 648 ASP A 652 0 SHEET 2 J 5 THR A 657 LEU A 665 -1 O LYS A 659 N THR A 650 SHEET 3 J 5 ILE A 590 PRO A 598 -1 N VAL A 595 O ILE A 660 SHEET 4 J 5 THR A 696 SER A 698 -1 O SER A 698 N ASN A 594 SHEET 5 J 5 ARG A 709 ASP A 710 -1 O ARG A 709 N LEU A 697 LINK NZ LYS A 188 CG ASN A 692 1555 1555 1.35 LINK OG SER A 231 MG MG A 801 1555 1555 2.13 LINK OG SER A 233 MG MG A 801 1555 1555 2.06 LINK OE1 GLU A 237 CD CD A 807 1555 1555 2.56 LINK OD1 ASP A 303 CD CD A 804 1555 1555 2.42 LINK OD2 ASP A 303 CD CD A 804 1555 1555 2.59 LINK ND1 HIS A 305 CD CD A 804 1555 1555 2.38 LINK NE2 HIS A 314 CD CD A 805 1555 1555 2.24 LINK OE2 GLU A 340 CD CD A 805 1555 1555 2.00 LINK OE1 GLU A 340 CD CD A 805 1555 1555 2.24 LINK OD1 ASP A 384 MG MG A 801 1555 1555 2.00 LINK NE2 HIS A 588 CD CD A 802 1555 1555 2.32 LINK OD1 ASP A 592 CD CD A 808 1555 1555 2.35 LINK OD2 ASP A 592 CD CD A 808 1555 1555 2.58 LINK ND1 HIS A 662 CD CD A 808 1555 1555 2.33 LINK MG MG A 801 O HOH A 903 1555 1555 2.12 LINK MG MG A 801 O HOH A 904 1555 1555 2.05 LINK MG MG A 801 O HOH A 911 1555 1555 1.95 LINK CD CD A 802 O HOH A 901 1555 1555 2.46 LINK CD CD A 802 O HOH A 902 1555 1555 2.21 LINK CD CD A 804 O HOH A 905 1555 1555 2.42 LINK CD CD A 804 O HOH A 906 1555 1555 2.52 LINK CD CD A 805 O HOH A 907 1555 1555 2.05 LINK CD CD A 805 O HOH A 908 1555 1555 2.16 LINK CD CD A 807 O HOH A 963 1555 1555 2.57 LINK CD CD A 808 O HOH A 909 1555 1555 2.09 LINK CD CD A 808 O HOH A 910 1555 1555 2.39 CISPEP 1 TYR A 494 PRO A 495 0 2.36 CISPEP 2 ASP A 541 PRO A 542 0 -11.18 SITE 1 AC1 6 SER A 231 SER A 233 ASP A 384 HOH A 903 SITE 2 AC1 6 HOH A 904 HOH A 911 SITE 1 AC2 3 HIS A 588 HOH A 901 HOH A 902 SITE 1 AC3 2 TRP A 302 ARG A 346 SITE 1 AC4 4 ASP A 303 HIS A 305 HOH A 905 HOH A 906 SITE 1 AC5 5 HIS A 314 GLU A 340 GLU A 423 HOH A 907 SITE 2 AC5 5 HOH A 908 SITE 1 AC6 1 HIS A 662 SITE 1 AC7 5 GLU A 237 HIS A 341 ASN A 343 LYS A 608 SITE 2 AC7 5 HOH A 963 SITE 1 AC8 4 ASP A 592 HIS A 662 HOH A 909 HOH A 910 SITE 1 AC9 5 LEU A 607 LYS A 608 ASN A 609 SER A 612 SITE 2 AC9 5 ASP A 617 CRYST1 124.585 124.585 117.839 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008027 0.004634 0.000000 0.00000 SCALE2 0.000000 0.009268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008486 0.00000