HEADER TRANSFERASE 23-SEP-11 3TXV TITLE CRYSTAL STRUCTURE OF A PROBABLE TAGATOSE 6 PHOSPHATE KINASE FROM TITLE 2 SINORHIZOBIUM MELILOTI 1021 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE TAGATOSE 6-PHOSPHATE KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.144; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MELILOTI; SOURCE 3 ORGANISM_TAXID: 382; SOURCE 4 STRAIN: 1021; SOURCE 5 GENE: RB0951, SM_B21373; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.AGARWAL,S.CHAMALA,B.EVANS,R.FOTI,A.GIZZI,B.HILLERICH,A.KAR, AUTHOR 2 J.LAFLEUR,R.SEIDEL,G.VILLIGAS,W.ZENCHECK,S.C.ALMO,S.SWAMINATHAN,NEW AUTHOR 3 YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 4 06-NOV-24 3TXV 1 REMARK REVDAT 3 06-DEC-23 3TXV 1 REMARK REVDAT 2 13-SEP-23 3TXV 1 SEQADV LINK REVDAT 1 12-OCT-11 3TXV 0 JRNL AUTH R.AGARWAL,S.C.ALMO,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF A PROBABLE TAGATOSE 6 PHOSPHATE KINASE JRNL TITL 2 FROM SINORHIZOBIUM MELILOTI 1021 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 13522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 716 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 955 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.4630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2847 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.823 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.386 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.305 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.176 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.890 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2911 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3970 ; 1.636 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 384 ; 6.805 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;37.037 ;23.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 405 ;21.606 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;21.409 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 450 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2258 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1926 ; 0.637 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3041 ; 1.244 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 985 ; 2.033 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 929 ; 3.453 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TXV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SI-III REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14349 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 35.00 REMARK 200 R MERGE (I) : 0.17000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 34.30 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, PHASER, CCP4 REMARK 200 STARTING MODEL: 2FIQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CACL2, 0.1M HEPES PH 7.5, 28% REMARK 280 PEG400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.67800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.67800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.67800 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 48.67800 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 48.67800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 48.67800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 VAL A 2 REMARK 465 MSE A 3 REMARK 465 GLN A 4 REMARK 465 GLU A 5 REMARK 465 ASN A 6 REMARK 465 HIS A 7 REMARK 465 LEU A 8 REMARK 465 ILE A 9 REMARK 465 ASP A 10 REMARK 465 ILE A 11 REMARK 465 ALA A 12 REMARK 465 ARG A 13 REMARK 465 TRP A 14 REMARK 465 SER A 15 REMARK 465 GLU A 16 REMARK 465 ARG A 17 REMARK 465 PRO A 18 REMARK 465 GLY A 19 REMARK 465 PRO A 20 REMARK 465 GLY A 164 REMARK 465 GLY A 165 REMARK 465 ARG A 166 REMARK 465 GLY A 167 REMARK 465 GLY A 168 REMARK 465 VAL A 169 REMARK 465 VAL A 179 REMARK 465 PRO A 180 REMARK 465 ILE A 181 REMARK 465 PRO A 182 REMARK 465 GLY A 183 REMARK 465 GLY A 184 REMARK 465 ALA A 185 REMARK 465 LEU A 186 REMARK 465 GLU A 187 REMARK 465 GLU A 188 REMARK 465 LEU A 189 REMARK 465 ASP A 190 REMARK 465 THR A 191 REMARK 465 ARG A 427 REMARK 465 VAL A 428 REMARK 465 ALA A 429 REMARK 465 GLU A 430 REMARK 465 ASN A 431 REMARK 465 LEU A 432 REMARK 465 TYR A 433 REMARK 465 PHE A 434 REMARK 465 GLN A 435 REMARK 465 SER A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 465 HIS A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 465 TRP A 443 REMARK 465 SER A 444 REMARK 465 HIS A 445 REMARK 465 PRO A 446 REMARK 465 GLN A 447 REMARK 465 PHE A 448 REMARK 465 GLU A 449 REMARK 465 LYS A 450 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 21 CD NE CZ NH1 NH2 REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 THR A 72 CG2 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 81 CD NE CZ NH1 NH2 REMARK 470 LYS A 88 CD CE NZ REMARK 470 THR A 118 CG2 REMARK 470 LYS A 122 CD CE NZ REMARK 470 THR A 126 CG2 REMARK 470 THR A 148 CG2 REMARK 470 VAL A 163 CG1 CG2 REMARK 470 GLU A 193 CG CD OE1 OE2 REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 470 GLN A 229 CG CD OE1 NE2 REMARK 470 ARG A 246 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 THR A 253 CG2 REMARK 470 ARG A 276 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 316 CB CG CD OE1 OE2 REMARK 470 ARG A 317 CG CD NE CZ NH1 NH2 REMARK 470 THR A 323 CG2 REMARK 470 GLU A 343 CG CD OE1 OE2 REMARK 470 ASN A 400 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 27 75.11 -106.69 REMARK 500 ARG A 81 -28.27 -36.75 REMARK 500 LYS A 122 1.92 -68.41 REMARK 500 PRO A 272 -34.68 -34.21 REMARK 500 ILE A 357 -18.90 -49.51 REMARK 500 LEU A 391 52.66 -146.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-012416 RELATED DB: TARGETDB DBREF 3TXV A 3 428 UNP Q92UY3 Q92UY3_RHIME 1 426 SEQADV 3TXV MSE A 1 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV VAL A 2 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV ALA A 429 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV GLU A 430 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV ASN A 431 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV LEU A 432 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV TYR A 433 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV PHE A 434 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV GLN A 435 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV SER A 436 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV HIS A 437 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV HIS A 438 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV HIS A 439 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV HIS A 440 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV HIS A 441 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV HIS A 442 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV TRP A 443 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV SER A 444 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV HIS A 445 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV PRO A 446 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV GLN A 447 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV PHE A 448 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV GLU A 449 UNP Q92UY3 EXPRESSION TAG SEQADV 3TXV LYS A 450 UNP Q92UY3 EXPRESSION TAG SEQRES 1 A 450 MSE VAL MSE GLN GLU ASN HIS LEU ILE ASP ILE ALA ARG SEQRES 2 A 450 TRP SER GLU ARG PRO GLY PRO ARG GLY ILE PRO SER ILE SEQRES 3 A 450 CYS SER ALA HIS PRO LEU VAL ILE GLU ALA ALA MSE LEU SEQRES 4 A 450 ARG ALA HIS ARG GLU LYS ALA PRO VAL LEU ILE GLU ALA SEQRES 5 A 450 THR CYS ASN GLN VAL ASN GLN ASP GLY GLY TYR THR GLY SEQRES 6 A 450 MSE THR PRO GLU ASP PHE THR ARG PHE VAL GLY ALA ILE SEQRES 7 A 450 ALA ASP ARG ILE GLU PHE PRO ARG GLU LYS ILE LEU LEU SEQRES 8 A 450 GLY GLY ASP HIS LEU GLY PRO ASN PRO TRP LYS HIS LEU SEQRES 9 A 450 PRO ALA ASP GLU ALA MSE ALA LYS ALA GLU ALA MSE ILE SEQRES 10 A 450 THR ALA TYR ALA LYS ALA GLY PHE THR LYS LEU HIS LEU SEQRES 11 A 450 ASP THR SER MSE GLY CYS ALA GLY GLU PRO THR ALA LEU SEQRES 12 A 450 PRO ASP ALA THR THR ALA ALA ARG ALA ALA ARG LEU ALA SEQRES 13 A 450 ALA VAL ALA GLU ASP ALA VAL GLY GLY ARG GLY GLY VAL SEQRES 14 A 450 LEU PRO VAL TYR ILE ILE GLY THR GLU VAL PRO ILE PRO SEQRES 15 A 450 GLY GLY ALA LEU GLU GLU LEU ASP THR LEU GLU VAL THR SEQRES 16 A 450 ALA PRO GLU ALA ALA ILE GLU THR VAL ARG VAL HIS ARG SEQRES 17 A 450 ALA ALA PHE GLU GLU ALA GLY ALA ALA GLY ALA PHE SER SEQRES 18 A 450 ARG VAL VAL GLY ALA VAL VAL GLN PRO GLY VAL GLU PHE SEQRES 19 A 450 GLY ASN GLU ASN VAL ILE ALA TYR ASP ARG ALA ARG ALA SEQRES 20 A 450 GLU LYS LEU SER ALA THR LEU GLY GLN LEU HIS GLY MSE SEQRES 21 A 450 VAL PHE GLU ALA HIS SER THR ASP TYR GLN THR PRO ASP SEQRES 22 A 450 ALA LEU ARG GLU LEU VAL ALA ASP GLY PHE ALA ILE LEU SEQRES 23 A 450 LYS VAL GLY PRO GLY LEU THR PHE ALA LEU ARG GLU ALA SEQRES 24 A 450 LEU TYR GLY LEU ASP GLN ILE ALA ALA PHE LEU PHE PRO SEQRES 25 A 450 ALA ALA ARG GLU ARG THR LEU ALA GLU VAL THR GLU ALA SEQRES 26 A 450 VAL MSE ARG GLU GLU PRO ALA ASN TRP ALA LYS TYR TYR SEQRES 27 A 450 HIS GLY SER ALA GLU GLU GLN ARG LEU GLN ARG HIS PHE SEQRES 28 A 450 SER TYR SER ASP ARG ILE ARG TYR TYR TRP PRO HIS PRO SEQRES 29 A 450 LYS ALA ALA ALA ALA VAL ASP GLU LEU MSE SER LEU LEU SEQRES 30 A 450 ASP GLY VAL ALA ILE PRO GLU THR LEU ILE SER GLN PHE SEQRES 31 A 450 LEU ALA GLY SER TYR ALA ARG VAL ARG ASN GLY GLU VAL SEQRES 32 A 450 ALA PRO GLN ALA LYS PRO LEU ALA LEU ALA ALA VAL ASP SEQRES 33 A 450 ALA VAL LEU GLN ASP TYR PHE ALA ALA CYS ARG VAL ALA SEQRES 34 A 450 GLU ASN LEU TYR PHE GLN SER HIS HIS HIS HIS HIS HIS SEQRES 35 A 450 TRP SER HIS PRO GLN PHE GLU LYS MODRES 3TXV MSE A 38 MET SELENOMETHIONINE MODRES 3TXV MSE A 66 MET SELENOMETHIONINE MODRES 3TXV MSE A 110 MET SELENOMETHIONINE MODRES 3TXV MSE A 116 MET SELENOMETHIONINE MODRES 3TXV MSE A 134 MET SELENOMETHIONINE MODRES 3TXV MSE A 260 MET SELENOMETHIONINE MODRES 3TXV MSE A 327 MET SELENOMETHIONINE MODRES 3TXV MSE A 374 MET SELENOMETHIONINE HET MSE A 38 8 HET MSE A 66 8 HET MSE A 110 8 HET MSE A 116 8 HET MSE A 134 8 HET MSE A 260 8 HET MSE A 327 8 HET MSE A 374 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 HOH *31(H2 O) HELIX 1 1 HIS A 30 GLU A 44 1 15 HELIX 2 2 THR A 67 ILE A 82 1 16 HELIX 3 3 PRO A 85 GLU A 87 5 3 HELIX 4 4 PRO A 98 LYS A 102 5 5 HELIX 5 5 PRO A 105 LYS A 122 1 18 HELIX 6 6 PRO A 144 ALA A 162 1 19 HELIX 7 7 ALA A 196 GLY A 215 1 20 HELIX 8 8 ALA A 216 SER A 221 1 6 HELIX 9 9 GLU A 248 THR A 253 1 6 HELIX 10 10 LEU A 254 GLN A 256 5 3 HELIX 11 11 THR A 271 ASP A 281 1 11 HELIX 12 12 GLY A 289 PHE A 311 1 23 HELIX 13 13 THR A 318 GLU A 330 1 13 HELIX 14 14 PRO A 331 LYS A 336 1 6 HELIX 15 15 SER A 341 SER A 352 1 12 HELIX 16 16 ASP A 355 TYR A 360 5 6 HELIX 17 17 HIS A 363 LEU A 377 1 15 HELIX 18 18 PRO A 383 LEU A 391 1 9 HELIX 19 19 SER A 394 ASN A 400 1 7 HELIX 20 20 GLN A 406 ALA A 425 1 20 SHEET 1 A 9 ILE A 23 ILE A 26 0 SHEET 2 A 9 VAL A 48 THR A 53 1 O GLU A 51 N ILE A 26 SHEET 3 A 9 ILE A 89 LEU A 96 1 O ASP A 94 N ALA A 52 SHEET 4 A 9 LYS A 127 LEU A 130 1 O HIS A 129 N LEU A 96 SHEET 5 A 9 VAL A 172 GLY A 176 1 O ILE A 174 N LEU A 130 SHEET 6 A 9 VAL A 223 VAL A 227 1 O VAL A 227 N ILE A 175 SHEET 7 A 9 VAL A 261 ALA A 264 1 O VAL A 261 N VAL A 224 SHEET 8 A 9 PHE A 283 VAL A 288 1 O ILE A 285 N ALA A 264 SHEET 9 A 9 ILE A 23 ILE A 26 1 N SER A 25 O LEU A 286 SHEET 1 B 2 GLU A 233 PHE A 234 0 SHEET 2 B 2 VAL A 239 ILE A 240 -1 O ILE A 240 N GLU A 233 LINK C ALA A 37 N MSE A 38 1555 1555 1.32 LINK C MSE A 38 N LEU A 39 1555 1555 1.34 LINK C GLY A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N THR A 67 1555 1555 1.33 LINK C ALA A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N ALA A 111 1555 1555 1.33 LINK C ALA A 115 N MSE A 116 1555 1555 1.34 LINK C MSE A 116 N ILE A 117 1555 1555 1.33 LINK C SER A 133 N MSE A 134 1555 1555 1.33 LINK C MSE A 134 N GLY A 135 1555 1555 1.31 LINK C GLY A 259 N MSE A 260 1555 1555 1.34 LINK C MSE A 260 N VAL A 261 1555 1555 1.33 LINK C VAL A 326 N MSE A 327 1555 1555 1.31 LINK C MSE A 327 N ARG A 328 1555 1555 1.32 LINK C LEU A 373 N MSE A 374 1555 1555 1.33 LINK C MSE A 374 N SER A 375 1555 1555 1.33 CISPEP 1 GLU A 44 LYS A 45 0 -17.33 CISPEP 2 ALA A 137 GLY A 138 0 -8.61 CRYST1 140.005 140.005 97.356 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007143 0.004124 0.000000 0.00000 SCALE2 0.000000 0.008248 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010272 0.00000