HEADER OXIDOREDUCTASE 23-SEP-11 3TY4 TITLE CRYSTAL STRUCTURE OF HOMOISOCITRATE DEHYDROGENASE FROM TITLE 2 SCHIZOSACCHAROMYCES POMBE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE HOMOISOCITRATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.87; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 284812; SOURCE 5 STRAIN: ATCC 38366 / 972; SOURCE 6 GENE: LYS12, SPAC31G5.04; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS B-HYDROXYACID OXIDATIVE DECARBOXYLASE, AMINO-ACID BIOSYNTHESIS, KEYWDS 2 LYSINE BIOSYNTHESIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.L.BULFER,J.M.HENDERSHOT,R.C.TRIEVEL REVDAT 5 13-SEP-23 3TY4 1 REMARK SEQADV REVDAT 4 08-NOV-17 3TY4 1 REMARK REVDAT 3 27-NOV-13 3TY4 1 JRNL REVDAT 2 14-DEC-11 3TY4 1 JRNL REVDAT 1 09-NOV-11 3TY4 0 JRNL AUTH S.L.BULFER,J.M.HENDERSHOT,R.C.TRIEVEL JRNL TITL CRYSTAL STRUCTURE OF HOMOISOCITRATE DEHYDROGENASE FROM JRNL TITL 2 SCHIZOSACCHAROMYCES POMBE. JRNL REF PROTEINS V. 80 661 2012 JRNL REFN ISSN 0887-3585 JRNL PMID 22105743 JRNL DOI 10.1002/PROT.23231 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 102756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5157 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6731 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 352 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5309 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.31000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.322 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5705 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7787 ; 1.409 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 788 ; 5.296 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 223 ;37.076 ;23.901 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 960 ;11.955 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;21.617 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 912 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4291 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3695 ; 0.740 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5987 ; 1.249 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2010 ; 2.075 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1769 ; 3.319 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 360 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7070 4.5600 9.7630 REMARK 3 T TENSOR REMARK 3 T11: 0.0213 T22: 0.0330 REMARK 3 T33: 0.0195 T12: -0.0174 REMARK 3 T13: 0.0156 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 0.8586 L22: 0.6108 REMARK 3 L33: 1.1572 L12: -0.0250 REMARK 3 L13: 0.4954 L23: 0.0232 REMARK 3 S TENSOR REMARK 3 S11: -0.0318 S12: 0.0820 S13: 0.0444 REMARK 3 S21: -0.0041 S22: 0.0233 S23: -0.0307 REMARK 3 S31: -0.0578 S32: 0.0292 S33: 0.0085 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 360 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1400 -3.6940 43.4380 REMARK 3 T TENSOR REMARK 3 T11: 0.0218 T22: 0.0449 REMARK 3 T33: 0.0221 T12: 0.0151 REMARK 3 T13: 0.0072 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.5105 L22: 0.6657 REMARK 3 L33: 1.6839 L12: 0.1320 REMARK 3 L13: 0.2433 L23: 0.0057 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.0806 S13: -0.0211 REMARK 3 S21: 0.0424 S22: -0.0252 S23: -0.0103 REMARK 3 S31: 0.1245 S32: 0.0258 S33: 0.0176 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3TY4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068065. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103345 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.45900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3TY3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3550, LI ACETATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.22600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 THR A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 HIS A 361 REMARK 465 ASN A 362 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 THR B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 HIS B 361 REMARK 465 ASN B 362 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 LYS A 337 CG CD CE NZ REMARK 470 LYS A 346 CG CD CE NZ REMARK 470 THR B 4 OG1 CG2 REMARK 470 ARG B 5 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 ARG B 54 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 GLU B 61 CG CD OE1 OE2 REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 LYS B 85 CG CD CE NZ REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 ARG B 138 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 142 CG OD1 ND2 REMARK 470 LYS B 176 CG CD CE NZ REMARK 470 LYS B 187 CG CD CE NZ REMARK 470 LYS B 188 CG CD CE NZ REMARK 470 ASN B 198 CG OD1 ND2 REMARK 470 ARG B 297 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 337 CG CD CE NZ REMARK 470 LYS B 346 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 14 -119.93 57.98 REMARK 500 ASP A 121 83.08 -156.08 REMARK 500 ASP A 121 83.08 -158.29 REMARK 500 GLU A 130 -134.25 -132.29 REMARK 500 CYS A 131 -140.81 62.37 REMARK 500 ASP A 246 -92.78 -106.40 REMARK 500 HIS A 318 65.16 -114.59 REMARK 500 ALA B 14 -122.79 58.50 REMARK 500 ALA B 78 148.50 -178.27 REMARK 500 ASP B 121 83.27 -155.03 REMARK 500 GLU B 130 -131.70 -134.27 REMARK 500 CYS B 131 -142.32 60.06 REMARK 500 LYS B 146 30.23 -140.38 REMARK 500 LYS B 196 56.88 -144.48 REMARK 500 MET B 200 67.24 -110.14 REMARK 500 GLU B 241 56.89 -143.23 REMARK 500 ASP B 246 -90.41 -113.04 REMARK 500 GLU B 285 116.06 -166.44 REMARK 500 HIS B 318 59.54 -116.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 365 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 366 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 365 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 366 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 367 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 368 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TY3 RELATED DB: PDB DBREF 3TY4 A 1 362 UNP O14104 LYS12_SCHPO 1 362 DBREF 3TY4 B 1 362 UNP O14104 LYS12_SCHPO 1 362 SEQADV 3TY4 GLY A -3 UNP O14104 EXPRESSION TAG SEQADV 3TY4 SER A -2 UNP O14104 EXPRESSION TAG SEQADV 3TY4 THR A -1 UNP O14104 EXPRESSION TAG SEQADV 3TY4 SER A 0 UNP O14104 EXPRESSION TAG SEQADV 3TY4 GLY B -3 UNP O14104 EXPRESSION TAG SEQADV 3TY4 SER B -2 UNP O14104 EXPRESSION TAG SEQADV 3TY4 THR B -1 UNP O14104 EXPRESSION TAG SEQADV 3TY4 SER B 0 UNP O14104 EXPRESSION TAG SEQRES 1 A 366 GLY SER THR SER MET SER ALA THR ARG ARG ILE VAL LEU SEQRES 2 A 366 GLY LEU ILE PRO ALA ASP GLY ILE GLY LYS GLU VAL VAL SEQRES 3 A 366 PRO ALA ALA ARG ARG LEU MET GLU ASN LEU PRO ALA LYS SEQRES 4 A 366 HIS LYS LEU LYS PHE ASP PHE ILE ASP LEU ASP ALA GLY SEQRES 5 A 366 TRP GLY THR PHE GLU ARG THR GLY LYS ALA LEU PRO GLU SEQRES 6 A 366 ARG THR VAL GLU ARG LEU LYS THR GLU CYS ASN ALA ALA SEQRES 7 A 366 LEU PHE GLY ALA VAL GLN SER PRO THR HIS LYS VAL ALA SEQRES 8 A 366 GLY TYR SER SER PRO ILE VAL ALA LEU ARG LYS LYS MET SEQRES 9 A 366 GLY LEU TYR ALA ASN VAL ARG PRO VAL LYS SER LEU ASP SEQRES 10 A 366 GLY ALA LYS GLY LYS PRO VAL ASP LEU VAL ILE VAL ARG SEQRES 11 A 366 GLU ASN THR GLU CYS LEU TYR VAL LYS GLU GLU ARG MET SEQRES 12 A 366 VAL GLN ASN THR PRO GLY LYS ARG VAL ALA GLU ALA ILE SEQRES 13 A 366 ARG ARG ILE SER GLU GLU ALA SER THR LYS ILE GLY LYS SEQRES 14 A 366 MET ALA PHE GLU ILE ALA LYS SER ARG GLN LYS ILE ARG SEQRES 15 A 366 GLU SER GLY THR TYR SER ILE HIS LYS LYS PRO LEU VAL SEQRES 16 A 366 THR ILE ILE HIS LYS SER ASN VAL MET SER VAL THR ASP SEQRES 17 A 366 GLY LEU PHE ARG GLU SER CYS ARG HIS ALA GLN SER LEU SEQRES 18 A 366 ASP PRO SER TYR ALA SER ILE ASN VAL ASP GLU GLN ILE SEQRES 19 A 366 VAL ASP SER MET VAL TYR ARG LEU PHE ARG GLU PRO GLU SEQRES 20 A 366 CYS PHE ASP VAL VAL VAL ALA PRO ASN LEU TYR GLY ASP SEQRES 21 A 366 ILE LEU SER ASP GLY ALA ALA SER LEU ILE GLY SER LEU SEQRES 22 A 366 GLY LEU VAL PRO SER ALA ASN VAL GLY ASP ASN PHE VAL SEQRES 23 A 366 MET SER GLU PRO VAL HIS GLY SER ALA PRO ASP ILE ALA SEQRES 24 A 366 GLY ARG GLY ILE ALA ASN PRO VAL ALA THR PHE ARG SER SEQRES 25 A 366 VAL ALA LEU MET LEU GLU PHE MET GLY HIS GLN ASP ALA SEQRES 26 A 366 ALA ALA ASP ILE TYR THR ALA VAL ASP LYS VAL LEU THR SEQRES 27 A 366 GLU GLY LYS VAL LEU THR PRO ASP LEU GLY GLY LYS SER SEQRES 28 A 366 GLY THR ASN GLU ILE THR ASP ALA VAL LEU ALA ASN ILE SEQRES 29 A 366 HIS ASN SEQRES 1 B 366 GLY SER THR SER MET SER ALA THR ARG ARG ILE VAL LEU SEQRES 2 B 366 GLY LEU ILE PRO ALA ASP GLY ILE GLY LYS GLU VAL VAL SEQRES 3 B 366 PRO ALA ALA ARG ARG LEU MET GLU ASN LEU PRO ALA LYS SEQRES 4 B 366 HIS LYS LEU LYS PHE ASP PHE ILE ASP LEU ASP ALA GLY SEQRES 5 B 366 TRP GLY THR PHE GLU ARG THR GLY LYS ALA LEU PRO GLU SEQRES 6 B 366 ARG THR VAL GLU ARG LEU LYS THR GLU CYS ASN ALA ALA SEQRES 7 B 366 LEU PHE GLY ALA VAL GLN SER PRO THR HIS LYS VAL ALA SEQRES 8 B 366 GLY TYR SER SER PRO ILE VAL ALA LEU ARG LYS LYS MET SEQRES 9 B 366 GLY LEU TYR ALA ASN VAL ARG PRO VAL LYS SER LEU ASP SEQRES 10 B 366 GLY ALA LYS GLY LYS PRO VAL ASP LEU VAL ILE VAL ARG SEQRES 11 B 366 GLU ASN THR GLU CYS LEU TYR VAL LYS GLU GLU ARG MET SEQRES 12 B 366 VAL GLN ASN THR PRO GLY LYS ARG VAL ALA GLU ALA ILE SEQRES 13 B 366 ARG ARG ILE SER GLU GLU ALA SER THR LYS ILE GLY LYS SEQRES 14 B 366 MET ALA PHE GLU ILE ALA LYS SER ARG GLN LYS ILE ARG SEQRES 15 B 366 GLU SER GLY THR TYR SER ILE HIS LYS LYS PRO LEU VAL SEQRES 16 B 366 THR ILE ILE HIS LYS SER ASN VAL MET SER VAL THR ASP SEQRES 17 B 366 GLY LEU PHE ARG GLU SER CYS ARG HIS ALA GLN SER LEU SEQRES 18 B 366 ASP PRO SER TYR ALA SER ILE ASN VAL ASP GLU GLN ILE SEQRES 19 B 366 VAL ASP SER MET VAL TYR ARG LEU PHE ARG GLU PRO GLU SEQRES 20 B 366 CYS PHE ASP VAL VAL VAL ALA PRO ASN LEU TYR GLY ASP SEQRES 21 B 366 ILE LEU SER ASP GLY ALA ALA SER LEU ILE GLY SER LEU SEQRES 22 B 366 GLY LEU VAL PRO SER ALA ASN VAL GLY ASP ASN PHE VAL SEQRES 23 B 366 MET SER GLU PRO VAL HIS GLY SER ALA PRO ASP ILE ALA SEQRES 24 B 366 GLY ARG GLY ILE ALA ASN PRO VAL ALA THR PHE ARG SER SEQRES 25 B 366 VAL ALA LEU MET LEU GLU PHE MET GLY HIS GLN ASP ALA SEQRES 26 B 366 ALA ALA ASP ILE TYR THR ALA VAL ASP LYS VAL LEU THR SEQRES 27 B 366 GLU GLY LYS VAL LEU THR PRO ASP LEU GLY GLY LYS SER SEQRES 28 B 366 GLY THR ASN GLU ILE THR ASP ALA VAL LEU ALA ASN ILE SEQRES 29 B 366 HIS ASN HET GOL A 363 6 HET GOL A 364 6 HET GOL A 365 6 HET GOL A 366 6 HET GOL B 363 6 HET GOL B 364 6 HET GOL B 365 6 HET GOL B 366 6 HET GOL B 367 6 HET GOL B 368 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 10(C3 H8 O3) FORMUL 13 HOH *500(H2 O) HELIX 1 1 ILE A 17 ASN A 31 1 15 HELIX 2 2 LEU A 32 LYS A 37 5 6 HELIX 3 3 GLY A 48 GLY A 56 1 9 HELIX 4 4 PRO A 60 CYS A 71 1 12 HELIX 5 5 SER A 91 MET A 100 1 10 HELIX 6 6 GLU A 130 LYS A 135 5 6 HELIX 7 7 GLU A 157 SER A 180 1 24 HELIX 8 8 VAL A 202 GLN A 215 1 14 HELIX 9 9 SER A 216 ALA A 222 5 7 HELIX 10 10 VAL A 231 GLU A 241 1 11 HELIX 11 11 PRO A 242 PHE A 245 5 4 HELIX 12 12 PRO A 251 SER A 264 1 14 HELIX 13 13 LEU A 265 GLY A 267 5 3 HELIX 14 14 SER A 268 VAL A 272 5 5 HELIX 15 15 PRO A 302 MET A 316 1 15 HELIX 16 16 HIS A 318 GLY A 336 1 19 HELIX 17 17 THR A 340 GLY A 344 5 5 HELIX 18 18 GLY A 348 ILE A 360 1 13 HELIX 19 19 ILE B 17 ASN B 31 1 15 HELIX 20 20 LEU B 32 HIS B 36 5 5 HELIX 21 21 GLY B 48 GLY B 56 1 9 HELIX 22 22 PRO B 60 CYS B 71 1 12 HELIX 23 23 SER B 91 MET B 100 1 10 HELIX 24 24 GLU B 130 LYS B 135 5 6 HELIX 25 25 GLU B 157 SER B 180 1 24 HELIX 26 26 MET B 200 GLN B 215 1 16 HELIX 27 27 SER B 216 ALA B 222 5 7 HELIX 28 28 VAL B 231 GLU B 241 1 11 HELIX 29 29 PRO B 242 PHE B 245 5 4 HELIX 30 30 PRO B 251 SER B 264 1 14 HELIX 31 31 SER B 268 VAL B 272 5 5 HELIX 32 32 PRO B 302 MET B 316 1 15 HELIX 33 33 HIS B 318 GLY B 336 1 19 HELIX 34 34 THR B 340 GLY B 344 5 5 HELIX 35 35 GLY B 348 ILE B 360 1 13 SHEET 1 A10 LYS A 39 ASP A 44 0 SHEET 2 A10 ARG A 6 ALA A 14 1 N LEU A 11 O ILE A 43 SHEET 3 A10 ALA A 73 ALA A 78 1 O LEU A 75 N ILE A 12 SHEET 4 A10 VAL A 282 SER A 284 1 O SER A 284 N PHE A 76 SHEET 5 A10 ALA A 275 VAL A 277 -1 N ASN A 276 O MET A 283 SHEET 6 A10 ALA A 104 LYS A 110 -1 N VAL A 106 O ALA A 275 SHEET 7 A10 ASP A 121 GLU A 127 -1 O ARG A 126 N ASN A 105 SHEET 8 A10 VAL A 247 ALA A 250 1 O VAL A 248 N VAL A 125 SHEET 9 A10 LEU A 190 HIS A 195 1 N THR A 192 O VAL A 249 SHEET 10 A10 ASN A 225 ILE A 230 1 O ASP A 227 N ILE A 193 SHEET 1 B 4 GLU A 137 GLN A 141 0 SHEET 2 B 4 VAL A 148 SER A 156 -1 O GLU A 150 N ARG A 138 SHEET 3 B 4 VAL B 148 SER B 156 -1 O ILE B 155 N ALA A 149 SHEET 4 B 4 GLU B 137 GLN B 141 -1 N ARG B 138 O GLU B 150 SHEET 1 C10 LEU B 38 ASP B 44 0 SHEET 2 C10 ARG B 5 ALA B 14 1 N LEU B 11 O ILE B 43 SHEET 3 C10 ALA B 73 ALA B 78 1 O LEU B 75 N ILE B 12 SHEET 4 C10 VAL B 282 SER B 284 1 O SER B 284 N PHE B 76 SHEET 5 C10 ALA B 275 VAL B 277 -1 N ASN B 276 O MET B 283 SHEET 6 C10 ALA B 104 LYS B 110 -1 N VAL B 106 O ALA B 275 SHEET 7 C10 ASP B 121 GLU B 127 -1 O ARG B 126 N ASN B 105 SHEET 8 C10 VAL B 247 ALA B 250 1 O VAL B 248 N VAL B 125 SHEET 9 C10 LEU B 190 HIS B 195 1 N THR B 192 O VAL B 249 SHEET 10 C10 ASN B 225 ILE B 230 1 O ASP B 227 N ILE B 193 SITE 1 AC1 9 ASP A 44 LEU A 45 ASP A 46 THR A 63 SITE 2 AC1 9 ARG A 66 HOH A 447 ARG B 27 ASN B 350 SITE 3 AC1 9 HOH B 575 SITE 1 AC2 6 HIS A 186 LYS A 188 CYS A 244 HOH A 367 SITE 2 AC2 6 HOH A 466 HOH A 539 SITE 1 AC3 6 ILE A 17 HIS A 288 ALA A 300 ASN A 301 SITE 2 AC3 6 ASP A 342 HOH A 505 SITE 1 AC4 4 ASP A 260 HOH A 591 SER B 233 TYR B 236 SITE 1 AC5 8 LYS B 110 ASP B 121 ARG B 174 ILE B 177 SITE 2 AC5 8 ARG B 178 SER B 184 GOL B 365 HOH B 388 SITE 1 AC6 6 ILE B 170 SER B 173 GLU B 314 HOH B 395 SITE 2 AC6 6 HOH B 483 HOH B 595 SITE 1 AC7 8 PRO B 108 ARG B 174 GLU B 314 GOL B 363 SITE 2 AC7 8 HOH B 383 HOH B 385 HOH B 388 HOH B 395 SITE 1 AC8 5 ARG B 26 PHE B 42 ASP B 44 HOH B 407 SITE 2 AC8 5 HOH B 414 SITE 1 AC9 5 HIS B 186 LYS B 188 LEU B 190 CYS B 244 SITE 2 AC9 5 HOH B 539 SITE 1 BC1 6 SER A 233 TYR A 236 ARG B 107 ASP B 260 SITE 2 BC1 6 HOH B 647 HOH B 661 CRYST1 52.851 94.452 76.076 90.00 106.63 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018921 0.000000 0.005651 0.00000 SCALE2 0.000000 0.010587 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013719 0.00000