HEADER TRANSFERASE 27-SEP-11 3TZT TITLE THE STRUCTURE OF A PROTEIN IN GLYCOSYL TRANSFERASE FAMILY 8 FROM TITLE 2 ANAEROCOCCUS PREVOTII. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYL TRANSFERASE FAMILY 8; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANAEROCOCCUS PREVOTII; SOURCE 3 ORGANISM_COMMON: PEPTOSTREPTOCOCCUS PREVOTII; SOURCE 4 ORGANISM_TAXID: 525919; SOURCE 5 STRAIN: DSM 20548; SOURCE 6 GENE: APRE_0416; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, PUTATIVE GLYCOSYL TRANSFERASE, GENERAL STRESS KEYWDS 3 PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,C.TESAR,J.BEARDEN,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 08-NOV-17 3TZT 1 REMARK REVDAT 2 09-OCT-13 3TZT 1 ATOM REVDAT 1 07-DEC-11 3TZT 0 JRNL AUTH M.E.CUFF,C.TESAR,J.BEARDEN,A.JOACHIMIAK JRNL TITL THE STRUCTURE OF A PROTEIN IN GLYCOSYL TRANSFERASE FAMILY 8 JRNL TITL 2 FROM ANAEROCOCCUS PREVOTII. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 30241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1518 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1598 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3839 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 263 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.167 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4028 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2775 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5451 ; 1.590 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6736 ; 0.963 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 6.258 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;37.748 ;23.568 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 712 ;16.207 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;20.638 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 595 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4390 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 843 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): -2.9698 29.0854 23.2813 REMARK 3 T TENSOR REMARK 3 T11: 0.0318 T22: 0.0851 REMARK 3 T33: 0.0965 T12: 0.0356 REMARK 3 T13: -0.0020 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.5641 L22: 1.4463 REMARK 3 L33: 1.6431 L12: 0.5366 REMARK 3 L13: -0.2945 L23: -0.7739 REMARK 3 S TENSOR REMARK 3 S11: 0.0567 S12: -0.0500 S13: -0.0746 REMARK 3 S21: 0.0345 S22: -0.0842 S23: -0.0032 REMARK 3 S31: 0.0240 S32: -0.0041 S33: 0.0275 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6867 43.3929 8.5227 REMARK 3 T TENSOR REMARK 3 T11: 0.1211 T22: 0.1013 REMARK 3 T33: 0.0935 T12: 0.0802 REMARK 3 T13: -0.0014 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.7558 L22: 1.5332 REMARK 3 L33: 1.1196 L12: 0.5379 REMARK 3 L13: -0.3310 L23: -0.5675 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: 0.0989 S13: 0.1187 REMARK 3 S21: -0.2249 S22: 0.0303 S23: 0.1255 REMARK 3 S31: -0.1056 S32: -0.1088 S33: -0.0573 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3TZT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068126. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918, 0.97929 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31606 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.58800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM 6.1, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4, COO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMONIUM CITRATE DIBASIC, 20% PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K, PH 5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.24900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.39700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.66550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.39700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.24900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.66550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: LIKELY THE AB DIMER IN THE AU. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ASP A 69 REMARK 465 LEU A 70 REMARK 465 PHE A 71 REMARK 465 SER A 72 REMARK 465 PHE A 73 REMARK 465 ALA A 74 REMARK 465 LYS A 75 REMARK 465 VAL A 76 REMARK 465 THR A 77 REMARK 465 ASP A 78 REMARK 465 ARG A 79 REMARK 465 TYR A 80 REMARK 465 THR A 133 REMARK 465 GLY A 134 REMARK 465 LYS A 135 REMARK 465 THR A 136 REMARK 465 ASP A 137 REMARK 465 MSE A 138 REMARK 465 ALA A 139 REMARK 465 ASN A 140 REMARK 465 ASN A 141 REMARK 465 VAL A 142 REMARK 465 ASN A 143 REMARK 465 ARG A 144 REMARK 465 ILE A 145 REMARK 465 ARG A 146 REMARK 465 LEU A 147 REMARK 465 GLY A 148 REMARK 465 THR A 149 REMARK 465 ASP A 150 REMARK 465 THR A 151 REMARK 465 ASP A 152 REMARK 465 HIS A 183 REMARK 465 MSE A 184 REMARK 465 ASN A 185 REMARK 465 LEU A 186 REMARK 465 LEU A 187 REMARK 465 LEU A 188 REMARK 465 PRO A 189 REMARK 465 ASP A 190 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 ASP B 68 REMARK 465 ASP B 69 REMARK 465 LEU B 70 REMARK 465 PHE B 71 REMARK 465 SER B 72 REMARK 465 PHE B 73 REMARK 465 ALA B 74 REMARK 465 LYS B 75 REMARK 465 VAL B 76 REMARK 465 THR B 77 REMARK 465 ASP B 78 REMARK 465 ARG B 79 REMARK 465 TYR B 80 REMARK 465 PRO B 81 REMARK 465 THR B 133 REMARK 465 GLY B 134 REMARK 465 LYS B 135 REMARK 465 THR B 136 REMARK 465 ASP B 137 REMARK 465 MSE B 138 REMARK 465 ALA B 139 REMARK 465 ASN B 140 REMARK 465 ASN B 141 REMARK 465 VAL B 142 REMARK 465 ASN B 143 REMARK 465 ARG B 144 REMARK 465 ILE B 145 REMARK 465 ARG B 146 REMARK 465 LEU B 147 REMARK 465 GLY B 148 REMARK 465 THR B 149 REMARK 465 ASP B 150 REMARK 465 THR B 151 REMARK 465 GLU B 180 REMARK 465 ASP B 181 REMARK 465 ASN B 182 REMARK 465 HIS B 183 REMARK 465 MSE B 184 REMARK 465 ASN B 185 REMARK 465 LEU B 186 REMARK 465 LEU B 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 68 CG OD1 OD2 REMARK 470 GLN A 191 CG CD OE1 NE2 REMARK 470 ASP B 10 CG OD1 OD2 REMARK 470 LYS B 82 CG CD CE NZ REMARK 470 MSE B 84 CG SE CE REMARK 470 GLN B 191 CG CD OE1 NE2 REMARK 470 ASP B 192 CG OD1 OD2 REMARK 470 ILE B 193 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 241 CG HIS B 241 CD2 0.054 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 105 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 124 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG B 270 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 107 47.04 -88.77 REMARK 500 ASN A 211 60.46 -165.13 REMARK 500 ARG B 41 65.53 -158.50 REMARK 500 ARG B 41 69.61 -160.70 REMARK 500 ASP B 107 41.63 -88.64 REMARK 500 PRO B 189 -170.61 -69.83 REMARK 500 ASN B 211 60.21 -165.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC100377 RELATED DB: TARGETDB DBREF 3TZT A 1 273 UNP C7RG54 C7RG54_ANAPD 1 273 DBREF 3TZT B 1 273 UNP C7RG54 C7RG54_ANAPD 1 273 SEQADV 3TZT SER A -2 UNP C7RG54 EXPRESSION TAG SEQADV 3TZT ASN A -1 UNP C7RG54 EXPRESSION TAG SEQADV 3TZT ALA A 0 UNP C7RG54 EXPRESSION TAG SEQADV 3TZT SER B -2 UNP C7RG54 EXPRESSION TAG SEQADV 3TZT ASN B -1 UNP C7RG54 EXPRESSION TAG SEQADV 3TZT ALA B 0 UNP C7RG54 EXPRESSION TAG SEQRES 1 A 276 SER ASN ALA MSE ALA ASP ALA LEU LEU LEU THR LEU ASP SEQRES 2 A 276 GLU ASN TYR ILE PRO GLN MSE LYS VAL LEU MSE THR SER SEQRES 3 A 276 ILE TYR ILE ASN ASN PRO GLY ARG ILE PHE ASP VAL TYR SEQRES 4 A 276 LEU ILE HIS SER ARG ILE SER GLU ASP LYS LEU LYS ASP SEQRES 5 A 276 LEU GLY GLU ASP LEU LYS LYS PHE SER TYR THR LEU TYR SEQRES 6 A 276 PRO ILE ARG ALA THR ASP ASP LEU PHE SER PHE ALA LYS SEQRES 7 A 276 VAL THR ASP ARG TYR PRO LYS GLU MSE TYR TYR ARG LEU SEQRES 8 A 276 LEU ALA GLY GLU PHE LEU PRO GLU ASN LEU GLY GLU ILE SEQRES 9 A 276 LEU TYR LEU ASP PRO ASP MSE LEU VAL ILE ASN PRO LEU SEQRES 10 A 276 ASP ASP LEU LEU ARG THR ASP ILE SER ASP TYR ILE LEU SEQRES 11 A 276 ALA ALA ALA SER HIS THR GLY LYS THR ASP MSE ALA ASN SEQRES 12 A 276 ASN VAL ASN ARG ILE ARG LEU GLY THR ASP THR ASP TYR SEQRES 13 A 276 TYR ASN SER GLY LEU LEU LEU ILE ASN LEU LYS ARG ALA SEQRES 14 A 276 ARG GLU GLU ILE ASP PRO ASP GLU ILE PHE SER PHE VAL SEQRES 15 A 276 GLU ASP ASN HIS MSE ASN LEU LEU LEU PRO ASP GLN ASP SEQRES 16 A 276 ILE LEU ASN ALA MSE TYR GLY ASP ARG ILE TYR PRO LEU SEQRES 17 A 276 ASP ASP LEU ILE TYR ASN TYR ASP ALA ARG ASN TYR SER SEQRES 18 A 276 SER TYR LEU ILE ARG SER LYS LYS GLN ALA ASP LEU ALA SEQRES 19 A 276 TRP LEU MSE ASP HIS THR VAL VAL LEU HIS PHE CYS GLY SEQRES 20 A 276 ARG ASP LYS PRO TRP LYS LYS ASN HIS ARG ASN LYS PHE SEQRES 21 A 276 THR SER LEU TYR LYS HIS TYR MSE SER LEU THR LYS ARG SEQRES 22 A 276 TYR LEU ALA SEQRES 1 B 276 SER ASN ALA MSE ALA ASP ALA LEU LEU LEU THR LEU ASP SEQRES 2 B 276 GLU ASN TYR ILE PRO GLN MSE LYS VAL LEU MSE THR SER SEQRES 3 B 276 ILE TYR ILE ASN ASN PRO GLY ARG ILE PHE ASP VAL TYR SEQRES 4 B 276 LEU ILE HIS SER ARG ILE SER GLU ASP LYS LEU LYS ASP SEQRES 5 B 276 LEU GLY GLU ASP LEU LYS LYS PHE SER TYR THR LEU TYR SEQRES 6 B 276 PRO ILE ARG ALA THR ASP ASP LEU PHE SER PHE ALA LYS SEQRES 7 B 276 VAL THR ASP ARG TYR PRO LYS GLU MSE TYR TYR ARG LEU SEQRES 8 B 276 LEU ALA GLY GLU PHE LEU PRO GLU ASN LEU GLY GLU ILE SEQRES 9 B 276 LEU TYR LEU ASP PRO ASP MSE LEU VAL ILE ASN PRO LEU SEQRES 10 B 276 ASP ASP LEU LEU ARG THR ASP ILE SER ASP TYR ILE LEU SEQRES 11 B 276 ALA ALA ALA SER HIS THR GLY LYS THR ASP MSE ALA ASN SEQRES 12 B 276 ASN VAL ASN ARG ILE ARG LEU GLY THR ASP THR ASP TYR SEQRES 13 B 276 TYR ASN SER GLY LEU LEU LEU ILE ASN LEU LYS ARG ALA SEQRES 14 B 276 ARG GLU GLU ILE ASP PRO ASP GLU ILE PHE SER PHE VAL SEQRES 15 B 276 GLU ASP ASN HIS MSE ASN LEU LEU LEU PRO ASP GLN ASP SEQRES 16 B 276 ILE LEU ASN ALA MSE TYR GLY ASP ARG ILE TYR PRO LEU SEQRES 17 B 276 ASP ASP LEU ILE TYR ASN TYR ASP ALA ARG ASN TYR SER SEQRES 18 B 276 SER TYR LEU ILE ARG SER LYS LYS GLN ALA ASP LEU ALA SEQRES 19 B 276 TRP LEU MSE ASP HIS THR VAL VAL LEU HIS PHE CYS GLY SEQRES 20 B 276 ARG ASP LYS PRO TRP LYS LYS ASN HIS ARG ASN LYS PHE SEQRES 21 B 276 THR SER LEU TYR LYS HIS TYR MSE SER LEU THR LYS ARG SEQRES 22 B 276 TYR LEU ALA MODRES 3TZT MSE A 1 MET SELENOMETHIONINE MODRES 3TZT MSE A 17 MET SELENOMETHIONINE MODRES 3TZT MSE A 21 MET SELENOMETHIONINE MODRES 3TZT MSE A 84 MET SELENOMETHIONINE MODRES 3TZT MSE A 108 MET SELENOMETHIONINE MODRES 3TZT MSE A 197 MET SELENOMETHIONINE MODRES 3TZT MSE A 234 MET SELENOMETHIONINE MODRES 3TZT MSE A 265 MET SELENOMETHIONINE MODRES 3TZT MSE B 17 MET SELENOMETHIONINE MODRES 3TZT MSE B 21 MET SELENOMETHIONINE MODRES 3TZT MSE B 84 MET SELENOMETHIONINE MODRES 3TZT MSE B 108 MET SELENOMETHIONINE MODRES 3TZT MSE B 197 MET SELENOMETHIONINE MODRES 3TZT MSE B 234 MET SELENOMETHIONINE MODRES 3TZT MSE B 265 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 17 8 HET MSE A 21 8 HET MSE A 84 16 HET MSE A 108 8 HET MSE A 197 8 HET MSE A 234 8 HET MSE A 265 8 HET MSE B 17 8 HET MSE B 21 8 HET MSE B 84 5 HET MSE B 108 8 HET MSE B 197 8 HET MSE B 234 8 HET MSE B 265 8 HET EDO A 301 4 HET EDO A 302 4 HET CIT A 303 13 HET EDO A 304 4 HET EDO B 301 4 HET EDO B 302 4 HET EDO B 303 4 HET EDO B 304 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM CIT CITRIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 3 EDO 7(C2 H6 O2) FORMUL 5 CIT C6 H8 O7 FORMUL 11 HOH *263(H2 O) HELIX 1 1 ASP A 10 ASN A 12 5 3 HELIX 2 2 TYR A 13 ASN A 28 1 16 HELIX 3 3 SER A 43 LYS A 56 1 14 HELIX 4 4 LYS A 82 LEU A 89 1 8 HELIX 5 5 LEU A 89 LEU A 94 1 6 HELIX 6 6 LEU A 114 ARG A 119 1 6 HELIX 7 7 LEU A 163 ILE A 170 1 8 HELIX 8 8 ASP A 171 ASN A 182 1 12 HELIX 9 9 ASP A 192 GLY A 199 1 8 HELIX 10 10 ASP A 207 ASN A 211 1 5 HELIX 11 11 ASN A 216 SER A 224 1 9 HELIX 12 12 ASP A 229 THR A 237 1 9 HELIX 13 13 PHE A 257 LEU A 272 1 16 HELIX 14 14 ASP B 10 ASN B 12 5 3 HELIX 15 15 TYR B 13 ASN B 28 1 16 HELIX 16 16 SER B 43 LYS B 56 1 14 HELIX 17 17 GLU B 83 LEU B 89 1 7 HELIX 18 18 LEU B 89 LEU B 94 1 6 HELIX 19 19 LEU B 114 THR B 120 1 7 HELIX 20 20 LEU B 163 ILE B 170 1 8 HELIX 21 21 ASP B 171 VAL B 179 1 9 HELIX 22 22 ASP B 190 GLY B 199 1 10 HELIX 23 23 ASP B 207 ASN B 211 1 5 HELIX 24 24 ASN B 216 SER B 224 1 9 HELIX 25 25 ASP B 229 THR B 237 1 9 HELIX 26 26 PHE B 257 LEU B 272 1 16 SHEET 1 A 7 THR A 60 ARG A 65 0 SHEET 2 A 7 PHE A 33 HIS A 39 1 N VAL A 35 O THR A 60 SHEET 3 A 7 ASP A 3 THR A 8 1 N LEU A 5 O TYR A 36 SHEET 4 A 7 GLU B 100 LEU B 104 1 O LEU B 102 N LEU A 6 SHEET 5 A 7 LEU B 158 ASN B 162 -1 O LEU B 159 N TYR B 103 SHEET 6 A 7 LEU B 127 SER B 131 -1 N ALA B 128 O LEU B 160 SHEET 7 A 7 ILE B 202 ASP B 206 1 O TYR B 203 N LEU B 127 SHEET 1 B 7 ILE A 202 ASP A 206 0 SHEET 2 B 7 LEU A 127 SER A 131 1 N ALA A 129 O LEU A 205 SHEET 3 B 7 LEU A 158 ASN A 162 -1 O LEU A 160 N ALA A 128 SHEET 4 B 7 GLU A 100 LEU A 104 -1 N ILE A 101 O ILE A 161 SHEET 5 B 7 ASP B 3 THR B 8 1 O LEU B 6 N LEU A 102 SHEET 6 B 7 PHE B 33 HIS B 39 1 O TYR B 36 N LEU B 5 SHEET 7 B 7 THR B 60 ARG B 65 1 O TYR B 62 N VAL B 35 SHEET 1 C 3 MSE A 108 VAL A 110 0 SHEET 2 C 3 VAL A 239 HIS A 241 -1 O LEU A 240 N LEU A 109 SHEET 3 C 3 TYR A 212 ASP A 213 1 N TYR A 212 O HIS A 241 SHEET 1 D 3 MSE B 108 VAL B 110 0 SHEET 2 D 3 VAL B 239 HIS B 241 -1 O LEU B 240 N LEU B 109 SHEET 3 D 3 TYR B 212 ASP B 213 1 N TYR B 212 O HIS B 241 LINK C GLN A 16 N MSE A 17 1555 1555 1.33 LINK C MSE A 17 N LYS A 18 1555 1555 1.33 LINK C LEU A 20 N MSE A 21 1555 1555 1.34 LINK C MSE A 21 N THR A 22 1555 1555 1.33 LINK C GLU A 83 N AMSE A 84 1555 1555 1.34 LINK C GLU A 83 N BMSE A 84 1555 1555 1.33 LINK C AMSE A 84 N TYR A 85 1555 1555 1.33 LINK C BMSE A 84 N TYR A 85 1555 1555 1.34 LINK C ASP A 107 N MSE A 108 1555 1555 1.33 LINK C MSE A 108 N LEU A 109 1555 1555 1.32 LINK C ALA A 196 N MSE A 197 1555 1555 1.33 LINK C MSE A 197 N TYR A 198 1555 1555 1.35 LINK C LEU A 233 N MSE A 234 1555 1555 1.33 LINK C MSE A 234 N ASP A 235 1555 1555 1.32 LINK C TYR A 264 N MSE A 265 1555 1555 1.33 LINK C MSE A 265 N SER A 266 1555 1555 1.33 LINK C GLN B 16 N MSE B 17 1555 1555 1.34 LINK C MSE B 17 N LYS B 18 1555 1555 1.32 LINK C LEU B 20 N MSE B 21 1555 1555 1.33 LINK C MSE B 21 N THR B 22 1555 1555 1.32 LINK C GLU B 83 N MSE B 84 1555 1555 1.34 LINK C MSE B 84 N TYR B 85 1555 1555 1.32 LINK C ASP B 107 N MSE B 108 1555 1555 1.33 LINK C MSE B 108 N LEU B 109 1555 1555 1.33 LINK C ALA B 196 N MSE B 197 1555 1555 1.33 LINK C MSE B 197 N TYR B 198 1555 1555 1.33 LINK C LEU B 233 N MSE B 234 1555 1555 1.34 LINK C MSE B 234 N ASP B 235 1555 1555 1.33 LINK C TYR B 264 N MSE B 265 1555 1555 1.31 LINK C MSE B 265 N SER B 266 1555 1555 1.32 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ALA A 2 1555 1555 1.33 SITE 1 AC1 5 ASP A 116 THR A 120 TYR A 210 HOH A 430 SITE 2 AC1 5 HOH A 473 SITE 1 AC2 5 ASP A 3 ALA A 4 ILE A 101 LEU A 118 SITE 2 AC2 5 HOH A 538 SITE 1 AC3 7 ARG A 165 ARG A 254 ASN A 255 LYS A 256 SITE 2 AC3 7 HOH A 426 ARG B 254 LYS B 256 SITE 1 AC4 5 ASP A 34 THR A 60 TYR A 62 TYR B 36 SITE 2 AC4 5 TYR B 62 SITE 1 AC5 6 LYS A 262 MSE A 265 SER A 266 LYS A 269 SITE 2 AC5 6 ALA B 231 ASP B 235 SITE 1 AC6 3 ASP B 3 ALA B 4 LEU B 118 SITE 1 AC7 6 ASP B 105 ASP B 107 HIS B 241 GLY B 244 SITE 2 AC7 6 ARG B 245 LYS B 247 SITE 1 AC8 3 HIS B 132 ASP B 207 ASN B 211 CRYST1 42.498 99.331 122.794 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023531 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010067 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008144 0.00000