HEADER OXIDOREDUCTASE 29-SEP-11 3U1H TITLE CRYSTAL STRUCTURE OF IPMDH FROM THE LAST COMMON ANCESTOR OF BACILLUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-ISOPROPYLMALATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.85; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SP.; SOURCE 3 ORGANISM_TAXID: 1409; SOURCE 4 GENE: LEUB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEX HTB KEYWDS ISOCITRATE/ISOPROPYLMALATE DEHYDROGENASE-LIKE FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.HAANING,J.K.HOBBS,C.R.MONK,V.L.ARCUS REVDAT 2 01-NOV-23 3U1H 1 REMARK REVDAT 1 02-NOV-11 3U1H 0 JRNL AUTH J.K.HOBBS,C.SHEPHERD,D.J.SAUL,N.J.DEMETRAS,S.HAANING, JRNL AUTH 2 C.R.MONK,R.M.DANIEL,V.L.ARCUS JRNL TITL ON THE ORIGIN AND EVOLUTION OF THERMOPHILY: RECONSTRUCTION JRNL TITL 2 OF FUNCTIONAL PRECAMBRIAN ENZYMES FROM ANCESTORS OF BACILLUS JRNL REF MOL.BIOL.EVOL. 2011 JRNL REFN ESSN 1537-1719 JRNL PMID 21998276 JRNL DOI 10.1093/MOLBEV/MSR253 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 22331 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1124 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1409 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.3520 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5212 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.78000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : -0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.445 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.403 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.013 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5289 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7185 ; 1.550 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 708 ; 6.791 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;37.704 ;24.821 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 865 ;22.192 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;23.235 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 858 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3927 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3526 ; 0.597 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5599 ; 1.129 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1763 ; 1.506 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1586 ; 2.703 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 364 4 REMARK 3 1 B 3 B 364 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2574 ; 0.370 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2574 ; 0.510 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3U1H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1000068186. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MSC OSMIC OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22393 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 44.549 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.56600 REMARK 200 R SYM FOR SHELL (I) : 0.56600 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 1V53 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM DIAMMONIUM HYDROGEN CITRATE, 2MM REMARK 280 MGSO4, 15% PEG 3350, 4% GLYCEROL, PH 5.5, TEMPERATURE 291K, REMARK 280 VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.63300 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.61250 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.63300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.61250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 ASP A -14 REMARK 465 TYR A -13 REMARK 465 ASP A -12 REMARK 465 ILE A -11 REMARK 465 PRO A -10 REMARK 465 THR A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLY A 143 REMARK 465 GLU A 144 REMARK 465 PRO A 145 REMARK 465 SER A 146 REMARK 465 GLU A 147 REMARK 465 ARG A 148 REMARK 465 TYR A 149 REMARK 465 MET A 365 REMARK 465 THR A 366 REMARK 465 ALA A 367 REMARK 465 TYR A 368 REMARK 465 VAL A 369 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 ASP B -14 REMARK 465 TYR B -13 REMARK 465 ASP B -12 REMARK 465 ILE B -11 REMARK 465 PRO B -10 REMARK 465 THR B -9 REMARK 465 THR B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 PHE B 142 REMARK 465 GLY B 143 REMARK 465 GLU B 144 REMARK 465 PRO B 145 REMARK 465 SER B 146 REMARK 465 GLU B 147 REMARK 465 ARG B 148 REMARK 465 TYR B 149 REMARK 465 ALA B 367 REMARK 465 TYR B 368 REMARK 465 VAL B 369 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 ARG A 31 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 LEU A 42 CG CD1 CD2 REMARK 470 GLU A 50 CG CD OE1 OE2 REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 ASP A 80 CG OD1 OD2 REMARK 470 GLN A 81 CG CD OE1 NE2 REMARK 470 ASN A 82 CG OD1 ND2 REMARK 470 SER A 84 OG REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 LEU A 86 CG CD1 CD2 REMARK 470 ARG A 87 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 LEU A 93 CG CD1 CD2 REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 ASP A 100 CG OD1 OD2 REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 470 LYS A 323 CG CD CE NZ REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 GLU A 346 CG CD OE1 OE2 REMARK 470 GLU A 358 CG CD OE1 OE2 REMARK 470 SER A 362 OG REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 ARG B 31 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 LEU B 42 CG CD1 CD2 REMARK 470 GLU B 50 CG CD OE1 OE2 REMARK 470 GLU B 58 CG CD OE1 OE2 REMARK 470 GLN B 81 CG CD OE1 NE2 REMARK 470 ASN B 82 CG OD1 ND2 REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 ARG B 87 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 LYS B 97 CG CD CE NZ REMARK 470 LYS B 183 CG CD CE NZ REMARK 470 GLU B 312 CG CD OE1 OE2 REMARK 470 LYS B 323 CG CD CE NZ REMARK 470 GLU B 358 CG CD OE1 OE2 REMARK 470 MET B 365 CG SD CE REMARK 470 THR B 366 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 120 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 49 -85.99 -73.80 REMARK 500 GLU A 50 -13.77 -47.90 REMARK 500 LEU A 60 -35.37 -38.70 REMARK 500 LYS A 78 -38.29 -37.09 REMARK 500 SER A 84 -2.60 86.84 REMARK 500 GLU A 85 14.75 55.22 REMARK 500 GLU A 89 -78.46 -156.12 REMARK 500 ALA A 115 8.89 -55.99 REMARK 500 LEU A 140 170.81 -55.13 REMARK 500 TYR A 141 -102.89 56.14 REMARK 500 GLU A 151 153.46 -48.62 REMARK 500 ARG A 181 -136.91 -129.43 REMARK 500 LYS A 190 52.77 -111.94 REMARK 500 VAL A 193 -35.75 -153.58 REMARK 500 ASN A 231 63.46 -162.27 REMARK 500 ASP A 236 -70.00 -117.61 REMARK 500 LEU A 259 -9.88 -54.97 REMARK 500 ALA A 282 78.26 23.99 REMARK 500 ALA A 320 -71.55 -61.91 REMARK 500 ALA A 332 -55.21 -28.46 REMARK 500 ALA A 360 -166.73 -100.54 REMARK 500 THR A 361 -71.51 -110.00 REMARK 500 ALA A 363 -156.88 -74.92 REMARK 500 ASP B 11 -161.39 -122.06 REMARK 500 GLU B 16 -72.84 -37.35 REMARK 500 ALA B 20 -79.69 -46.87 REMARK 500 ALA B 21 -39.33 -38.64 REMARK 500 ALA B 51 15.67 -170.08 REMARK 500 SER B 84 -7.56 76.88 REMARK 500 GLU B 85 15.89 51.53 REMARK 500 ARG B 87 36.87 -156.63 REMARK 500 PRO B 88 40.85 -76.98 REMARK 500 LYS B 90 65.00 -112.63 REMARK 500 GLU B 153 156.52 -47.18 REMARK 500 ARG B 181 -120.50 -115.24 REMARK 500 VAL B 193 -24.38 -140.70 REMARK 500 ASN B 231 53.53 -170.44 REMARK 500 ASP B 236 -79.83 -111.72 REMARK 500 SER B 249 -66.60 -28.97 REMARK 500 HIS B 279 151.19 -47.07 REMARK 500 ALA B 282 68.18 33.68 REMARK 500 ILE B 364 30.36 35.15 REMARK 500 MET B 365 -141.05 -172.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST. DBREF 3U1H A -20 369 PDB 3U1H 3U1H -20 369 DBREF 3U1H B -20 369 PDB 3U1H 3U1H -20 369 SEQRES 1 A 390 HIS HIS HIS HIS HIS HIS ASP TYR ASP ILE PRO THR THR SEQRES 2 A 390 GLU ASN LEU TYR PHE GLN GLY ALA MET LYS LYS LYS ILE SEQRES 3 A 390 ALA VAL LEU PRO GLY ASP GLY ILE GLY PRO GLU VAL MET SEQRES 4 A 390 GLU ALA ALA ILE GLU VAL LEU LYS ALA VAL ALA GLU ARG SEQRES 5 A 390 PHE GLY HIS GLU PHE GLU PHE GLU TYR GLY LEU ILE GLY SEQRES 6 A 390 GLY ALA ALA ILE ASP GLU ALA GLY THR PRO LEU PRO GLU SEQRES 7 A 390 GLU THR LEU ASP VAL CYS ARG GLY SER ASP ALA ILE LEU SEQRES 8 A 390 LEU GLY ALA VAL GLY GLY PRO LYS TRP ASP GLN ASN PRO SEQRES 9 A 390 SER GLU LEU ARG PRO GLU LYS GLY LEU LEU GLY ILE ARG SEQRES 10 A 390 LYS GLY LEU ASP LEU PHE ALA ASN LEU ARG PRO VAL LYS SEQRES 11 A 390 VAL TYR ASP SER LEU ALA ASP ALA SER PRO LEU LYS LYS SEQRES 12 A 390 GLU VAL ILE GLU GLY VAL ASP LEU VAL ILE VAL ARG GLU SEQRES 13 A 390 LEU THR GLY GLY LEU TYR PHE GLY GLU PRO SER GLU ARG SEQRES 14 A 390 TYR GLU GLU GLY GLU GLU ALA ALA VAL ASP THR LEU LEU SEQRES 15 A 390 TYR THR ARG GLU GLU ILE GLU ARG ILE ILE ARG LYS ALA SEQRES 16 A 390 PHE GLU LEU ALA LEU THR ARG LYS LYS LYS VAL THR SER SEQRES 17 A 390 VAL ASP LYS ALA ASN VAL LEU GLU SER SER ARG LEU TRP SEQRES 18 A 390 ARG GLU VAL ALA GLU GLU VAL ALA LYS GLU TYR PRO ASP SEQRES 19 A 390 VAL GLU LEU GLU HIS MET LEU VAL ASP ASN ALA ALA MET SEQRES 20 A 390 GLN LEU ILE ARG ASN PRO ARG GLN PHE ASP VAL ILE VAL SEQRES 21 A 390 THR GLU ASN MET PHE GLY ASP ILE LEU SER ASP GLU ALA SEQRES 22 A 390 SER MET ILE THR GLY SER LEU GLY MET LEU PRO SER ALA SEQRES 23 A 390 SER LEU SER THR ASP GLY LEU GLY LEU TYR GLU PRO VAL SEQRES 24 A 390 HIS GLY SER ALA PRO ASP ILE ALA GLY LYS GLY ILE ALA SEQRES 25 A 390 ASN PRO LEU ALA THR ILE LEU SER ALA ALA MET MET LEU SEQRES 26 A 390 ARG TYR SER PHE GLY LEU GLU GLU GLU ALA LYS ALA ILE SEQRES 27 A 390 GLU LYS ALA VAL GLU LYS VAL LEU ALA GLU GLY TYR ARG SEQRES 28 A 390 THR ALA ASP ILE ALA LYS PRO GLY GLY LYS TYR VAL SER SEQRES 29 A 390 THR THR GLU MET THR ASP GLU VAL LYS ALA ALA VAL VAL SEQRES 30 A 390 ASP GLU LEU ALA THR SER ALA ILE MET THR ALA TYR VAL SEQRES 1 B 390 HIS HIS HIS HIS HIS HIS ASP TYR ASP ILE PRO THR THR SEQRES 2 B 390 GLU ASN LEU TYR PHE GLN GLY ALA MET LYS LYS LYS ILE SEQRES 3 B 390 ALA VAL LEU PRO GLY ASP GLY ILE GLY PRO GLU VAL MET SEQRES 4 B 390 GLU ALA ALA ILE GLU VAL LEU LYS ALA VAL ALA GLU ARG SEQRES 5 B 390 PHE GLY HIS GLU PHE GLU PHE GLU TYR GLY LEU ILE GLY SEQRES 6 B 390 GLY ALA ALA ILE ASP GLU ALA GLY THR PRO LEU PRO GLU SEQRES 7 B 390 GLU THR LEU ASP VAL CYS ARG GLY SER ASP ALA ILE LEU SEQRES 8 B 390 LEU GLY ALA VAL GLY GLY PRO LYS TRP ASP GLN ASN PRO SEQRES 9 B 390 SER GLU LEU ARG PRO GLU LYS GLY LEU LEU GLY ILE ARG SEQRES 10 B 390 LYS GLY LEU ASP LEU PHE ALA ASN LEU ARG PRO VAL LYS SEQRES 11 B 390 VAL TYR ASP SER LEU ALA ASP ALA SER PRO LEU LYS LYS SEQRES 12 B 390 GLU VAL ILE GLU GLY VAL ASP LEU VAL ILE VAL ARG GLU SEQRES 13 B 390 LEU THR GLY GLY LEU TYR PHE GLY GLU PRO SER GLU ARG SEQRES 14 B 390 TYR GLU GLU GLY GLU GLU ALA ALA VAL ASP THR LEU LEU SEQRES 15 B 390 TYR THR ARG GLU GLU ILE GLU ARG ILE ILE ARG LYS ALA SEQRES 16 B 390 PHE GLU LEU ALA LEU THR ARG LYS LYS LYS VAL THR SER SEQRES 17 B 390 VAL ASP LYS ALA ASN VAL LEU GLU SER SER ARG LEU TRP SEQRES 18 B 390 ARG GLU VAL ALA GLU GLU VAL ALA LYS GLU TYR PRO ASP SEQRES 19 B 390 VAL GLU LEU GLU HIS MET LEU VAL ASP ASN ALA ALA MET SEQRES 20 B 390 GLN LEU ILE ARG ASN PRO ARG GLN PHE ASP VAL ILE VAL SEQRES 21 B 390 THR GLU ASN MET PHE GLY ASP ILE LEU SER ASP GLU ALA SEQRES 22 B 390 SER MET ILE THR GLY SER LEU GLY MET LEU PRO SER ALA SEQRES 23 B 390 SER LEU SER THR ASP GLY LEU GLY LEU TYR GLU PRO VAL SEQRES 24 B 390 HIS GLY SER ALA PRO ASP ILE ALA GLY LYS GLY ILE ALA SEQRES 25 B 390 ASN PRO LEU ALA THR ILE LEU SER ALA ALA MET MET LEU SEQRES 26 B 390 ARG TYR SER PHE GLY LEU GLU GLU GLU ALA LYS ALA ILE SEQRES 27 B 390 GLU LYS ALA VAL GLU LYS VAL LEU ALA GLU GLY TYR ARG SEQRES 28 B 390 THR ALA ASP ILE ALA LYS PRO GLY GLY LYS TYR VAL SER SEQRES 29 B 390 THR THR GLU MET THR ASP GLU VAL LYS ALA ALA VAL VAL SEQRES 30 B 390 ASP GLU LEU ALA THR SER ALA ILE MET THR ALA TYR VAL FORMUL 3 HOH *16(H2 O) HELIX 1 1 ILE A 13 GLY A 33 1 21 HELIX 2 2 GLY A 44 GLU A 50 1 7 HELIX 3 3 PRO A 56 GLY A 65 1 10 HELIX 4 4 GLY A 91 LEU A 99 1 9 HELIX 5 5 TYR A 111 ALA A 115 5 5 HELIX 6 6 LYS A 121 GLU A 126 1 6 HELIX 7 7 ARG A 164 THR A 180 1 17 HELIX 8 8 LEU A 194 LYS A 209 1 16 HELIX 9 9 VAL A 221 ASN A 231 1 11 HELIX 10 10 PRO A 232 PHE A 235 5 4 HELIX 11 11 GLU A 241 GLY A 257 1 17 HELIX 12 12 PRO A 293 GLY A 309 1 17 HELIX 13 13 LEU A 310 GLY A 328 1 19 HELIX 14 14 SER A 343 GLU A 358 1 16 HELIX 15 15 ILE B 13 GLY B 33 1 21 HELIX 16 16 GLY B 44 GLY B 52 1 9 HELIX 17 17 PRO B 56 GLY B 65 1 10 HELIX 18 18 GLY B 76 ASP B 80 5 5 HELIX 19 19 GLY B 91 LEU B 99 1 9 HELIX 20 20 TYR B 111 ALA B 115 5 5 HELIX 21 21 LYS B 121 GLU B 126 1 6 HELIX 22 22 ARG B 164 ARG B 181 1 18 HELIX 23 23 LEU B 194 LYS B 209 1 16 HELIX 24 24 VAL B 221 ASN B 231 1 11 HELIX 25 25 PRO B 232 PHE B 235 5 4 HELIX 26 26 GLU B 241 GLY B 257 1 17 HELIX 27 27 SER B 258 MET B 261 5 4 HELIX 28 28 ALA B 282 ALA B 286 5 5 HELIX 29 29 PRO B 293 GLY B 309 1 17 HELIX 30 30 LEU B 310 GLY B 328 1 19 HELIX 31 31 SER B 343 ASP B 357 1 15 HELIX 32 32 GLU B 358 ALA B 360 5 3 SHEET 1 A10 GLU A 37 TYR A 40 0 SHEET 2 A10 LYS A 4 GLY A 10 1 N ILE A 5 O GLU A 37 SHEET 3 A10 ALA A 68 ALA A 73 1 O LEU A 70 N ALA A 6 SHEET 4 A10 GLY A 273 PRO A 277 1 O TYR A 275 N LEU A 71 SHEET 5 A10 PRO A 263 SER A 268 -1 N SER A 266 O LEU A 274 SHEET 6 A10 LEU A 101 LYS A 109 -1 N LEU A 105 O ALA A 265 SHEET 7 A10 ASP A 129 GLU A 135 -1 O LEU A 130 N VAL A 108 SHEET 8 A10 VAL A 237 THR A 240 1 O ILE A 238 N VAL A 133 SHEET 9 A10 LYS A 184 ASP A 189 1 N THR A 186 O VAL A 237 SHEET 10 A10 GLU A 215 LEU A 220 1 O GLU A 215 N VAL A 185 SHEET 1 B 2 ALA A 155 THR A 163 0 SHEET 2 B 2 ALA B 155 THR B 163 -1 O ASP B 158 N LEU A 160 SHEET 1 C10 PHE B 36 TYR B 40 0 SHEET 2 C10 LYS B 3 GLY B 10 1 N ILE B 5 O GLU B 37 SHEET 3 C10 ALA B 68 ALA B 73 1 O LEU B 70 N LEU B 8 SHEET 4 C10 GLY B 273 PRO B 277 1 O GLY B 273 N ILE B 69 SHEET 5 C10 PRO B 263 SER B 268 -1 N SER B 266 O LEU B 274 SHEET 6 C10 LEU B 101 LYS B 109 -1 N ALA B 103 O LEU B 267 SHEET 7 C10 ASP B 129 GLU B 135 -1 O LEU B 130 N VAL B 108 SHEET 8 C10 VAL B 237 THR B 240 1 O ILE B 238 N VAL B 131 SHEET 9 C10 LYS B 184 ASP B 189 1 N THR B 186 O VAL B 239 SHEET 10 C10 GLU B 215 LEU B 220 1 O GLU B 217 N SER B 187 CISPEP 1 LYS A 90 GLY A 91 0 -1.80 CRYST1 71.266 75.985 171.225 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014032 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005840 0.00000